Wall clock time and date at job start Mon Mar 30 2020 06:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35946 * 116.99382 * 2 1 4 4 C 1.38712 * 120.02834 * 0.02562 * 3 2 1 5 5 C 1.38228 * 119.95542 * 179.97438 * 4 3 2 6 6 Cl 1.73601 * 119.99516 * 179.97438 * 5 4 3 7 7 C 1.38588 * 120.01035 * 0.02562 * 5 4 3 8 8 F 1.35105 * 119.97734 * 179.97438 * 7 5 4 9 9 C 1.38400 * 120.04935 * 359.95690 * 7 5 4 10 10 C 1.50697 * 119.98008 * 180.02562 * 9 7 5 11 11 H 1.08998 * 109.47228 * 325.02363 * 10 9 7 12 12 N 1.46900 * 109.47217 * 205.02356 * 10 9 7 13 13 C 1.50697 * 109.47142 * 85.02081 * 10 9 7 14 14 H 1.08006 * 119.99928 * 0.02562 * 13 10 9 15 15 C 1.37882 * 120.00342 * 179.97438 * 13 10 9 16 16 N 1.31512 * 119.99414 * 0.02562 * 15 13 10 17 17 Si 1.86790 * 120.00249 * 180.02562 * 15 13 10 18 18 H 1.48504 * 109.47048 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47438 * 120.00226 * 17 15 13 20 20 H 1.48504 * 109.47113 * 240.00381 * 17 15 13 21 21 C 1.38193 * 120.03771 * 0.04213 * 9 7 5 22 22 H 1.09003 * 109.46839 * 60.00698 * 1 2 3 23 23 H 1.09002 * 109.46775 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47236 * 300.00309 * 1 2 3 25 25 H 1.07993 * 120.02281 * 359.95819 * 4 3 2 26 26 H 1.00893 * 111.00235 * 176.05152 * 12 10 9 27 27 H 1.00905 * 110.99538 * 299.99864 * 12 10 9 28 28 H 0.96996 * 120.00033 * 179.97438 * 16 15 13 29 29 H 1.08000 * 119.99948 * 180.24939 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2114 0.0000 4 6 1.2911 2.3750 0.0005 5 6 1.9201 3.6059 0.0011 6 17 0.9761 5.0628 0.0011 7 6 3.3041 3.6770 0.0005 8 9 3.9182 4.8805 0.0005 9 6 4.0578 2.5162 0.0004 10 6 5.5626 2.5954 0.0004 11 1 5.8812 3.4555 -0.5886 12 7 6.1176 1.3680 -0.5857 13 6 6.0578 2.7448 1.4158 14 1 5.3532 2.7785 2.2337 15 6 7.4104 2.8373 1.6669 16 7 8.2683 2.7957 0.6711 17 14 8.0242 3.0217 3.4215 18 1 6.8665 3.0413 4.3514 19 1 8.9101 1.8786 3.7587 20 1 8.7839 4.2913 3.5493 21 6 3.4310 1.2846 -0.0002 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 0.2126 2.3193 0.0003 26 1 7.1226 1.4233 -0.6561 27 1 5.8364 0.5558 -0.0571 28 1 9.2199 2.8612 0.8476 29 1 4.0197 0.3791 0.0038 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260476362.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:36 Heat of formation + Delta-G solvation = -85.519878 kcal Electronic energy + Delta-G solvation = -17165.157027 eV Core-core repulsion = 14028.097686 eV Total energy + Delta-G solvation = -3137.059340 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.76699 -41.15024 -38.75871 -37.77353 -36.22886 -33.60657 -31.28876 -30.73770 -28.10877 -27.93763 -25.09777 -23.48496 -21.88109 -19.11003 -18.70163 -18.29759 -18.18436 -16.84166 -16.71028 -16.35636 -16.20699 -15.83335 -15.34050 -14.84186 -14.48190 -14.20825 -13.90157 -13.89002 -13.28713 -13.10826 -12.84946 -12.80684 -12.71284 -12.19715 -12.05316 -12.02949 -11.62583 -11.45451 -10.76724 -9.84530 -9.30555 -9.08377 -8.17422 -6.42552 -0.01019 0.16535 0.88257 1.35740 1.38972 1.50026 2.29149 2.33169 2.49924 3.01322 3.21644 3.74130 3.86800 4.07109 4.28362 4.46718 4.47961 4.54295 4.66486 4.78080 4.86692 5.08350 5.13285 5.50918 5.59773 5.63608 5.94771 6.33979 6.56990 6.82676 7.06280 7.33149 8.78979 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.020619 B = 0.007189 C = 0.006051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.631232 B = 3893.708665 C = 4626.149442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.320 6.320 3 C 0.138 3.862 4 C -0.183 4.183 5 C -0.034 4.034 6 Cl -0.045 7.045 7 C 0.042 3.958 8 F -0.142 7.142 9 C -0.037 4.037 10 C 0.248 3.752 11 H 0.017 0.983 12 N -0.838 5.838 13 C -0.559 4.559 14 H 0.046 0.954 15 C 0.026 3.974 16 N -0.912 5.912 17 Si 0.961 3.039 18 H -0.273 1.273 19 H -0.272 1.272 20 H -0.280 1.280 21 C -0.120 4.120 22 H 0.070 0.930 23 H 0.125 0.875 24 H 0.068 0.932 25 H 0.177 0.823 26 H 0.350 0.650 27 H 0.323 0.677 28 H 0.270 0.730 29 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.812 -3.733 -0.697 16.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.234 6.234 3 C 0.092 3.908 4 C -0.202 4.202 5 C -0.062 4.062 6 Cl -0.016 7.016 7 C 0.021 3.979 8 F -0.121 7.121 9 C -0.039 4.039 10 C 0.137 3.863 11 H 0.035 0.965 12 N -0.368 5.368 13 C -0.599 4.599 14 H 0.065 0.935 15 C -0.175 4.175 16 N -0.551 5.551 17 Si 0.786 3.214 18 H -0.197 1.197 19 H -0.198 1.198 20 H -0.206 1.206 21 C -0.139 4.139 22 H 0.088 0.912 23 H 0.143 0.857 24 H 0.086 0.914 25 H 0.195 0.805 26 H 0.165 0.835 27 H 0.134 0.866 28 H 0.079 0.921 29 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -16.033 -3.549 -1.409 16.482 hybrid contribution 1.120 0.844 1.688 2.195 sum -14.913 -2.705 0.279 15.159 Atomic orbital electron populations 1.23491 0.75933 1.06159 1.02669 1.86124 1.23887 1.25024 1.88335 1.18734 0.91363 0.84827 0.95884 1.21040 1.01899 0.88420 1.08799 1.20641 0.88940 0.89830 1.06791 1.98347 1.71172 1.35208 1.96889 1.17403 0.89388 0.81093 1.09979 1.91444 1.83521 1.42821 1.94335 1.20140 0.97584 0.91149 0.94988 1.17648 0.84939 0.90843 0.92856 0.96512 1.59492 1.17874 1.03919 1.55546 1.21898 0.92399 1.52288 0.93289 0.93533 1.25710 0.96757 0.93735 1.01298 1.69830 1.02830 1.50148 1.32334 0.85461 0.78139 0.77929 0.79823 1.19744 1.19775 1.20615 1.20216 0.91816 0.97754 1.04116 0.91186 0.85651 0.91380 0.80531 0.83501 0.86636 0.92070 0.83731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.81 113.37 1.11 1.28 15 2 O -0.32 -8.23 10.50 -92.94 -0.98 -9.20 15 3 C 0.14 4.27 6.68 22.49 0.15 4.42 15 4 C -0.18 -5.12 8.82 22.38 0.20 -4.92 15 5 C -0.03 -1.16 6.32 22.35 0.14 -1.02 15 6 Cl -0.05 -1.32 28.61 -2.72 -0.08 -1.40 15 7 C 0.04 1.77 7.21 22.39 0.16 1.93 15 8 F -0.14 -6.61 16.13 44.97 0.73 -5.88 15 9 C -0.04 -1.63 5.00 -19.84 -0.10 -1.73 15 10 C 0.25 12.75 2.72 43.42 0.12 12.87 15 11 H 0.02 1.00 7.79 -2.39 -0.02 0.98 15 12 N -0.84 -39.89 8.79 -174.96 -1.54 -41.43 15 13 C -0.56 -30.68 8.71 25.60 0.22 -30.46 15 14 H 0.05 2.60 7.74 -2.91 -0.02 2.57 15 15 C 0.03 1.40 5.38 84.66 0.46 1.85 15 16 N -0.91 -50.52 11.54 21.45 0.25 -50.28 15 17 Si 0.96 43.15 29.54 68.60 2.03 45.18 15 18 H -0.27 -12.18 7.11 99.48 0.71 -11.48 15 19 H -0.27 -11.73 7.11 99.48 0.71 -11.02 15 20 H -0.28 -12.47 7.11 99.48 0.71 -11.77 15 21 C -0.12 -4.53 9.20 22.37 0.21 -4.33 15 22 H 0.07 0.86 7.66 -2.39 -0.02 0.84 15 23 H 0.13 1.21 8.14 -2.39 -0.02 1.19 15 24 H 0.07 0.86 7.66 -2.39 -0.02 0.84 15 25 H 0.18 3.49 6.30 -2.91 -0.02 3.47 15 26 H 0.35 17.86 7.08 -89.70 -0.63 17.23 15 27 H 0.32 14.19 7.20 -89.69 -0.65 13.54 15 28 H 0.27 14.11 8.31 -92.71 -0.77 13.34 15 29 H 0.15 5.34 6.29 -2.91 -0.02 5.33 15 Total: -1.00 -61.05 270.44 3.01 -58.04 By element: Atomic # 1 Polarization: 25.13 SS G_CDS: -0.06 Total: 25.07 kcal Atomic # 6 Polarization: -22.77 SS G_CDS: 2.67 Total: -20.10 kcal Atomic # 7 Polarization: -90.42 SS G_CDS: -1.29 Total: -91.71 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: -0.98 Total: -9.20 kcal Atomic # 9 Polarization: -6.61 SS G_CDS: 0.73 Total: -5.88 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -0.08 Total: -1.40 kcal Total: -61.05 3.01 -58.04 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260476362.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.479 kcal (2) G-P(sol) polarization free energy of solvation -61.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds