Wall clock time and date at job start Mon Mar 30 2020 06:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35917 * 117.00224 * 2 1 4 4 C 1.38707 * 120.02818 * 0.02562 * 3 2 1 5 5 C 1.38335 * 119.93039 * 179.97438 * 4 3 2 6 6 F 1.35102 * 119.99914 * 180.02562 * 5 4 3 7 7 C 1.38604 * 119.99546 * 359.97438 * 5 4 3 8 8 Cl 1.73603 * 119.96679 * 180.02562 * 7 5 4 9 9 C 1.38291 * 120.06265 * 359.73143 * 7 5 4 10 10 C 1.38185 * 120.06466 * 0.54177 * 9 7 5 11 11 C 1.50703 * 119.99439 * 179.72858 * 10 9 7 12 12 H 1.09001 * 109.46796 * 219.72276 * 11 10 9 13 13 N 1.46890 * 109.47446 * 339.72859 * 11 10 9 14 14 C 1.50701 * 109.46977 * 99.73191 * 11 10 9 15 15 H 1.08004 * 119.99941 * 356.30954 * 14 11 10 16 16 C 1.37873 * 119.99976 * 176.31624 * 14 11 10 17 17 N 1.31510 * 120.00383 * 353.12885 * 16 14 11 18 18 Si 1.86800 * 120.00068 * 173.12908 * 16 14 11 19 19 H 1.48503 * 109.47114 * 265.18375 * 18 16 14 20 20 H 1.48498 * 109.47370 * 25.18180 * 18 16 14 21 21 H 1.48504 * 109.47107 * 145.18657 * 18 16 14 22 22 H 1.09005 * 109.47328 * 300.00394 * 1 2 3 23 23 H 1.08998 * 109.47211 * 60.00172 * 1 2 3 24 24 H 1.09006 * 109.47120 * 180.02562 * 1 2 3 25 25 H 1.07999 * 120.03650 * 0.02562 * 4 3 2 26 26 H 1.07999 * 119.96446 * 180.29611 * 9 7 5 27 27 H 1.00898 * 111.00327 * 66.74591 * 13 11 10 28 28 H 1.00901 * 111.00132 * 190.70083 * 13 11 10 29 29 H 0.96998 * 120.00630 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2912 2.3747 0.0005 5 6 1.9214 3.6062 0.0011 6 9 1.1875 4.7405 0.0021 7 6 3.3056 3.6762 0.0016 8 17 4.0957 5.2220 0.0030 9 6 4.0580 2.5158 0.0072 10 6 3.4312 1.2843 0.0010 11 6 4.2526 0.0209 0.0009 12 1 3.7908 -0.7127 -0.6599 13 7 5.6107 0.3198 -0.4722 14 6 4.3190 -0.5352 1.4000 15 1 3.8674 0.0062 2.2183 16 6 4.9564 -1.7348 1.6356 17 7 5.3874 -2.4597 0.6265 18 14 5.2076 -2.3307 3.3880 19 1 6.5551 -1.9234 3.8610 20 1 4.1722 -1.7315 4.2679 21 1 5.0954 -3.8110 3.4284 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 0.2126 2.3194 0.0014 26 1 5.1365 2.5723 0.0125 27 1 6.0996 0.9119 0.1824 28 1 6.1275 -0.5289 -0.6476 29 1 5.8362 -3.3035 0.7921 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260439538.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:23 Heat of formation + Delta-G solvation = -84.749789 kcal Electronic energy + Delta-G solvation = -17229.086433 eV Core-core repulsion = 14092.060486 eV Total energy + Delta-G solvation = -3137.025947 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.052 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.99671 -41.20500 -38.62297 -37.43486 -36.28317 -33.54636 -31.17441 -30.87952 -28.06041 -27.84681 -24.90628 -23.43374 -21.95400 -19.50589 -18.60035 -18.21430 -17.31529 -17.07707 -16.95187 -16.35246 -16.29258 -15.75425 -15.45035 -14.85523 -14.47956 -14.45229 -13.90143 -13.51441 -13.28953 -12.92551 -12.83814 -12.69515 -12.55757 -12.36517 -12.05356 -11.95107 -11.46817 -11.42191 -10.66070 -9.84951 -9.30142 -8.99148 -8.10096 -6.30275 0.07513 0.14234 1.05800 1.38757 1.42024 1.50924 2.36023 2.40421 2.55250 3.06405 3.10358 3.63931 3.82628 4.08656 4.32602 4.42638 4.47996 4.59641 4.70828 4.81851 4.93247 5.06492 5.14633 5.59282 5.67568 5.70109 6.08329 6.46040 6.70757 6.84654 7.09058 7.41070 8.87648 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.021347 B = 0.007246 C = 0.006120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.358696 B = 3863.478978 C = 4574.272128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.316 6.316 3 C 0.154 3.846 4 C -0.229 4.229 5 C 0.123 3.877 6 F -0.129 7.129 7 C -0.113 4.113 8 Cl -0.054 7.054 9 C -0.040 4.040 10 C -0.088 4.088 11 C 0.258 3.742 12 H 0.023 0.977 13 N -0.839 5.839 14 C -0.545 4.545 15 H 0.043 0.957 16 C 0.028 3.972 17 N -0.913 5.913 18 Si 0.952 3.048 19 H -0.274 1.274 20 H -0.275 1.275 21 H -0.284 1.284 22 H 0.068 0.932 23 H 0.073 0.927 24 H 0.114 0.886 25 H 0.173 0.827 26 H 0.152 0.848 27 H 0.323 0.677 28 H 0.341 0.659 29 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.577 8.935 -0.861 11.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.229 6.229 3 C 0.107 3.893 4 C -0.249 4.249 5 C 0.102 3.898 6 F -0.107 7.107 7 C -0.141 4.141 8 Cl -0.025 7.025 9 C -0.059 4.059 10 C -0.090 4.090 11 C 0.148 3.852 12 H 0.041 0.959 13 N -0.367 5.367 14 C -0.585 4.585 15 H 0.062 0.938 16 C -0.173 4.173 17 N -0.553 5.553 18 Si 0.778 3.222 19 H -0.200 1.200 20 H -0.200 1.200 21 H -0.210 1.210 22 H 0.086 0.914 23 H 0.091 0.909 24 H 0.132 0.868 25 H 0.191 0.809 26 H 0.169 0.831 27 H 0.133 0.867 28 H 0.153 0.847 29 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.750 9.096 -1.548 12.050 hybrid contribution 0.261 -0.689 1.709 1.861 sum -7.489 8.407 0.162 11.260 Atomic orbital electron populations 1.23437 0.76649 1.05607 1.02538 1.86318 1.23288 1.25782 1.87484 1.18733 0.91500 0.84636 0.94463 1.21141 1.02129 0.89297 1.12311 1.16954 0.87043 0.82339 1.03422 1.91495 1.76779 1.48573 1.93896 1.20808 0.91017 0.88407 1.13865 1.98332 1.80103 1.26776 1.97301 1.20596 1.01014 0.88181 0.96082 1.19851 0.91461 0.96606 1.01066 1.17483 0.86751 0.87704 0.93285 0.95930 1.59472 1.05238 1.22139 1.49804 1.21830 1.36182 1.06190 0.94294 0.93844 1.25615 0.95255 0.95991 1.00412 1.69961 1.39812 1.13787 1.31693 0.85642 0.78459 0.77279 0.80783 1.19988 1.19992 1.20985 0.91355 0.90854 0.86802 0.80935 0.83081 0.86681 0.84698 0.92513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.28 9.81 113.37 1.11 1.40 15 2 O -0.32 -11.91 9.73 -92.61 -0.90 -12.82 15 3 C 0.15 5.81 6.65 22.49 0.15 5.96 15 4 C -0.23 -7.07 9.01 22.41 0.20 -6.87 15 5 C 0.12 3.91 7.27 22.38 0.16 4.07 15 6 F -0.13 -3.84 16.83 44.97 0.76 -3.08 15 7 C -0.11 -3.79 6.33 22.37 0.14 -3.65 15 8 Cl -0.05 -1.58 28.61 -2.72 -0.08 -1.66 15 9 C -0.04 -1.48 9.05 22.27 0.20 -1.28 15 10 C -0.09 -3.71 5.04 -19.76 -0.10 -3.81 15 11 C 0.26 12.63 2.47 43.43 0.11 12.74 15 12 H 0.02 1.28 7.85 -2.39 -0.02 1.26 15 13 N -0.84 -38.03 8.47 -174.97 -1.48 -39.52 15 14 C -0.55 -28.76 8.61 25.60 0.22 -28.54 15 15 H 0.04 2.34 7.75 -2.91 -0.02 2.32 15 16 C 0.03 1.47 5.36 84.65 0.45 1.93 15 17 N -0.91 -49.84 12.16 21.45 0.26 -49.58 15 18 Si 0.95 42.23 29.54 68.60 2.03 44.26 15 19 H -0.27 -11.83 7.11 99.48 0.71 -11.12 15 20 H -0.28 -12.14 7.11 99.48 0.71 -11.44 15 21 H -0.28 -12.45 7.11 99.48 0.71 -11.74 15 22 H 0.07 1.41 7.66 -2.38 -0.02 1.39 15 23 H 0.07 1.42 7.66 -2.39 -0.02 1.40 15 24 H 0.11 2.34 8.14 -2.38 -0.02 2.32 15 25 H 0.17 4.06 6.30 -2.91 -0.02 4.04 15 26 H 0.15 5.44 6.43 -2.91 -0.02 5.42 15 27 H 0.32 13.69 7.62 -89.70 -0.68 13.01 15 28 H 0.34 16.56 7.83 -89.69 -0.70 15.85 15 29 H 0.27 13.83 8.31 -92.71 -0.77 13.06 15 Total: -1.00 -57.75 271.80 3.06 -54.68 By element: Atomic # 1 Polarization: 25.95 SS G_CDS: -0.17 Total: 25.78 kcal Atomic # 6 Polarization: -20.72 SS G_CDS: 2.65 Total: -18.06 kcal Atomic # 7 Polarization: -87.87 SS G_CDS: -1.22 Total: -89.09 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: -0.90 Total: -12.82 kcal Atomic # 9 Polarization: -3.84 SS G_CDS: 0.76 Total: -3.08 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Atomic # 17 Polarization: -1.58 SS G_CDS: -0.08 Total: -1.66 kcal Total: -57.75 3.06 -54.68 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260439538.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.069 kcal (2) G-P(sol) polarization free energy of solvation -57.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds