Wall clock time and date at job start Mon Mar 30 2020 06:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86796 * 120.00435 * 2 1 4 4 H 1.48493 * 109.47376 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47182 * 299.99933 * 3 2 1 6 6 H 1.48495 * 109.47060 * 59.99793 * 3 2 1 7 7 C 1.37883 * 119.99607 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99981 * 186.80606 * 7 2 1 9 9 C 1.50702 * 120.00144 * 6.81363 * 7 2 1 10 10 H 1.08994 * 109.47084 * 325.21352 * 9 7 2 11 11 C 1.53000 * 109.47014 * 205.20799 * 9 7 2 12 12 N 1.46907 * 109.46762 * 65.76329 * 11 9 7 13 13 C 1.50707 * 109.47011 * 85.21129 * 9 7 2 14 14 C 1.38641 * 120.01992 * 239.99871 * 13 9 7 15 15 O 1.35951 * 120.05740 * 0.25508 * 14 13 9 16 16 C 1.38910 * 119.88954 * 179.97438 * 14 13 9 17 17 F 1.35094 * 120.03694 * 180.02562 * 16 14 13 18 18 C 1.38333 * 119.92571 * 0.02562 * 16 14 13 19 19 C 1.38240 * 120.04754 * 359.97302 * 18 16 14 20 20 C 1.38283 * 120.02028 * 59.97697 * 13 9 7 21 21 Cl 1.73603 * 119.96815 * 0.04518 * 20 13 9 22 22 H 0.97003 * 119.99786 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.47208 * 185.75943 * 11 9 7 24 24 H 1.08997 * 109.47639 * 305.76616 * 11 9 7 25 25 H 1.00895 * 110.99669 * 56.04236 * 12 11 9 26 26 H 1.00899 * 110.99742 * 179.97438 * 12 11 9 27 27 H 0.96702 * 114.00207 * 269.72282 * 15 14 13 28 28 H 1.08002 * 119.97277 * 179.97438 * 18 16 14 29 29 H 1.07994 * 119.94975 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7091 1.3462 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3963 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0787 -1.1975 0.1114 9 6 1.2588 -2.4947 -0.1537 10 1 0.2906 -2.4193 0.3410 11 6 2.0697 -3.6259 0.4818 12 7 2.1524 -3.4133 1.9331 13 6 1.0534 -2.7853 -1.6182 14 6 -0.2300 -2.9129 -2.1266 15 8 -1.3047 -2.7709 -1.3062 16 6 -0.4162 -3.1802 -3.4770 17 9 -1.6656 -3.3046 -3.9757 18 6 0.6791 -3.3190 -4.3105 19 6 1.9576 -3.1913 -3.8005 20 6 2.1450 -2.9245 -2.4556 21 17 3.7523 -2.7654 -1.8190 22 1 -0.4850 0.8401 -0.0004 23 1 1.5816 -4.5797 0.2816 24 1 3.0739 -3.6355 0.0583 25 1 1.2325 -3.3360 2.3402 26 1 2.6832 -4.1481 2.3764 27 1 -1.6007 -3.5966 -0.8992 28 1 0.5352 -3.5273 -5.3604 29 1 2.8115 -3.2995 -4.4526 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260439464.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:24 Heat of formation + Delta-G solvation = -67.121325 kcal Electronic energy + Delta-G solvation = -17719.243229 eV Core-core repulsion = 14582.981710 eV Total energy + Delta-G solvation = -3136.261519 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.052 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.41907 -39.19631 -36.41400 -35.40792 -34.99527 -32.27582 -30.69834 -28.94537 -27.23895 -24.21444 -22.39466 -22.01945 -19.89184 -17.89252 -17.06100 -16.45192 -15.87453 -15.51840 -14.94218 -14.78207 -14.43249 -13.73603 -13.68914 -13.45704 -12.72335 -12.56804 -12.22614 -12.12310 -11.81069 -11.20706 -10.91411 -10.82396 -10.59701 -10.25238 -9.98126 -9.90297 -9.48694 -8.90856 -8.33466 -8.01717 -7.80788 -7.68294 -5.93029 -3.91603 1.51304 1.73314 2.87807 3.36474 3.44787 3.49701 3.96088 4.51196 4.56238 4.88303 5.12721 5.38725 5.50727 5.56943 5.84440 6.11481 6.19447 6.32256 6.39172 6.43664 6.77345 6.82192 7.00707 7.20625 7.73909 7.98376 8.03233 8.27370 8.28877 8.41886 9.11696 9.66742 11.13288 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.016903 B = 0.010283 C = 0.009225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.122778 B = 2722.358814 C = 3034.489369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.062 3.938 3 Si 0.883 3.117 4 H -0.271 1.271 5 H -0.287 1.287 6 H -0.286 1.286 7 C -0.474 4.474 8 H 0.068 0.932 9 C 0.068 3.932 10 H 0.074 0.926 11 C 0.064 3.936 12 N -0.829 5.829 13 C -0.017 4.017 14 C 0.084 3.916 15 O -0.457 6.457 16 C 0.065 3.935 17 F -0.142 7.142 18 C -0.164 4.164 19 C -0.102 4.102 20 C -0.029 4.029 21 Cl -0.055 7.055 22 H 0.258 0.742 23 H -0.011 1.011 24 H 0.077 0.923 25 H 0.333 0.667 26 H 0.320 0.680 27 H 0.373 0.627 28 H 0.134 0.866 29 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.831 -9.158 -4.501 10.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.141 4.141 3 Si 0.712 3.288 4 H -0.196 1.196 5 H -0.214 1.214 6 H -0.212 1.212 7 C -0.511 4.511 8 H 0.086 0.914 9 C 0.049 3.951 10 H 0.092 0.908 11 C -0.066 4.066 12 N -0.356 5.356 13 C -0.020 4.020 14 C 0.038 3.962 15 O -0.264 6.264 16 C 0.045 3.955 17 F -0.121 7.121 18 C -0.184 4.184 19 C -0.121 4.121 20 C -0.056 4.056 21 Cl -0.026 7.026 22 H 0.068 0.932 23 H 0.007 0.993 24 H 0.095 0.905 25 H 0.145 0.855 26 H 0.130 0.870 27 H 0.226 0.774 28 H 0.151 0.849 29 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.190 -7.730 -4.795 9.356 hybrid contribution -0.357 -0.252 -0.064 0.442 sum 1.833 -7.982 -4.859 9.523 Atomic orbital electron populations 1.70010 1.05605 1.26253 1.48782 1.25037 0.94793 0.99152 0.95145 0.86655 0.80563 0.84314 0.77307 1.19576 1.21361 1.21201 1.20867 0.93857 0.88481 1.47928 0.91413 1.18015 0.98866 0.93716 0.84495 0.90840 1.22201 1.01405 0.94682 0.88341 1.58490 1.21433 1.51547 1.04174 1.20989 0.89055 0.90248 1.01665 1.18069 0.87786 1.03054 0.87334 1.85114 1.44649 1.34226 1.62376 1.18244 0.79588 1.05037 0.92620 1.91429 1.39106 1.93694 1.87842 1.20629 0.90988 1.07064 0.99682 1.20740 0.96741 1.01115 0.93512 1.20572 0.86799 1.05447 0.92802 1.98306 1.21605 1.96035 1.86617 0.93223 0.99309 0.90531 0.85461 0.86967 0.77359 0.84854 0.85013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.84 12.92 55.43 0.72 -24.12 15 2 C 0.06 1.70 5.45 -17.82 -0.10 1.61 15 3 Si 0.88 21.76 29.54 -169.99 -5.02 16.74 15 4 H -0.27 -6.60 7.11 56.52 0.40 -6.20 15 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 15 6 H -0.29 -7.02 7.11 56.52 0.40 -6.62 15 7 C -0.47 -12.33 6.60 -34.44 -0.23 -12.56 15 8 H 0.07 1.80 6.85 -52.49 -0.36 1.44 15 9 C 0.07 1.57 1.97 -92.92 -0.18 1.38 15 10 H 0.07 1.87 6.36 -51.93 -0.33 1.54 15 11 C 0.06 1.27 5.83 -3.82 -0.02 1.25 15 12 N -0.83 -15.37 9.36 -10.37 -0.10 -15.46 15 13 C -0.02 -0.36 4.78 -104.45 -0.50 -0.86 15 14 C 0.08 1.76 6.68 -39.18 -0.26 1.50 15 15 O -0.46 -9.47 12.13 -19.59 -0.24 -9.71 15 16 C 0.07 1.23 7.31 -39.30 -0.29 0.94 15 17 F -0.14 -2.64 17.11 2.25 0.04 -2.60 15 18 C -0.16 -2.69 10.02 -39.55 -0.40 -3.09 15 19 C -0.10 -1.70 9.82 -39.53 -0.39 -2.08 15 20 C -0.03 -0.57 6.03 -39.51 -0.24 -0.81 15 21 Cl -0.05 -1.03 23.26 -51.86 -1.21 -2.24 15 22 H 0.26 7.20 8.31 -40.82 -0.34 6.86 15 23 H -0.01 -0.21 8.14 -51.93 -0.42 -0.63 15 24 H 0.08 1.52 5.08 -51.93 -0.26 1.26 15 25 H 0.33 5.99 8.99 -39.29 -0.35 5.64 15 26 H 0.32 4.88 9.08 -39.29 -0.36 4.52 15 27 H 0.37 5.67 9.06 45.56 0.41 6.09 15 28 H 0.13 1.76 8.06 -52.49 -0.42 1.33 15 29 H 0.13 1.78 8.06 -52.49 -0.42 1.36 15 LS Contribution 268.12 15.07 4.04 4.04 Total: -1.00 -30.20 268.12 -6.02 -36.22 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -1.65 Total: 9.86 kcal Atomic # 6 Polarization: -10.12 SS G_CDS: -2.60 Total: -12.72 kcal Atomic # 7 Polarization: -40.20 SS G_CDS: 0.62 Total: -39.58 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: -0.24 Total: -9.71 kcal Atomic # 9 Polarization: -2.64 SS G_CDS: 0.04 Total: -2.60 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -1.21 Total: -2.24 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -30.20 -6.02 -36.22 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260439464.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.900 kcal (2) G-P(sol) polarization free energy of solvation -30.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds