Wall clock time and date at job start Mon Mar 30 2020 06:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35953 * 116.99648 * 2 1 4 4 C 1.38710 * 120.02345 * 359.97438 * 3 2 1 5 5 C 1.38233 * 119.95387 * 180.02562 * 4 3 2 6 6 Cl 1.73605 * 119.99288 * 180.02562 * 5 4 3 7 7 C 1.38588 * 120.01221 * 359.97438 * 5 4 3 8 8 F 1.35092 * 119.97978 * 180.02562 * 7 5 4 9 9 C 1.38400 * 120.04112 * 0.02562 * 7 5 4 10 10 C 1.50704 * 119.97118 * 179.97438 * 9 7 5 11 11 H 1.09002 * 109.46920 * 40.00530 * 10 9 7 12 12 N 1.46904 * 109.46890 * 159.99886 * 10 9 7 13 13 C 1.50697 * 109.47370 * 280.00271 * 10 9 7 14 14 H 1.08001 * 119.99712 * 354.47251 * 13 10 9 15 15 C 1.37877 * 120.00077 * 174.48108 * 13 10 9 16 16 N 1.31515 * 120.00205 * 163.83354 * 15 13 10 17 17 Si 1.86801 * 119.99637 * 343.82865 * 15 13 10 18 18 H 1.48504 * 109.47044 * 270.00013 * 17 15 13 19 19 H 1.48492 * 109.47426 * 30.00203 * 17 15 13 20 20 H 1.48503 * 109.46820 * 150.00371 * 17 15 13 21 21 C 1.38181 * 120.04962 * 0.27694 * 9 7 5 22 22 H 1.09007 * 109.47051 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47433 * 300.00171 * 1 2 3 24 24 H 1.08999 * 109.47084 * 60.00977 * 1 2 3 25 25 H 1.07998 * 120.02835 * 0.02699 * 4 3 2 26 26 H 1.00904 * 110.99471 * 66.10573 * 12 10 9 27 27 H 1.00901 * 110.99943 * 190.05457 * 12 10 9 28 28 H 0.96994 * 119.99747 * 354.91288 * 16 15 13 29 29 H 1.07995 * 120.00879 * 179.72125 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2114 0.0000 4 6 1.2910 2.3750 -0.0005 5 6 1.9200 3.6059 -0.0011 6 17 0.9760 5.0629 -0.0011 7 6 3.3041 3.6771 -0.0005 8 9 3.9181 4.8805 -0.0005 9 6 4.0576 2.5163 0.0000 10 6 5.5626 2.5955 0.0000 11 1 5.8839 3.4011 0.6603 12 7 6.1200 1.3218 0.4743 13 6 6.0513 2.8678 -1.3993 14 1 5.3517 2.8842 -2.2219 15 6 7.3915 3.0957 -1.6293 16 7 7.8716 3.0175 -2.8512 17 14 8.5253 3.5156 -0.2053 18 1 8.5614 4.9885 -0.0191 19 1 8.0219 2.8721 1.0346 20 1 9.8939 3.0202 -0.4997 21 6 3.4311 1.2847 -0.0058 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 0.2125 2.3194 -0.0005 26 1 5.9197 0.5756 -0.1746 27 1 7.1122 1.4006 0.6397 28 1 7.3000 2.7278 -3.5792 29 1 4.0197 0.3792 -0.0099 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260476365.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:38 Heat of formation + Delta-G solvation = -83.714138 kcal Electronic energy + Delta-G solvation = -17225.229933 eV Core-core repulsion = 14088.248895 eV Total energy + Delta-G solvation = -3136.981038 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.82296 -41.20583 -38.84238 -37.84699 -36.32988 -34.02130 -31.51360 -30.88034 -28.09905 -27.86340 -24.77373 -23.57074 -21.74484 -19.93359 -19.13453 -18.38589 -18.27363 -16.94999 -16.71165 -16.41668 -16.19459 -15.60104 -15.40292 -14.95245 -14.60095 -14.39220 -14.20201 -13.97776 -13.86326 -13.16959 -12.84756 -12.75267 -12.39518 -12.10139 -11.95352 -11.82938 -11.55234 -11.40354 -10.69307 -9.95857 -9.58129 -9.17169 -8.72330 -6.52132 -0.06538 0.10127 0.83654 1.43536 1.48468 1.66668 2.25137 2.39997 2.40399 2.95760 3.15773 3.63510 3.79868 3.99292 4.11320 4.35124 4.42701 4.45441 4.50099 4.69371 4.80632 4.95792 5.02901 5.36427 5.47466 5.63295 5.90975 6.28258 6.35219 6.45262 6.75875 7.27039 8.51733 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.022046 B = 0.007535 C = 0.006155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.782697 B = 3715.031705 C = 4548.333967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.320 6.320 3 C 0.136 3.864 4 C -0.182 4.182 5 C -0.036 4.036 6 Cl -0.045 7.045 7 C 0.043 3.957 8 F -0.140 7.140 9 C -0.035 4.035 10 C 0.220 3.780 11 H 0.046 0.954 12 N -0.839 5.839 13 C -0.622 4.622 14 H 0.015 0.985 15 C -0.009 4.009 16 N -0.926 5.926 17 Si 1.081 2.919 18 H -0.279 1.279 19 H -0.235 1.235 20 H -0.279 1.279 21 C -0.120 4.120 22 H 0.126 0.874 23 H 0.071 0.929 24 H 0.066 0.934 25 H 0.177 0.823 26 H 0.335 0.665 27 H 0.334 0.666 28 H 0.255 0.745 29 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.197 -4.087 8.366 17.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.234 6.234 3 C 0.090 3.910 4 C -0.201 4.201 5 C -0.064 4.064 6 Cl -0.015 7.015 7 C 0.022 3.978 8 F -0.119 7.119 9 C -0.037 4.037 10 C 0.110 3.890 11 H 0.064 0.936 12 N -0.370 5.370 13 C -0.661 4.661 14 H 0.034 0.966 15 C -0.210 4.210 16 N -0.560 5.560 17 Si 0.901 3.099 18 H -0.205 1.205 19 H -0.158 1.158 20 H -0.204 1.204 21 C -0.139 4.139 22 H 0.144 0.856 23 H 0.090 0.910 24 H 0.084 0.916 25 H 0.194 0.806 26 H 0.147 0.853 27 H 0.149 0.851 28 H 0.064 0.936 29 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -14.138 -3.602 9.361 17.335 hybrid contribution -1.045 0.445 -2.043 2.337 sum -15.183 -3.157 7.319 17.148 Atomic orbital electron populations 1.23493 0.75906 1.06208 1.02648 1.86123 1.23909 1.25000 1.88320 1.18766 0.91480 0.84826 0.95932 1.21062 1.01949 0.88485 1.08648 1.20657 0.89061 0.89872 1.06833 1.98350 1.71171 1.35148 1.96880 1.17393 0.89423 0.81162 1.09797 1.91445 1.83449 1.42738 1.94287 1.19910 0.97102 0.91122 0.95561 1.17999 0.86961 0.90510 0.93554 0.93591 1.59644 1.19136 1.06622 1.51595 1.22567 0.94821 1.55251 0.93452 0.96632 1.27202 0.98636 0.92402 1.02737 1.70916 1.38942 1.44678 1.01500 0.83599 0.74552 0.78020 0.73691 1.20515 1.15831 1.20427 1.20266 0.91816 0.97909 1.03864 0.85581 0.91041 0.91569 0.80576 0.85265 0.85091 0.93567 0.83357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.81 113.37 1.11 1.28 15 2 O -0.32 -8.13 10.50 -93.02 -0.98 -9.10 15 3 C 0.14 4.15 6.69 22.49 0.15 4.30 15 4 C -0.18 -5.08 8.82 22.38 0.20 -4.88 15 5 C -0.04 -1.22 6.32 22.35 0.14 -1.08 15 6 Cl -0.04 -1.30 28.61 -2.72 -0.08 -1.37 15 7 C 0.04 1.77 7.21 22.39 0.16 1.93 15 8 F -0.14 -6.33 16.22 44.97 0.73 -5.60 15 9 C -0.04 -1.49 5.03 -19.84 -0.10 -1.59 15 10 C 0.22 10.32 2.13 43.42 0.09 10.41 15 11 H 0.05 2.23 6.54 -2.39 -0.02 2.21 15 12 N -0.84 -34.34 8.50 -174.94 -1.49 -35.82 15 13 C -0.62 -34.65 8.95 25.60 0.23 -34.42 15 14 H 0.02 0.97 7.99 -2.91 -0.02 0.95 15 15 C -0.01 -0.53 5.44 84.65 0.46 -0.07 15 16 N -0.93 -56.66 13.70 21.45 0.29 -56.37 15 17 Si 1.08 48.12 26.56 68.60 1.82 49.94 15 18 H -0.28 -12.33 7.11 99.48 0.71 -11.63 15 19 H -0.23 -9.05 5.46 99.48 0.54 -8.51 15 20 H -0.28 -12.21 7.11 99.48 0.71 -11.50 15 21 C -0.12 -4.38 9.21 22.36 0.21 -4.18 15 22 H 0.13 1.20 8.14 -2.38 -0.02 1.18 15 23 H 0.07 0.85 7.66 -2.39 -0.02 0.83 15 24 H 0.07 0.85 7.66 -2.39 -0.02 0.83 15 25 H 0.18 3.48 6.30 -2.91 -0.02 3.46 15 26 H 0.34 13.27 7.59 -89.69 -0.68 12.59 15 27 H 0.33 13.33 5.76 -89.69 -0.52 12.81 15 28 H 0.26 15.95 8.73 -92.71 -0.81 15.14 15 29 H 0.15 5.25 6.41 -2.91 -0.02 5.23 15 Total: -1.00 -65.80 266.12 2.77 -63.03 By element: Atomic # 1 Polarization: 23.78 SS G_CDS: -0.18 Total: 23.60 kcal Atomic # 6 Polarization: -30.95 SS G_CDS: 2.65 Total: -28.30 kcal Atomic # 7 Polarization: -91.00 SS G_CDS: -1.19 Total: -92.19 kcal Atomic # 8 Polarization: -8.13 SS G_CDS: -0.98 Total: -9.10 kcal Atomic # 9 Polarization: -6.33 SS G_CDS: 0.73 Total: -5.60 kcal Atomic # 14 Polarization: 48.12 SS G_CDS: 1.82 Total: 49.94 kcal Atomic # 17 Polarization: -1.30 SS G_CDS: -0.08 Total: -1.37 kcal Total: -65.80 2.77 -63.03 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260476365.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.687 kcal (2) G-P(sol) polarization free energy of solvation -65.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds