Wall clock time and date at job start Mon Mar 30 2020 06:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 119.99970 * 2 1 4 4 H 1.48508 * 109.47047 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47062 * 239.99845 * 3 2 1 6 6 H 1.48494 * 109.47586 * 119.99550 * 3 2 1 7 7 C 1.37872 * 119.99803 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99852 * 177.77051 * 7 2 1 9 9 C 1.50694 * 120.00397 * 357.76950 * 7 2 1 10 10 H 1.09000 * 109.47520 * 326.06879 * 9 7 2 11 11 C 1.53002 * 109.47423 * 206.06847 * 9 7 2 12 12 N 1.46903 * 109.47063 * 65.38110 * 11 9 7 13 13 C 1.50701 * 109.47042 * 86.07147 * 9 7 2 14 14 C 1.38294 * 119.93162 * 240.00380 * 13 9 7 15 15 C 1.38322 * 120.05171 * 179.97438 * 14 13 9 16 16 F 1.35095 * 120.04465 * 180.02562 * 15 14 13 17 17 C 1.38908 * 119.91573 * 0.02562 * 15 14 13 18 18 O 1.35975 * 120.06537 * 179.97438 * 17 15 14 19 19 C 1.38726 * 119.86835 * 0.02562 * 17 15 14 20 20 Cl 1.73591 * 120.02481 * 180.02562 * 19 17 15 21 21 C 1.38216 * 119.93614 * 59.72538 * 13 9 7 22 22 H 0.97000 * 120.00178 * 174.32677 * 1 2 3 23 23 H 1.09000 * 109.47133 * 185.37620 * 11 9 7 24 24 H 1.08994 * 109.47138 * 305.38107 * 11 9 7 25 25 H 1.00898 * 110.99857 * 181.05652 * 12 11 9 26 26 H 1.00907 * 110.99746 * 305.01022 * 12 11 9 27 27 H 1.07998 * 119.97572 * 359.97438 * 14 13 9 28 28 H 0.96694 * 114.00175 * 90.00097 * 18 17 15 29 29 H 1.07998 * 119.95653 * 0.02562 * 21 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6963 -1.2125 6 1 3.1028 1.6965 1.2125 7 6 2.0044 -1.1940 0.0005 8 1 3.0839 -1.1944 -0.0359 9 6 1.2519 -2.4986 0.0519 10 1 0.3516 -2.3753 0.6539 11 6 2.1403 -3.5756 0.6778 12 7 2.4078 -3.2349 2.0815 13 6 0.8690 -2.9130 -1.3455 14 6 -0.4640 -3.0753 -1.6763 15 6 -0.8183 -3.4550 -2.9583 16 9 -2.1205 -3.6131 -3.2814 17 6 0.1666 -3.6738 -3.9131 18 8 -0.1782 -4.0477 -5.1742 19 6 1.5027 -3.5110 -3.5773 20 17 2.7368 -3.7826 -4.7676 21 6 1.8503 -3.1245 -2.2955 22 1 -0.4850 -0.8359 -0.0830 23 1 1.6329 -4.5391 0.6282 24 1 3.0819 -3.6323 0.1318 25 1 3.0071 -3.9226 2.5126 26 1 2.8037 -2.3101 2.1599 27 1 -1.2289 -2.9054 -0.9331 28 1 -0.3218 -3.3068 -5.7787 29 1 2.8902 -2.9929 -2.0352 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260436695.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:35 Heat of formation + Delta-G solvation = -85.656874 kcal Electronic energy + Delta-G solvation = -17237.155971 eV Core-core repulsion = 14100.090690 eV Total energy + Delta-G solvation = -3137.065281 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.052 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.56169 -39.36490 -37.16668 -36.26025 -34.82031 -32.56391 -30.21879 -30.05725 -26.82433 -24.17561 -22.70388 -22.28685 -20.27230 -18.38768 -17.32867 -16.63006 -16.16457 -15.67839 -15.05687 -14.97355 -14.62032 -14.06028 -13.80049 -13.46657 -13.15296 -12.74181 -12.53791 -12.26298 -11.98559 -11.39691 -11.16298 -10.93329 -10.80696 -10.52817 -10.38667 -10.25900 -9.91649 -8.97026 -8.60333 -8.33646 -7.96612 -7.92102 -6.54710 -4.30945 1.39882 1.46905 2.30733 3.33701 3.34812 3.53142 3.82194 4.23636 4.37940 4.66258 5.02857 5.33463 5.38563 5.53846 5.72908 5.84201 6.08703 6.11147 6.17205 6.39351 6.49241 6.72231 6.81468 7.10138 7.29445 7.71400 7.86591 7.91217 8.18698 8.19874 8.64054 9.41193 10.82565 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.017806 B = 0.007497 C = 0.007385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.114460 B = 3733.711058 C = 3790.454249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.029 3.971 3 Si 1.064 2.936 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.285 1.285 7 C -0.589 4.589 8 H 0.053 0.947 9 C 0.057 3.943 10 H 0.058 0.942 11 C 0.084 3.916 12 N -0.845 5.845 13 C 0.002 3.998 14 C -0.144 4.144 15 C 0.087 3.913 16 F -0.136 7.136 17 C 0.044 3.956 18 O -0.481 6.481 19 C -0.035 4.035 20 Cl -0.067 7.067 21 C -0.096 4.096 22 H 0.273 0.727 23 H 0.046 0.954 24 H 0.014 0.986 25 H 0.322 0.678 26 H 0.352 0.648 27 H 0.138 0.862 28 H 0.384 0.616 29 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.063 -5.516 -5.296 8.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.178 4.178 3 Si 0.891 3.109 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.212 1.212 7 C -0.626 4.626 8 H 0.071 0.929 9 C 0.038 3.962 10 H 0.076 0.924 11 C -0.047 4.047 12 N -0.375 5.375 13 C 0.000 4.000 14 C -0.163 4.163 15 C 0.067 3.933 16 F -0.114 7.114 17 C -0.002 4.002 18 O -0.290 6.290 19 C -0.062 4.062 20 Cl -0.038 7.038 21 C -0.115 4.115 22 H 0.084 0.916 23 H 0.064 0.936 24 H 0.032 0.968 25 H 0.132 0.868 26 H 0.167 0.833 27 H 0.156 0.844 28 H 0.239 0.761 29 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 2.167 -4.537 -5.015 7.101 hybrid contribution 0.989 -1.075 -0.997 1.769 sum 3.156 -5.612 -6.012 8.809 Atomic orbital electron populations 1.70788 1.06923 1.31323 1.43864 1.25832 0.96424 1.02672 0.92905 0.83607 0.75078 0.75515 0.76659 1.20659 1.21393 1.21176 1.21759 0.93878 0.90448 1.56547 0.92913 1.18159 0.97589 0.94105 0.86370 0.92433 1.21661 0.97412 0.97322 0.88316 1.58661 1.54617 1.07622 1.16598 1.20803 0.90456 0.88914 0.99793 1.21187 0.98117 1.02527 0.94492 1.17845 0.77579 1.03646 0.94251 1.91459 1.33316 1.93363 1.93301 1.17801 0.89585 1.06787 0.86073 1.84880 1.90623 1.35447 1.18029 1.21073 0.88105 1.05247 0.91813 1.98331 1.53195 1.94977 1.57270 1.20865 1.01385 0.99377 0.89836 0.91567 0.93571 0.96752 0.86788 0.83330 0.84419 0.76145 0.84453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.74 13.58 55.43 0.75 -23.99 15 2 C 0.03 0.74 5.46 -17.82 -0.10 0.64 15 3 Si 1.06 23.23 29.90 -169.99 -5.08 18.15 15 4 H -0.28 -6.31 7.11 56.52 0.40 -5.90 15 5 H -0.29 -6.09 7.11 56.52 0.40 -5.69 15 6 H -0.29 -5.93 7.11 56.52 0.40 -5.53 15 7 C -0.59 -14.29 6.95 -34.44 -0.24 -14.53 15 8 H 0.05 1.27 7.81 -52.49 -0.41 0.86 15 9 C 0.06 1.25 1.81 -92.92 -0.17 1.08 15 10 H 0.06 1.41 6.64 -51.93 -0.34 1.06 15 11 C 0.08 1.60 5.97 -3.82 -0.02 1.58 15 12 N -0.85 -15.22 9.63 -10.37 -0.10 -15.32 15 13 C 0.00 0.04 4.66 -104.61 -0.49 -0.44 15 14 C -0.14 -2.87 9.07 -39.53 -0.36 -3.22 15 15 C 0.09 1.64 7.31 -39.30 -0.29 1.35 15 16 F -0.14 -2.52 17.11 2.25 0.04 -2.48 15 17 C 0.04 0.79 6.70 -39.15 -0.26 0.52 15 18 O -0.48 -7.54 12.83 -19.66 -0.25 -7.79 15 19 C -0.04 -0.63 6.33 -39.37 -0.25 -0.88 15 20 Cl -0.07 -1.04 28.50 -51.86 -1.48 -2.51 15 21 C -0.10 -1.83 8.64 -39.56 -0.34 -2.17 15 22 H 0.27 7.41 6.03 -40.82 -0.25 7.16 15 23 H 0.05 0.84 8.14 -51.93 -0.42 0.42 15 24 H 0.01 0.27 7.59 -51.93 -0.39 -0.13 15 25 H 0.32 4.75 9.08 -39.29 -0.36 4.40 15 26 H 0.35 6.64 8.06 -39.29 -0.32 6.33 15 27 H 0.14 2.69 7.83 -52.49 -0.41 2.27 15 28 H 0.38 4.37 9.06 45.56 0.41 4.78 15 29 H 0.14 2.56 7.64 -52.49 -0.40 2.16 15 LS Contribution 273.68 15.07 4.12 4.12 Total: -1.00 -27.49 273.68 -6.20 -33.69 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -1.69 Total: 12.19 kcal Atomic # 6 Polarization: -13.56 SS G_CDS: -2.52 Total: -16.07 kcal Atomic # 7 Polarization: -39.96 SS G_CDS: 0.65 Total: -39.31 kcal Atomic # 8 Polarization: -7.54 SS G_CDS: -0.25 Total: -7.79 kcal Atomic # 9 Polarization: -2.52 SS G_CDS: 0.04 Total: -2.48 kcal Atomic # 14 Polarization: 23.23 SS G_CDS: -5.08 Total: 18.15 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -1.48 Total: -2.51 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -27.49 -6.20 -33.69 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260436695.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.967 kcal (2) G-P(sol) polarization free energy of solvation -27.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds