Wall clock time and date at job start Mon Mar 30 2020 06:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99994 * 2 1 4 4 H 1.48493 * 109.47505 * 240.00306 * 3 2 1 5 5 H 1.48504 * 109.47068 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46881 * 119.99995 * 3 2 1 7 7 C 1.37873 * 120.00136 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00428 * 180.02562 * 7 2 1 9 9 C 1.50707 * 120.00104 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.46721 * 300.00767 * 9 7 2 11 11 C 1.53001 * 109.46983 * 60.00462 * 9 7 2 12 12 N 1.46893 * 109.47262 * 185.00155 * 11 9 7 13 13 C 1.50694 * 109.47217 * 180.02562 * 9 7 2 14 14 C 1.38293 * 119.93677 * 299.72604 * 13 9 7 15 15 C 1.38313 * 120.05369 * 180.27431 * 14 13 9 16 16 F 1.35107 * 120.04023 * 180.02562 * 15 14 13 17 17 C 1.38898 * 119.91751 * 0.02562 * 15 14 13 18 18 O 1.35982 * 120.06740 * 180.02562 * 17 15 14 19 19 C 1.38718 * 119.87098 * 359.97438 * 17 15 14 20 20 Cl 1.73597 * 120.02995 * 179.97438 * 19 17 15 21 21 C 1.38225 * 119.93447 * 120.00149 * 13 9 7 22 22 H 0.97000 * 120.00287 * 0.02562 * 1 2 3 23 23 H 1.09005 * 109.47111 * 305.00046 * 11 9 7 24 24 H 1.09003 * 109.47159 * 64.99822 * 11 9 7 25 25 H 1.00897 * 111.00418 * 180.02562 * 12 11 9 26 26 H 1.00905 * 110.99959 * 303.95257 * 12 11 9 27 27 H 1.08006 * 119.96846 * 0.27801 * 14 13 9 28 28 H 0.96700 * 114.00262 * 269.98077 * 18 17 15 29 29 H 1.08004 * 119.95471 * 359.69881 * 21 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6247 -2.5570 0.8896 11 6 0.3710 -2.5800 -1.2495 12 7 -0.4522 -3.7951 -1.1907 13 6 2.2303 -3.6446 -0.0005 14 6 3.1305 -3.7829 -1.0412 15 6 4.0266 -4.8365 -1.0465 16 9 4.9062 -4.9712 -2.0632 17 6 4.0210 -5.7559 -0.0054 18 8 4.9010 -6.7926 -0.0073 19 6 3.1167 -5.6140 1.0368 20 17 3.1057 -6.7611 2.3398 21 6 2.2233 -4.5580 1.0368 22 1 -0.4850 0.8400 -0.0004 23 1 -0.2765 -1.7043 -1.2951 24 1 1.0025 -2.6115 -2.1375 25 1 -1.0426 -3.8718 -2.0053 26 1 0.1233 -4.6170 -1.0830 27 1 3.1337 -3.0676 -1.8505 28 1 4.5712 -7.5877 -0.4480 29 1 1.5194 -4.4471 1.8484 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260436691.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:32 Heat of formation + Delta-G solvation = -97.644675 kcal Electronic energy + Delta-G solvation = -17140.649287 eV Core-core repulsion = 14003.064176 eV Total energy + Delta-G solvation = -3137.585111 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.99791 -40.82736 -38.56646 -37.55922 -36.22255 -34.14346 -31.87515 -31.50966 -28.81464 -25.87953 -24.36962 -23.69733 -21.53874 -19.70625 -18.66205 -18.17827 -17.67271 -17.11994 -16.73978 -16.36147 -16.12224 -15.72474 -15.25341 -15.15103 -14.76885 -14.13196 -13.72307 -13.56392 -13.51018 -12.96350 -12.78554 -12.43951 -12.38909 -12.24083 -11.98624 -11.70693 -11.42471 -11.21841 -10.53800 -9.78016 -9.52124 -9.31288 -8.11414 -6.26737 -0.06520 -0.01484 0.95859 1.44548 1.46014 1.52785 2.32250 2.47076 2.83171 3.15648 3.28062 3.81879 3.88386 4.08509 4.24840 4.36174 4.69526 4.78527 4.88378 4.99795 5.04743 5.29871 5.56993 5.61219 5.87100 5.92152 6.24200 6.54258 6.61099 6.75416 6.89764 7.42133 8.91704 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.022240 B = 0.006504 C = 0.006190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.694522 B = 4303.964240 C = 4522.431895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.024 3.976 3 Si 0.949 3.051 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.275 1.275 7 C -0.532 4.532 8 H 0.054 0.946 9 C 0.087 3.913 10 H 0.022 0.978 11 C 0.078 3.922 12 N -0.850 5.850 13 C -0.015 4.015 14 C -0.134 4.134 15 C 0.079 3.921 16 F -0.134 7.134 17 C 0.068 3.932 18 O -0.482 6.482 19 C -0.032 4.032 20 Cl -0.041 7.041 21 C -0.108 4.108 22 H 0.264 0.736 23 H 0.079 0.921 24 H 0.002 0.998 25 H 0.338 0.662 26 H 0.331 0.669 27 H 0.136 0.864 28 H 0.409 0.591 29 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.443 -12.030 -1.310 12.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.176 4.176 3 Si 0.775 3.225 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.570 4.570 8 H 0.073 0.927 9 C 0.068 3.932 10 H 0.040 0.960 11 C -0.052 4.052 12 N -0.379 5.379 13 C -0.015 4.015 14 C -0.153 4.153 15 C 0.059 3.941 16 F -0.113 7.113 17 C 0.021 3.979 18 O -0.295 6.295 19 C -0.059 4.059 20 Cl -0.012 7.012 21 C -0.127 4.127 22 H 0.073 0.927 23 H 0.097 0.903 24 H 0.020 0.980 25 H 0.150 0.850 26 H 0.143 0.857 27 H 0.154 0.846 28 H 0.268 0.732 29 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 4.368 -11.313 -0.275 12.130 hybrid contribution 0.673 0.407 -1.185 1.422 sum 5.041 -10.906 -1.460 12.103 Atomic orbital electron populations 1.69984 1.06890 1.27484 1.50081 1.25615 0.95570 1.01958 0.94454 0.85741 0.78487 0.79455 0.78787 1.19652 1.20960 1.20009 1.21296 0.92924 0.90845 1.51948 0.92726 1.17748 0.90792 0.89389 0.95280 0.96035 1.21790 0.95170 0.92760 0.95492 1.58807 1.26989 1.04892 1.47251 1.20194 0.95073 0.94645 0.91611 1.21067 0.95623 0.97345 1.01246 1.17839 0.91855 0.98014 0.86380 1.91473 1.66744 1.95647 1.57396 1.17806 0.93829 0.92787 0.93501 1.84857 1.40062 1.23706 1.80838 1.21014 0.97834 0.95001 0.92082 1.98355 1.97958 1.58348 1.46507 1.21094 0.98937 0.92890 0.99750 0.92711 0.90308 0.97986 0.84953 0.85688 0.84602 0.73224 0.83959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.20 11.29 21.45 0.24 -48.96 15 2 C 0.02 1.27 5.29 84.65 0.45 1.71 15 3 Si 0.95 41.60 29.54 68.60 2.03 43.63 15 4 H -0.27 -11.60 7.11 99.48 0.71 -10.89 15 5 H -0.28 -12.28 7.11 99.48 0.71 -11.57 15 6 H -0.27 -11.93 7.11 99.48 0.71 -11.22 15 7 C -0.53 -27.19 8.24 25.60 0.21 -26.98 15 8 H 0.05 2.79 7.61 -2.91 -0.02 2.77 15 9 C 0.09 3.99 2.16 -12.29 -0.03 3.96 15 10 H 0.02 1.11 7.87 -2.39 -0.02 1.09 15 11 C 0.08 3.42 5.98 86.30 0.52 3.94 15 12 N -0.85 -30.72 9.62 -186.72 -1.80 -32.52 15 13 C -0.01 -0.56 3.77 -19.86 -0.07 -0.63 15 14 C -0.13 -4.80 8.63 22.30 0.19 -4.61 15 15 C 0.08 2.56 7.31 22.45 0.16 2.72 15 16 F -0.13 -4.28 17.11 44.97 0.77 -3.51 15 17 C 0.07 1.99 6.70 22.54 0.15 2.15 15 18 O -0.48 -11.96 12.83 -93.35 -1.20 -13.16 15 19 C -0.03 -0.95 6.33 22.40 0.14 -0.81 15 20 Cl -0.04 -1.05 28.50 -2.72 -0.08 -1.12 15 21 C -0.11 -3.65 9.45 22.28 0.21 -3.43 15 22 H 0.26 13.75 8.31 -92.71 -0.77 12.98 15 23 H 0.08 4.00 5.95 -2.38 -0.01 3.98 15 24 H 0.00 0.09 7.21 -2.39 -0.02 0.07 15 25 H 0.34 10.55 9.08 -89.70 -0.81 9.73 15 26 H 0.33 10.85 8.07 -89.69 -0.72 10.13 15 27 H 0.14 5.05 7.53 -2.91 -0.02 5.03 15 28 H 0.41 6.03 9.06 -74.06 -0.67 5.36 15 29 H 0.14 4.71 7.94 -2.91 -0.02 4.69 15 Total: -1.00 -56.40 272.71 0.92 -55.48 By element: Atomic # 1 Polarization: 23.11 SS G_CDS: -0.98 Total: 22.13 kcal Atomic # 6 Polarization: -23.91 SS G_CDS: 1.93 Total: -21.97 kcal Atomic # 7 Polarization: -79.93 SS G_CDS: -1.55 Total: -81.48 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: -1.20 Total: -13.16 kcal Atomic # 9 Polarization: -4.28 SS G_CDS: 0.77 Total: -3.51 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Atomic # 17 Polarization: -1.05 SS G_CDS: -0.08 Total: -1.12 kcal Total: -56.40 0.92 -55.48 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260436691.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.167 kcal (2) G-P(sol) polarization free energy of solvation -56.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds