Wall clock time and date at job start Mon Mar 30 2020 06:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00304 * 2 1 4 4 H 1.48495 * 109.47536 * 240.00585 * 3 2 1 5 5 H 1.48503 * 109.47101 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47049 * 120.00489 * 3 2 1 7 7 C 1.37878 * 119.99792 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99733 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00092 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47447 * 180.02562 * 9 7 2 11 11 H 1.09003 * 109.46918 * 305.00826 * 10 9 7 12 12 N 1.46905 * 109.46909 * 64.99971 * 10 9 7 13 13 C 1.50695 * 109.47292 * 185.00140 * 10 9 7 14 14 C 1.38717 * 120.03265 * 105.27972 * 13 10 9 15 15 O 1.35922 * 120.03226 * 0.02562 * 14 13 10 16 16 C 1.38709 * 119.93699 * 180.30144 * 14 13 10 17 17 C 1.38181 * 120.00464 * 359.67448 * 16 14 13 18 18 C 1.38293 * 120.07023 * 0.04532 * 17 16 14 19 19 Cl 1.73596 * 119.97355 * 179.97438 * 18 17 16 20 20 C 1.38328 * 120.03600 * 285.00184 * 13 10 9 21 21 F 1.35104 * 119.99968 * 359.97438 * 20 13 10 22 22 H 0.97008 * 119.99824 * 359.97438 * 1 2 3 23 23 H 1.09005 * 109.46712 * 60.00585 * 9 7 2 24 24 H 1.08998 * 109.47483 * 300.00476 * 9 7 2 25 25 H 1.00895 * 111.00124 * 296.05105 * 12 10 9 26 26 H 1.00901 * 110.99859 * 59.99967 * 12 10 9 27 27 H 0.96698 * 113.99742 * 270.29740 * 15 14 13 28 28 H 1.07998 * 119.99895 * 179.70005 * 16 14 13 29 29 H 1.08001 * 119.97105 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 1 2.9293 -3.5552 -0.8423 12 7 3.0082 -3.6540 1.2548 13 6 1.4956 -4.9636 -0.1244 14 6 1.5009 -5.6562 -1.3263 15 8 2.1825 -5.1617 -2.3933 16 6 0.8053 -6.8508 -1.4400 17 6 0.1134 -7.3535 -0.3546 18 6 0.1128 -6.6662 0.8455 19 17 -0.7578 -7.2997 2.2072 20 6 0.8065 -5.4719 0.9620 21 9 0.8055 -4.8017 2.1351 22 1 -0.4850 0.8401 0.0004 23 1 0.6240 -2.5566 -0.8904 24 1 0.6245 -2.5571 0.8896 25 1 3.5698 -2.8193 1.3310 26 1 2.3959 -3.7517 2.0508 27 1 1.6595 -4.5748 -2.9564 28 1 0.8047 -7.3883 -2.3767 29 1 -0.4277 -8.2839 -0.4436 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260485502.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:28 Heat of formation + Delta-G solvation = -78.332886 kcal Electronic energy + Delta-G solvation = -17266.976855 eV Core-core repulsion = 14130.229166 eV Total energy + Delta-G solvation = -3136.747689 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.052 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.74825 -39.74991 -37.01043 -36.01860 -35.40533 -32.53947 -30.16776 -29.34747 -28.00139 -24.72874 -22.65148 -22.43802 -20.15681 -18.51716 -17.25375 -16.60568 -16.35680 -15.89834 -15.47544 -14.71182 -14.59582 -14.39477 -13.87071 -13.32510 -12.95966 -12.72974 -12.63717 -12.39443 -12.02637 -11.60049 -11.12874 -11.04895 -10.90237 -10.85172 -10.53493 -10.21444 -9.98763 -9.25678 -8.66201 -8.48834 -8.42938 -7.74121 -6.12616 -4.17574 0.99407 1.20124 2.08204 3.26241 3.31328 3.33218 3.40575 4.07615 4.34717 4.43939 4.78723 4.93201 5.18659 5.23017 5.61508 5.66944 5.82313 5.98403 6.01210 6.20235 6.53590 6.60625 6.72004 7.34227 7.52261 7.72291 7.80600 7.99360 8.18316 8.30358 8.88044 9.47873 10.98088 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.026237 B = 0.006267 C = 0.005602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.944712 B = 4466.939375 C = 4996.930813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.526 4.526 8 H 0.058 0.942 9 C 0.001 3.999 10 C 0.127 3.873 11 H 0.092 0.908 12 N -0.847 5.847 13 C -0.099 4.099 14 C 0.142 3.858 15 O -0.488 6.488 16 C -0.146 4.146 17 C -0.084 4.084 18 C -0.084 4.084 19 Cl -0.059 7.059 20 C 0.137 3.863 21 F -0.115 7.115 22 H 0.263 0.737 23 H 0.017 0.983 24 H 0.020 0.980 25 H 0.349 0.651 26 H 0.337 0.663 27 H 0.398 0.602 28 H 0.141 0.859 29 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.709 -13.446 -1.650 13.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.141 4.141 3 Si 0.722 3.278 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.564 4.564 8 H 0.076 0.924 9 C -0.038 4.038 10 C 0.016 3.984 11 H 0.110 0.890 12 N -0.380 5.380 13 C -0.101 4.101 14 C 0.096 3.904 15 O -0.299 6.299 16 C -0.165 4.165 17 C -0.103 4.103 18 C -0.112 4.112 19 Cl -0.030 7.030 20 C 0.116 3.884 21 F -0.093 7.093 22 H 0.072 0.928 23 H 0.035 0.965 24 H 0.038 0.962 25 H 0.162 0.838 26 H 0.152 0.848 27 H 0.255 0.745 28 H 0.159 0.841 29 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -0.128 -14.328 -1.528 14.410 hybrid contribution -0.706 2.191 0.323 2.325 sum -0.834 -12.137 -1.205 12.225 Atomic orbital electron populations 1.69957 1.06134 1.26976 1.49830 1.25007 0.94832 0.99343 0.94912 0.86615 0.79549 0.82865 0.78742 1.20128 1.21273 1.20123 1.21054 0.92901 0.90539 1.51926 0.92408 1.19807 0.94367 0.91765 0.97849 1.20483 0.94969 0.88718 0.94265 0.88974 1.59320 1.28485 1.45975 1.04191 1.20646 0.98639 0.98632 0.92216 1.18022 0.92715 0.92338 0.87344 1.84753 1.40288 1.67224 1.37646 1.21323 0.98337 0.97197 0.99661 1.20644 0.99583 0.99915 0.90109 1.20940 1.02509 0.96244 0.91476 1.98362 1.74939 1.86140 1.43561 1.16986 0.98690 0.90180 0.82539 1.91412 1.94262 1.79029 1.44621 0.92768 0.96500 0.96155 0.83772 0.84783 0.74462 0.84142 0.84015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.02 13.29 55.43 0.74 -25.28 15 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 15 3 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 15 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 15 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 15 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 15 7 C -0.53 -14.10 8.55 -34.44 -0.29 -14.39 15 8 H 0.06 1.49 7.15 -52.48 -0.38 1.12 15 9 C 0.00 0.01 4.55 -27.88 -0.13 -0.11 15 10 C 0.13 2.63 2.80 -68.86 -0.19 2.44 15 11 H 0.09 1.94 7.14 -51.93 -0.37 1.57 15 12 N -0.85 -16.98 9.07 -5.65 -0.05 -17.03 15 13 C -0.10 -1.82 4.96 -104.41 -0.52 -2.33 15 14 C 0.14 2.19 6.68 -39.23 -0.26 1.93 15 15 O -0.49 -6.99 12.34 -19.49 -0.24 -7.23 15 16 C -0.15 -1.84 9.98 -39.43 -0.39 -2.23 15 17 C -0.08 -1.04 9.82 -39.58 -0.39 -1.43 15 18 C -0.08 -1.27 6.33 -39.42 -0.25 -1.52 15 19 Cl -0.06 -0.82 28.61 -51.86 -1.48 -2.30 15 20 C 0.14 2.45 6.99 -39.41 -0.28 2.17 15 21 F -0.11 -2.21 13.50 2.25 0.03 -2.18 15 22 H 0.26 7.29 8.31 -40.82 -0.34 6.95 15 23 H 0.02 0.44 8.14 -51.93 -0.42 0.02 15 24 H 0.02 0.55 7.74 -51.93 -0.40 0.15 15 25 H 0.35 6.99 7.90 -39.29 -0.31 6.68 15 26 H 0.34 6.78 6.13 -39.29 -0.24 6.54 15 27 H 0.40 4.21 9.06 45.56 0.41 4.62 15 28 H 0.14 1.34 8.06 -52.49 -0.42 0.92 15 29 H 0.14 1.33 8.06 -52.49 -0.42 0.90 15 LS Contribution 271.48 15.07 4.09 4.09 Total: -1.00 -30.21 271.48 -6.43 -36.64 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -1.69 Total: 11.15 kcal Atomic # 6 Polarization: -11.08 SS G_CDS: -2.80 Total: -13.88 kcal Atomic # 7 Polarization: -42.99 SS G_CDS: 0.69 Total: -42.31 kcal Atomic # 8 Polarization: -6.99 SS G_CDS: -0.24 Total: -7.23 kcal Atomic # 9 Polarization: -2.21 SS G_CDS: 0.03 Total: -2.18 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -1.48 Total: -2.30 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -30.21 -6.43 -36.64 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260485502.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.696 kcal (2) G-P(sol) polarization free energy of solvation -30.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds