Wall clock time and date at job start Mon Mar 30 2020 06:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 119.99763 * 2 1 4 4 H 1.48498 * 109.47225 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47559 * 300.00080 * 3 2 1 6 6 H 1.48505 * 109.47115 * 60.00256 * 3 2 1 7 7 C 1.37871 * 119.99699 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99602 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00667 * 359.97438 * 7 2 1 10 10 H 1.08992 * 109.47201 * 300.00550 * 9 7 2 11 11 C 1.53006 * 109.46610 * 60.00191 * 9 7 2 12 12 N 1.46902 * 109.46626 * 184.99960 * 11 9 7 13 13 C 1.50703 * 109.47407 * 180.02562 * 9 7 2 14 14 C 1.38640 * 120.01928 * 119.72471 * 13 9 7 15 15 O 1.35960 * 120.05876 * 0.02562 * 14 13 9 16 16 C 1.38915 * 119.88757 * 179.81282 * 14 13 9 17 17 F 1.35102 * 120.03629 * 180.20956 * 16 14 13 18 18 C 1.38324 * 119.92881 * 0.46915 * 16 14 13 19 19 C 1.38248 * 120.04362 * 359.76099 * 18 16 14 20 20 C 1.38286 * 120.01946 * 300.00396 * 13 9 7 21 21 Cl 1.73595 * 119.96717 * 359.97438 * 20 13 9 22 22 H 0.96999 * 120.00336 * 0.02562 * 1 2 3 23 23 H 1.08993 * 109.46955 * 305.00306 * 11 9 7 24 24 H 1.09000 * 109.47050 * 65.00135 * 11 9 7 25 25 H 1.00898 * 110.99915 * 56.05185 * 12 11 9 26 26 H 1.00900 * 110.99481 * 180.02562 * 12 11 9 27 27 H 0.96696 * 113.99540 * 89.99875 * 15 14 13 28 28 H 1.08001 * 119.98177 * 179.74881 * 18 16 14 29 29 H 1.08009 * 119.94782 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2126 7 6 2.0044 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6247 -2.5571 0.8896 11 6 0.3710 -2.5799 -1.2496 12 7 -0.4522 -3.7952 -1.1907 13 6 2.2304 -3.6446 -0.0005 14 6 2.2287 -4.5586 1.0419 15 8 1.3435 -4.4231 2.0650 16 6 3.1300 -5.6156 1.0372 17 9 3.1282 -6.5104 2.0494 18 6 4.0330 -5.7480 -0.0022 19 6 4.0353 -4.8322 -1.0379 20 6 3.1350 -3.7814 -1.0374 21 17 3.1417 -2.6333 -2.3395 22 1 -0.4850 0.8400 -0.0004 23 1 -0.2764 -1.7042 -1.2950 24 1 1.0024 -2.6114 -2.1375 25 1 -0.9996 -3.8204 -0.3435 26 1 -1.0426 -3.8717 -2.0054 27 1 0.5047 -4.8826 1.9227 28 1 4.7368 -6.5672 -0.0047 29 1 4.7413 -4.9368 -1.8486 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260439459.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:21 Heat of formation + Delta-G solvation = -91.915174 kcal Electronic energy + Delta-G solvation = -17653.249091 eV Core-core repulsion = 14515.912430 eV Total energy + Delta-G solvation = -3137.336661 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.87218 -40.78186 -37.99180 -36.93687 -36.68604 -34.04358 -32.33833 -30.43396 -29.05392 -25.89022 -24.05428 -23.55579 -21.54315 -19.49090 -18.75976 -17.97523 -17.58549 -17.05128 -16.62559 -16.35211 -16.17251 -15.31940 -15.28450 -15.02296 -14.33471 -14.05555 -13.80607 -13.68336 -13.14802 -12.97339 -12.80168 -12.58647 -12.38664 -12.18264 -11.68429 -11.29727 -11.24621 -10.97751 -10.41908 -9.56780 -9.31399 -9.25827 -8.06443 -6.16389 0.02775 0.27495 1.38409 1.41270 1.43041 1.52332 2.40494 2.53091 3.08854 3.20806 3.41003 3.83244 4.09350 4.16959 4.29791 4.69634 4.81304 4.88570 5.04810 5.16529 5.24258 5.29234 5.57544 5.72540 5.93335 5.96615 6.20891 6.56717 6.75635 6.77449 6.95216 7.47331 8.95897 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.021674 B = 0.008662 C = 0.008055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.581451 B = 3231.899360 C = 3475.208823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.021 3.979 3 Si 0.940 3.060 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.284 1.284 7 C -0.499 4.499 8 H 0.051 0.949 9 C 0.091 3.909 10 H 0.016 0.984 11 C 0.058 3.942 12 N -0.848 5.848 13 C -0.032 4.032 14 C 0.063 3.937 15 O -0.494 6.494 16 C 0.063 3.937 17 F -0.139 7.139 18 C -0.137 4.137 19 C -0.088 4.088 20 C -0.040 4.040 21 Cl -0.053 7.053 22 H 0.259 0.741 23 H 0.035 0.965 24 H 0.068 0.932 25 H 0.330 0.670 26 H 0.335 0.665 27 H 0.400 0.600 28 H 0.179 0.821 29 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.656 -10.394 -3.214 11.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.177 4.177 3 Si 0.766 3.234 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.210 1.210 7 C -0.538 4.538 8 H 0.070 0.930 9 C 0.072 3.928 10 H 0.034 0.966 11 C -0.073 4.073 12 N -0.376 5.376 13 C -0.033 4.033 14 C 0.017 3.983 15 O -0.305 6.305 16 C 0.043 3.957 17 F -0.117 7.117 18 C -0.156 4.156 19 C -0.106 4.106 20 C -0.067 4.067 21 Cl -0.024 7.024 22 H 0.068 0.932 23 H 0.053 0.947 24 H 0.086 0.914 25 H 0.141 0.859 26 H 0.146 0.854 27 H 0.258 0.742 28 H 0.196 0.804 29 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 5.659 -10.247 -3.044 12.095 hybrid contribution -1.232 1.561 0.132 1.992 sum 4.427 -8.686 -2.912 10.175 Atomic orbital electron populations 1.69981 1.06780 1.26797 1.51967 1.25483 0.95509 1.01550 0.95201 0.85765 0.79436 0.80693 0.77474 1.19285 1.20606 1.21033 1.21200 0.92737 0.90511 1.49362 0.93047 1.17610 0.91422 0.89091 0.94704 0.96574 1.22097 0.96071 0.90041 0.99072 1.58999 1.29934 1.41731 1.06938 1.20379 0.96195 0.95993 0.90749 1.18225 0.95204 0.94756 0.90128 1.84827 1.29330 1.76828 1.39490 1.18252 1.00480 0.88752 0.88214 1.91448 1.96006 1.65906 1.58376 1.21134 0.99849 1.02123 0.92503 1.21180 0.97850 0.91936 0.99674 1.20809 0.99389 0.94340 0.92166 1.98320 1.97074 1.59945 1.47069 0.93207 0.94673 0.91388 0.85896 0.85368 0.74244 0.80412 0.81217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.91 11.29 21.45 0.24 -50.67 15 2 C 0.02 1.13 5.29 84.65 0.45 1.58 15 3 Si 0.94 43.34 29.54 68.60 2.03 45.37 15 4 H -0.27 -12.16 7.11 99.48 0.71 -11.45 15 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 15 6 H -0.28 -13.03 7.11 99.48 0.71 -12.32 15 7 C -0.50 -26.43 6.83 25.60 0.17 -26.25 15 8 H 0.05 2.76 7.27 -2.91 -0.02 2.74 15 9 C 0.09 4.34 1.96 -12.28 -0.02 4.32 15 10 H 0.02 0.86 6.99 -2.39 -0.02 0.85 15 11 C 0.06 2.58 5.81 86.31 0.50 3.08 15 12 N -0.85 -30.85 9.34 -186.71 -1.74 -32.60 15 13 C -0.03 -1.32 4.48 -19.76 -0.09 -1.41 15 14 C 0.06 2.41 6.68 22.53 0.15 2.56 15 15 O -0.49 -18.69 12.13 -93.10 -1.13 -19.82 15 16 C 0.06 2.06 7.31 22.45 0.16 2.22 15 17 F -0.14 -4.43 17.11 44.97 0.77 -3.66 15 18 C -0.14 -3.64 10.02 22.29 0.22 -3.41 15 19 C -0.09 -2.48 9.82 22.31 0.22 -2.26 15 20 C -0.04 -1.48 5.92 22.31 0.13 -1.34 15 21 Cl -0.05 -2.00 23.57 -2.72 -0.06 -2.07 15 22 H 0.26 13.85 8.31 -92.71 -0.77 13.08 15 23 H 0.04 1.81 5.95 -2.39 -0.01 1.80 15 24 H 0.07 3.02 4.88 -2.39 -0.01 3.01 15 25 H 0.33 11.62 8.99 -89.70 -0.81 10.81 15 26 H 0.34 10.68 9.08 -89.69 -0.81 9.86 15 27 H 0.40 11.57 9.06 -74.06 -0.67 10.90 15 28 H 0.18 3.23 8.06 -2.91 -0.02 3.21 15 29 H 0.17 3.55 8.06 -2.91 -0.02 3.53 15 Total: -1.00 -61.24 265.08 0.95 -60.29 By element: Atomic # 1 Polarization: 25.12 SS G_CDS: -1.05 Total: 24.07 kcal Atomic # 6 Polarization: -22.82 SS G_CDS: 1.90 Total: -20.92 kcal Atomic # 7 Polarization: -81.77 SS G_CDS: -1.50 Total: -83.27 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: -1.13 Total: -19.82 kcal Atomic # 9 Polarization: -4.43 SS G_CDS: 0.77 Total: -3.66 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Atomic # 17 Polarization: -2.00 SS G_CDS: -0.06 Total: -2.07 kcal Total: -61.24 0.95 -60.29 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260439459.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.626 kcal (2) G-P(sol) polarization free energy of solvation -61.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds