Wall clock time and date at job start Mon Mar 30 2020 06:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35950 * 116.99802 * 2 1 4 4 C 1.38651 * 120.05953 * 359.72429 * 3 2 1 5 5 C 1.38288 * 119.95778 * 179.72237 * 4 3 2 6 6 Cl 1.73604 * 119.96295 * 180.29690 * 5 4 3 7 7 C 1.38373 * 120.07121 * 0.58055 * 5 4 3 8 8 C 1.38250 * 120.10606 * 359.69381 * 7 5 4 9 9 C 1.50706 * 119.97400 * 180.02562 * 8 7 5 10 10 H 1.09005 * 109.47035 * 144.98051 * 9 8 7 11 11 N 1.46898 * 109.47152 * 24.98247 * 9 8 7 12 12 C 1.50702 * 109.46868 * 264.98118 * 9 8 7 13 13 H 1.07993 * 120.00088 * 0.02562 * 12 9 8 14 14 C 1.37881 * 119.99733 * 180.02562 * 12 9 8 15 15 N 1.31520 * 119.99753 * 0.02562 * 14 12 9 16 16 Si 1.86800 * 119.99936 * 180.02562 * 14 12 9 17 17 H 1.48494 * 109.47254 * 59.99632 * 16 14 12 18 18 H 1.48504 * 109.47075 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47007 * 299.99635 * 16 14 12 20 20 C 1.38324 * 120.04738 * 0.02562 * 8 7 5 21 21 F 1.35098 * 120.03513 * 180.02562 * 20 8 7 22 22 H 1.09001 * 109.47103 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47054 * 299.99740 * 1 2 3 24 24 H 1.09000 * 109.47187 * 59.99795 * 1 2 3 25 25 H 1.08001 * 120.01792 * 0.02562 * 4 3 2 26 26 H 1.07996 * 119.94622 * 179.72380 * 7 5 4 27 27 H 1.00907 * 111.00020 * 299.99933 * 11 9 8 28 28 H 1.00901 * 111.00214 * 63.95402 * 11 9 8 29 29 H 0.96996 * 119.99492 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2922 2.3749 -0.0058 5 6 1.9222 3.6060 0.0000 6 17 0.9782 5.0630 0.0006 7 6 3.3040 3.6778 -0.0005 8 6 4.0586 2.5193 -0.0005 9 6 5.5635 2.6010 -0.0005 10 1 5.9719 1.7803 0.5893 11 7 5.9844 3.8811 0.5844 12 6 6.0717 2.5040 -1.4159 13 1 5.3748 2.3947 -2.2336 14 6 7.4265 2.5549 -1.6669 15 7 8.2752 2.6876 -0.6709 16 14 8.0565 2.4355 -3.4214 17 1 7.5007 3.5542 -4.2242 18 1 9.5395 2.5146 -3.4213 19 1 7.6304 1.1420 -4.0133 20 6 3.4334 1.2855 -0.0005 21 9 4.1710 0.1536 0.0001 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 0.2137 2.3198 -0.0099 26 1 3.7939 4.6402 -0.0005 27 1 5.6182 4.6583 0.0552 28 1 5.7112 3.9430 1.5537 29 1 9.2283 2.7237 -0.8476 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260504296.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:08 Heat of formation + Delta-G solvation = -79.981213 kcal Electronic energy + Delta-G solvation = -17190.738524 eV Core-core repulsion = 14053.919358 eV Total energy + Delta-G solvation = -3136.819166 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.052 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.75430 -41.13684 -39.12300 -37.63249 -36.01306 -33.65715 -31.34532 -30.64424 -28.57242 -27.79263 -24.83932 -23.59497 -21.93478 -19.20887 -18.65335 -18.18340 -18.01914 -17.14099 -16.65087 -16.48206 -16.03253 -15.87103 -15.62762 -15.08290 -14.50907 -14.19696 -14.14005 -13.91424 -13.24080 -12.87295 -12.72730 -12.67224 -12.56050 -12.34812 -12.10885 -11.89583 -11.69864 -11.23640 -10.57252 -9.71351 -9.26571 -9.02875 -8.01053 -6.23196 -0.09047 0.12751 0.95643 1.43891 1.45284 1.52471 2.12153 2.33686 2.50094 3.22526 3.24519 3.67751 3.91479 3.94189 4.28862 4.33130 4.38070 4.46074 4.54763 4.71647 4.80439 4.99431 5.05456 5.42985 5.47678 5.71433 6.09005 6.20220 6.58212 7.02947 7.20110 7.48753 9.02623 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.020287 B = 0.007198 C = 0.006033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.854964 B = 3889.167493 C = 4639.986371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.328 6.328 3 C 0.110 3.890 4 C -0.182 4.182 5 C 0.001 3.999 6 Cl -0.046 7.046 7 C -0.130 4.130 8 C -0.078 4.078 9 C 0.265 3.735 10 H 0.016 0.984 11 N -0.815 5.815 12 C -0.545 4.545 13 H 0.044 0.956 14 C 0.039 3.961 15 N -0.876 5.876 16 Si 0.949 3.051 17 H -0.269 1.269 18 H -0.282 1.282 19 H -0.277 1.277 20 C 0.041 3.959 21 F -0.145 7.145 22 H 0.124 0.876 23 H 0.074 0.926 24 H 0.071 0.929 25 H 0.178 0.822 26 H 0.145 0.855 27 H 0.329 0.671 28 H 0.316 0.684 29 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.778 0.840 2.024 17.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.242 6.242 3 C 0.063 3.937 4 C -0.201 4.201 5 C -0.026 4.026 6 Cl -0.017 7.017 7 C -0.149 4.149 8 C -0.082 4.082 9 C 0.154 3.846 10 H 0.034 0.966 11 N -0.343 5.343 12 C -0.584 4.584 13 H 0.063 0.937 14 C -0.166 4.166 15 N -0.511 5.511 16 Si 0.774 3.226 17 H -0.194 1.194 18 H -0.207 1.207 19 H -0.203 1.203 20 C 0.020 3.980 21 F -0.123 7.123 22 H 0.142 0.858 23 H 0.093 0.907 24 H 0.090 0.910 25 H 0.195 0.805 26 H 0.163 0.837 27 H 0.143 0.857 28 H 0.128 0.872 29 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -16.801 0.518 1.935 16.920 hybrid contribution -0.406 -0.045 -0.667 0.783 sum -17.207 0.474 1.267 17.260 Atomic orbital electron populations 1.23529 0.75324 1.06263 1.02980 1.86154 1.24495 1.24993 1.88528 1.18796 0.89654 0.86367 0.98922 1.21028 1.01716 0.88555 1.08813 1.20599 0.91203 0.88173 1.02603 1.98359 1.71717 1.34872 1.96733 1.20702 0.91647 0.98574 1.04020 1.21435 1.00695 0.90835 0.95190 1.17759 0.81969 0.89748 0.95119 0.96638 1.58911 1.67662 1.03559 1.04161 1.20944 0.91999 1.54030 0.91396 0.93730 1.25639 0.97030 0.93703 1.00182 1.70207 1.01946 1.46888 1.32096 0.85786 0.77191 0.78633 0.80944 1.19400 1.20726 1.20251 1.17286 0.86764 0.82878 1.11073 1.91427 1.77281 1.49280 1.94353 0.85760 0.90729 0.91022 0.80470 0.83731 0.85716 0.87175 0.93333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 9.81 113.37 1.11 1.32 15 2 O -0.33 -9.73 10.36 -92.99 -0.96 -10.69 15 3 C 0.11 3.64 6.69 22.53 0.15 3.80 15 4 C -0.18 -4.88 8.82 22.38 0.20 -4.68 15 5 C 0.00 0.04 6.32 22.31 0.14 0.18 15 6 Cl -0.05 -1.07 28.95 -2.72 -0.08 -1.15 15 7 C -0.13 -4.54 9.05 22.30 0.20 -4.34 15 8 C -0.08 -3.30 4.99 -19.84 -0.10 -3.40 15 9 C 0.26 13.42 2.62 43.43 0.11 13.53 15 10 H 0.02 0.92 7.79 -2.38 -0.02 0.90 15 11 N -0.81 -37.51 8.13 -174.94 -1.42 -38.93 15 12 C -0.55 -30.53 8.71 25.60 0.22 -30.30 15 13 H 0.04 2.51 7.74 -2.91 -0.02 2.49 15 14 C 0.04 2.19 5.39 84.65 0.46 2.64 15 15 N -0.88 -51.63 12.77 21.45 0.27 -51.36 15 16 Si 0.95 44.35 29.54 68.60 2.03 46.38 15 17 H -0.27 -12.13 7.11 99.48 0.71 -11.42 15 18 H -0.28 -12.85 7.11 99.48 0.71 -12.14 15 19 H -0.28 -12.84 7.11 99.48 0.71 -12.13 15 20 C 0.04 1.70 7.25 22.45 0.16 1.86 15 21 F -0.14 -6.86 16.41 44.97 0.74 -6.12 15 22 H 0.12 1.45 8.14 -2.39 -0.02 1.43 15 23 H 0.07 0.96 7.67 -2.38 -0.02 0.95 15 24 H 0.07 0.98 7.65 -2.39 -0.02 0.96 15 25 H 0.18 3.31 6.30 -2.91 -0.02 3.29 15 26 H 0.15 4.78 6.28 -2.91 -0.02 4.76 15 27 H 0.33 13.99 7.20 -89.69 -0.65 13.34 15 28 H 0.32 12.83 9.06 -89.69 -0.81 12.02 15 29 H 0.26 14.50 8.31 -92.71 -0.77 13.73 15 Total: -1.00 -66.09 273.28 2.99 -63.10 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: -0.24 Total: 18.17 kcal Atomic # 6 Polarization: -22.05 SS G_CDS: 2.66 Total: -19.39 kcal Atomic # 7 Polarization: -89.14 SS G_CDS: -1.15 Total: -90.29 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: -0.96 Total: -10.69 kcal Atomic # 9 Polarization: -6.86 SS G_CDS: 0.74 Total: -6.12 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -0.08 Total: -1.15 kcal Total: -66.09 2.99 -63.10 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260504296.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.886 kcal (2) G-P(sol) polarization free energy of solvation -66.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds