Wall clock time and date at job start Mon Mar 30 2020 06:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35923 * 116.99637 * 2 1 4 4 C 1.38708 * 120.03458 * 0.25129 * 3 2 1 5 5 C 1.38331 * 119.93255 * 180.31255 * 4 3 2 6 6 F 1.35101 * 120.00127 * 179.67902 * 5 4 3 7 7 C 1.38606 * 119.99313 * 359.71138 * 5 4 3 8 8 Cl 1.73604 * 119.96851 * 179.97438 * 7 5 4 9 9 C 1.38291 * 120.06493 * 359.97438 * 7 5 4 10 10 C 1.38192 * 120.06374 * 0.02833 * 9 7 5 11 11 C 1.50700 * 119.99474 * 179.97438 * 10 9 7 12 12 H 1.09004 * 109.47210 * 144.99900 * 11 10 9 13 13 N 1.46899 * 109.47483 * 24.99570 * 11 10 9 14 14 C 1.50702 * 109.46869 * 264.99607 * 11 10 9 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 11 10 16 16 C 1.37884 * 119.99942 * 179.72213 * 14 11 10 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 11 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 11 19 19 H 1.48501 * 109.47188 * 90.00793 * 18 16 14 20 20 H 1.48501 * 109.47085 * 210.00372 * 18 16 14 21 21 H 1.48498 * 109.47634 * 330.00608 * 18 16 14 22 22 H 1.08994 * 109.47453 * 300.00178 * 1 2 3 23 23 H 1.09000 * 109.47202 * 59.99743 * 1 2 3 24 24 H 1.08995 * 109.46868 * 179.97438 * 1 2 3 25 25 H 1.07996 * 120.03575 * 0.02562 * 4 3 2 26 26 H 1.08002 * 119.96878 * 180.02562 * 9 7 5 27 27 H 1.00902 * 111.00292 * 176.04974 * 13 11 10 28 28 H 1.00903 * 111.00048 * 300.00270 * 13 11 10 29 29 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2912 2.3748 0.0053 5 6 1.9213 3.6063 -0.0013 6 9 1.1874 4.7406 -0.0027 7 6 3.3056 3.6763 -0.0070 8 17 4.0957 5.2221 -0.0159 9 6 4.0580 2.5160 -0.0057 10 6 3.4311 1.2844 0.0008 11 6 4.2526 0.0210 0.0016 12 1 3.7472 -0.7406 0.5956 13 7 5.5742 0.2965 0.5807 14 6 4.4169 -0.4723 -1.4129 15 1 3.9714 0.0747 -2.2307 16 6 5.1412 -1.6184 -1.6636 17 7 5.6839 -2.2842 -0.6678 18 14 5.3512 -2.2256 -3.4176 19 1 6.5733 -1.6222 -4.0073 20 1 5.4804 -3.7049 -3.4172 21 1 4.1671 -1.8323 -4.2228 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 0.2127 2.3196 0.0098 26 1 5.1365 2.5724 -0.0098 27 1 6.1212 -0.5485 0.6518 28 1 6.0631 0.9999 0.0475 29 1 6.1932 -3.0908 -0.8441 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260439533.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:20 Heat of formation + Delta-G solvation = -83.953487 kcal Electronic energy + Delta-G solvation = -17225.290856 eV Core-core repulsion = 14088.299439 eV Total energy + Delta-G solvation = -3136.991417 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -50.00464 -41.22567 -38.64586 -37.45371 -36.31398 -33.52324 -31.18481 -30.84440 -28.07712 -27.87842 -24.91939 -23.45094 -21.95880 -19.53192 -18.59836 -18.22830 -17.34424 -17.09380 -16.96510 -16.36125 -16.29845 -15.73985 -15.47583 -14.83209 -14.52215 -14.41703 -13.90049 -13.53539 -13.28295 -12.90021 -12.84599 -12.69501 -12.53788 -12.38841 -12.07047 -11.95364 -11.48805 -11.46279 -10.69079 -9.87068 -9.27630 -8.99689 -8.08245 -6.32551 0.06192 0.12345 1.04533 1.39124 1.41736 1.50877 2.35036 2.38661 2.53710 3.05110 3.09410 3.62021 3.82811 4.06706 4.32770 4.42585 4.46381 4.60637 4.70319 4.80470 4.90020 5.03933 5.12351 5.56949 5.67050 5.71997 6.07122 6.43785 6.66842 6.92874 7.12913 7.41773 8.86383 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.020876 B = 0.007284 C = 0.006138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.941110 B = 3842.990221 C = 4560.493161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.318 6.318 3 C 0.153 3.847 4 C -0.227 4.227 5 C 0.123 3.877 6 F -0.128 7.128 7 C -0.112 4.112 8 Cl -0.053 7.053 9 C -0.042 4.042 10 C -0.087 4.087 11 C 0.258 3.742 12 H 0.021 0.979 13 N -0.844 5.844 14 C -0.549 4.549 15 H 0.044 0.956 16 C 0.026 3.974 17 N -0.915 5.915 18 Si 0.955 3.045 19 H -0.275 1.275 20 H -0.282 1.282 21 H -0.275 1.275 22 H 0.073 0.927 23 H 0.068 0.932 24 H 0.115 0.885 25 H 0.175 0.825 26 H 0.149 0.851 27 H 0.348 0.652 28 H 0.319 0.681 29 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.288 8.673 0.865 12.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.231 6.231 3 C 0.106 3.894 4 C -0.247 4.247 5 C 0.103 3.897 6 F -0.107 7.107 7 C -0.140 4.140 8 Cl -0.025 7.025 9 C -0.061 4.061 10 C -0.089 4.089 11 C 0.148 3.852 12 H 0.039 0.961 13 N -0.373 5.373 14 C -0.588 4.588 15 H 0.062 0.938 16 C -0.175 4.175 17 N -0.554 5.554 18 Si 0.781 3.219 19 H -0.200 1.200 20 H -0.208 1.208 21 H -0.200 1.200 22 H 0.092 0.908 23 H 0.087 0.913 24 H 0.133 0.867 25 H 0.192 0.808 26 H 0.167 0.833 27 H 0.163 0.837 28 H 0.129 0.871 29 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.480 8.716 1.575 12.263 hybrid contribution 0.349 -0.505 -1.761 1.865 sum -8.131 8.211 -0.186 11.557 Atomic orbital electron populations 1.23450 0.76504 1.05699 1.02593 1.86299 1.23425 1.25783 1.87556 1.18710 0.91427 0.84683 0.94551 1.21146 1.02169 0.89244 1.12122 1.16944 0.87001 0.82375 1.03379 1.91497 1.76748 1.48552 1.93885 1.20791 0.91051 0.88370 1.13748 1.98333 1.80103 1.26730 1.97289 1.20567 1.00889 0.88323 0.96304 1.19834 0.91532 0.96565 1.00987 1.17516 0.87325 0.87984 0.92397 0.96122 1.59541 1.06553 1.15618 1.55599 1.21898 1.33332 1.09927 0.93682 0.93779 1.25649 0.95061 0.96031 1.00727 1.69830 1.35240 1.18210 1.32142 0.85602 0.78386 0.77371 0.80502 1.20015 1.20785 1.19990 0.90825 0.91311 0.86676 0.80813 0.83320 0.83661 0.87067 0.92354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.27 9.81 113.37 1.11 1.38 15 2 O -0.32 -11.80 9.63 -92.68 -0.89 -12.69 15 3 C 0.15 5.76 6.66 22.49 0.15 5.90 15 4 C -0.23 -6.94 9.01 22.40 0.20 -6.74 15 5 C 0.12 3.91 7.27 22.38 0.16 4.07 15 6 F -0.13 -3.80 16.83 44.97 0.76 -3.04 15 7 C -0.11 -3.75 6.33 22.37 0.14 -3.61 15 8 Cl -0.05 -1.57 28.61 -2.72 -0.08 -1.65 15 9 C -0.04 -1.57 9.05 22.27 0.20 -1.37 15 10 C -0.09 -3.70 5.01 -19.76 -0.10 -3.80 15 11 C 0.26 12.77 2.67 43.42 0.12 12.89 15 12 H 0.02 1.18 7.70 -2.38 -0.02 1.16 15 13 N -0.84 -39.35 8.78 -174.95 -1.54 -40.89 15 14 C -0.55 -29.16 8.71 25.60 0.22 -28.94 15 15 H 0.04 2.38 7.74 -2.91 -0.02 2.36 15 16 C 0.03 1.35 5.38 84.66 0.46 1.81 15 17 N -0.91 -49.80 11.53 21.45 0.25 -49.56 15 18 Si 0.96 42.35 29.54 68.60 2.03 44.38 15 19 H -0.27 -11.86 7.11 99.48 0.71 -11.15 15 20 H -0.28 -12.30 7.11 99.48 0.71 -11.59 15 21 H -0.27 -12.13 7.11 99.48 0.71 -11.42 15 22 H 0.07 1.38 7.65 -2.39 -0.02 1.36 15 23 H 0.07 1.37 7.67 -2.39 -0.02 1.36 15 24 H 0.11 2.27 8.14 -2.39 -0.02 2.25 15 25 H 0.17 4.01 6.30 -2.91 -0.02 3.99 15 26 H 0.15 5.40 6.29 -2.91 -0.02 5.38 15 27 H 0.35 17.55 7.07 -89.69 -0.63 16.92 15 28 H 0.32 13.83 7.20 -89.69 -0.65 13.19 15 29 H 0.27 13.86 8.31 -92.70 -0.77 13.09 15 Total: -1.00 -58.06 270.20 3.12 -54.94 By element: Atomic # 1 Polarization: 26.97 SS G_CDS: -0.06 Total: 26.91 kcal Atomic # 6 Polarization: -21.06 SS G_CDS: 2.67 Total: -18.39 kcal Atomic # 7 Polarization: -89.16 SS G_CDS: -1.29 Total: -90.44 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: -0.89 Total: -12.69 kcal Atomic # 9 Polarization: -3.80 SS G_CDS: 0.76 Total: -3.04 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Atomic # 17 Polarization: -1.57 SS G_CDS: -0.08 Total: -1.65 kcal Total: -58.06 3.12 -54.94 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260439533.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.018 kcal (2) G-P(sol) polarization free energy of solvation -58.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds