Wall clock time and date at job start Mon Mar 30 2020 06:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35946 * 117.00012 * 2 1 4 4 C 1.38681 * 120.05896 * 0.02562 * 3 2 1 5 5 C 1.38176 * 119.99369 * 179.97438 * 4 3 2 6 6 C 1.50701 * 119.94877 * 180.02562 * 5 4 3 7 7 H 1.09000 * 109.47173 * 19.99684 * 6 5 4 8 8 N 1.46901 * 109.47435 * 139.99991 * 6 5 4 9 9 C 1.50699 * 109.47069 * 259.99743 * 6 5 4 10 10 H 1.08000 * 120.00174 * 359.97438 * 9 6 5 11 11 C 1.37883 * 120.00275 * 179.97438 * 9 6 5 12 12 N 1.31512 * 119.99709 * 0.02562 * 11 9 6 13 13 Si 1.86795 * 119.99999 * 180.02562 * 11 9 6 14 14 H 1.48498 * 109.47184 * 60.00303 * 13 11 9 15 15 H 1.48503 * 109.47021 * 179.97438 * 13 11 9 16 16 H 1.48495 * 109.47251 * 299.99835 * 13 11 9 17 17 C 1.38254 * 120.10858 * 0.02562 * 5 4 3 18 18 C 1.38363 * 120.10949 * 0.02562 * 17 5 4 19 19 Cl 1.73600 * 119.99894 * 179.97438 * 18 17 5 20 20 C 1.38440 * 120.00442 * 359.69792 * 18 17 5 21 21 F 1.35106 * 120.05222 * 180.29977 * 20 18 17 22 22 H 1.09001 * 109.47103 * 300.00293 * 1 2 3 23 23 H 1.09004 * 109.47054 * 59.99797 * 1 2 3 24 24 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 25 25 H 1.07998 * 120.00280 * 359.95288 * 4 3 2 26 26 H 1.00896 * 111.00283 * 59.99939 * 8 6 5 27 27 H 1.00899 * 111.00047 * 183.95435 * 8 6 5 28 28 H 0.96998 * 120.00100 * 179.97438 * 12 11 9 29 29 H 1.07999 * 119.94861 * 179.97438 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2921 2.3751 0.0005 5 6 1.9208 3.6056 0.0011 6 6 1.1004 4.8697 0.0022 7 1 0.0927 4.6484 0.3539 8 7 1.7240 5.8575 0.8929 9 6 1.0333 5.4263 -1.3966 10 1 1.5350 4.9160 -2.2055 11 6 0.3314 6.5871 -1.6438 12 7 -0.2790 7.2088 -0.6588 13 14 0.2478 7.2765 -3.3779 14 1 -0.3826 6.2776 -4.2779 15 1 -0.5616 8.5216 -3.3770 16 1 1.6204 7.5783 -3.8574 17 6 3.3014 3.6790 0.0005 18 6 4.0581 2.5206 -0.0011 19 17 5.7915 2.6161 -0.0024 20 6 3.4330 1.2853 0.0042 21 9 4.1709 0.1536 0.0087 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 0.2136 2.3198 0.0002 26 1 2.6598 6.0795 0.5878 27 1 1.1588 6.6905 0.9612 28 1 -0.7725 8.0256 -0.8326 29 1 3.7901 4.6421 0.0005 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260451434.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:59 Heat of formation + Delta-G solvation = -86.579042 kcal Electronic energy + Delta-G solvation = -17060.905431 eV Core-core repulsion = 13923.800161 eV Total energy + Delta-G solvation = -3137.105269 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.87791 -41.13937 -39.03197 -37.67769 -36.16270 -33.45159 -31.41910 -30.75231 -28.27669 -27.83403 -24.90899 -23.59715 -22.02552 -19.24284 -18.66277 -18.13789 -17.92174 -17.24234 -16.96919 -16.30003 -16.11550 -15.85093 -15.40898 -14.88449 -14.61694 -14.41008 -13.95251 -13.48480 -13.29874 -12.89517 -12.85564 -12.75308 -12.54199 -12.39912 -12.16409 -12.08806 -11.62207 -11.54765 -10.70946 -9.73859 -9.29590 -9.15633 -8.13599 -6.38904 -0.06893 0.17759 0.84129 1.40699 1.43052 1.49708 2.20796 2.33521 2.50526 3.05472 3.07840 3.71641 3.75818 4.12181 4.27075 4.38598 4.38914 4.60220 4.71397 4.79662 4.89677 5.05290 5.12400 5.44083 5.63965 5.74966 6.01355 6.19891 6.61025 6.89450 7.10346 7.37519 8.80943 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.019906 B = 0.006918 C = 0.005834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.261117 B = 4046.648608 C = 4798.261132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.322 6.322 3 C 0.111 3.889 4 C -0.179 4.179 5 C 0.000 4.000 6 C 0.246 3.754 7 H 0.028 0.972 8 N -0.843 5.843 9 C -0.562 4.562 10 H 0.050 0.950 11 C 0.030 3.970 12 N -0.911 5.911 13 Si 0.954 3.046 14 H -0.275 1.275 15 H -0.283 1.283 16 H -0.274 1.274 17 C -0.112 4.112 18 C -0.034 4.034 19 Cl -0.041 7.041 20 C 0.037 3.963 21 F -0.132 7.132 22 H 0.066 0.934 23 H 0.063 0.937 24 H 0.131 0.869 25 H 0.153 0.847 26 H 0.320 0.680 27 H 0.349 0.651 28 H 0.269 0.731 29 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.371 -9.471 0.993 10.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.236 6.236 3 C 0.064 3.936 4 C -0.198 4.198 5 C -0.001 4.001 6 C 0.136 3.864 7 H 0.046 0.954 8 N -0.372 5.372 9 C -0.602 4.602 10 H 0.068 0.932 11 C -0.171 4.171 12 N -0.550 5.550 13 Si 0.780 3.220 14 H -0.200 1.200 15 H -0.208 1.208 16 H -0.199 1.199 17 C -0.131 4.131 18 C -0.061 4.061 19 Cl -0.012 7.012 20 C 0.016 3.984 21 F -0.111 7.111 22 H 0.085 0.915 23 H 0.082 0.918 24 H 0.149 0.851 25 H 0.170 0.830 26 H 0.130 0.870 27 H 0.164 0.836 28 H 0.078 0.922 29 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 3.411 -10.101 1.627 10.785 hybrid contribution -0.113 1.124 -1.741 2.075 sum 3.298 -8.977 -0.114 9.564 Atomic orbital electron populations 1.23468 0.75583 1.06137 1.02584 1.86065 1.24082 1.24821 1.88590 1.18674 0.89843 0.86111 0.98956 1.21220 1.01354 0.90258 1.07009 1.20167 0.93410 0.95608 0.90946 1.17838 0.91701 0.86373 0.90532 0.95388 1.59498 1.06310 1.18260 1.53159 1.21937 1.33663 1.09349 0.95207 0.93202 1.25626 0.94030 0.96880 1.00550 1.69807 1.33682 1.18731 1.32757 0.85666 0.78179 0.77635 0.80490 1.20019 1.20815 1.19903 1.20687 0.93055 0.96925 1.02413 1.20633 0.86128 0.92695 1.06689 1.98350 1.07480 1.98539 1.96861 1.16509 0.86461 0.81642 1.13771 1.91458 1.76363 1.48554 1.94704 0.91503 0.91838 0.85071 0.82986 0.86950 0.83560 0.92163 0.83945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.81 113.37 1.11 1.45 15 2 O -0.32 -9.65 10.36 -92.94 -0.96 -10.61 15 3 C 0.11 3.77 6.69 22.53 0.15 3.92 15 4 C -0.18 -6.36 8.66 22.36 0.19 -6.16 15 5 C 0.00 0.00 4.89 -19.88 -0.10 -0.10 15 6 C 0.25 11.34 2.95 43.42 0.13 11.47 15 7 H 0.03 1.42 8.00 -2.39 -0.02 1.40 15 8 N -0.84 -37.46 9.02 -174.95 -1.58 -39.04 15 9 C -0.56 -28.19 8.70 25.60 0.22 -27.97 15 10 H 0.05 2.54 7.74 -2.91 -0.02 2.51 15 11 C 0.03 1.53 5.38 84.66 0.46 1.98 15 12 N -0.91 -47.24 11.54 21.45 0.25 -46.99 15 13 Si 0.95 40.59 29.54 68.60 2.03 42.62 15 14 H -0.27 -11.59 7.11 99.48 0.71 -10.88 15 15 H -0.28 -11.82 7.11 99.48 0.71 -11.12 15 16 H -0.27 -11.52 7.11 99.48 0.71 -10.81 15 17 C -0.11 -4.14 9.07 22.30 0.20 -3.94 15 18 C -0.03 -1.17 6.32 22.35 0.14 -1.03 15 19 Cl -0.04 -1.25 28.61 -2.72 -0.08 -1.33 15 20 C 0.04 1.30 7.28 22.47 0.16 1.46 15 21 F -0.13 -4.60 16.68 44.97 0.75 -3.85 15 22 H 0.07 1.30 7.66 -2.39 -0.02 1.28 15 23 H 0.06 1.29 7.66 -2.38 -0.02 1.27 15 24 H 0.13 1.85 8.14 -2.39 -0.02 1.84 15 25 H 0.15 4.88 6.28 -2.91 -0.02 4.86 15 26 H 0.32 13.41 7.33 -89.70 -0.66 12.75 15 27 H 0.35 16.76 7.08 -89.70 -0.63 16.13 15 28 H 0.27 13.39 8.31 -92.71 -0.77 12.62 15 29 H 0.14 5.15 6.66 -2.91 -0.02 5.13 15 Total: -1.00 -54.14 271.69 3.00 -51.14 By element: Atomic # 1 Polarization: 27.04 SS G_CDS: -0.08 Total: 26.96 kcal Atomic # 6 Polarization: -21.58 SS G_CDS: 2.67 Total: -18.91 kcal Atomic # 7 Polarization: -84.70 SS G_CDS: -1.33 Total: -86.03 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: -0.96 Total: -10.61 kcal Atomic # 9 Polarization: -4.60 SS G_CDS: 0.75 Total: -3.85 kcal Atomic # 14 Polarization: 40.59 SS G_CDS: 2.03 Total: 42.62 kcal Atomic # 17 Polarization: -1.25 SS G_CDS: -0.08 Total: -1.33 kcal Total: -54.14 3.00 -51.14 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260451434.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.441 kcal (2) G-P(sol) polarization free energy of solvation -54.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds