Wall clock time and date at job start Mon Mar 30 2020 06:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 119.99763 * 2 1 4 4 H 1.48498 * 109.47225 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47559 * 300.00080 * 3 2 1 6 6 H 1.48505 * 109.47115 * 60.00256 * 3 2 1 7 7 C 1.37871 * 119.99699 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99602 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00667 * 359.97438 * 7 2 1 10 10 H 1.08992 * 109.47201 * 300.00550 * 9 7 2 11 11 C 1.53006 * 109.46610 * 60.00191 * 9 7 2 12 12 N 1.46902 * 109.46626 * 184.99960 * 11 9 7 13 13 C 1.50703 * 109.47407 * 180.02562 * 9 7 2 14 14 C 1.38705 * 120.03233 * 119.72988 * 13 9 7 15 15 O 1.35916 * 120.03087 * 359.97438 * 14 13 9 16 16 C 1.38718 * 119.93998 * 179.72618 * 14 13 9 17 17 C 1.38191 * 119.99889 * 0.54615 * 16 14 13 18 18 C 1.38295 * 120.06797 * 359.73020 * 17 16 14 19 19 Cl 1.73599 * 119.96580 * 180.02562 * 18 17 16 20 20 C 1.38324 * 120.03432 * 300.00402 * 13 9 7 21 21 F 1.35105 * 120.00178 * 0.02562 * 20 13 9 22 22 H 0.96999 * 120.00336 * 0.02562 * 1 2 3 23 23 H 1.08993 * 109.46955 * 305.00306 * 11 9 7 24 24 H 1.09000 * 109.47050 * 65.00135 * 11 9 7 25 25 H 1.00900 * 110.99481 * 180.02562 * 12 11 9 26 26 H 1.00904 * 111.00423 * 303.95194 * 12 11 9 27 27 H 0.96698 * 114.00234 * 90.00540 * 15 14 13 28 28 H 1.07989 * 119.99724 * 180.25196 * 16 14 13 29 29 H 1.07993 * 119.96364 * 179.70576 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2126 7 6 2.0044 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6247 -2.5571 0.8896 11 6 0.3710 -2.5799 -1.2496 12 7 -0.4522 -3.7952 -1.1907 13 6 2.2304 -3.6446 -0.0005 14 6 2.2289 -4.5592 1.0422 15 8 1.3445 -4.4230 2.0653 16 6 3.1273 -5.6161 1.0375 17 6 4.0304 -5.7506 0.0001 18 6 4.0358 -4.8355 -1.0368 19 17 5.1710 -5.0074 -2.3390 20 6 3.1354 -3.7817 -1.0376 21 9 3.1421 -2.8882 -2.0509 22 1 -0.4850 0.8400 -0.0004 23 1 -0.2764 -1.7042 -1.2950 24 1 1.0024 -2.6114 -2.1375 25 1 -1.0426 -3.8717 -2.0054 26 1 0.1233 -4.6170 -1.0831 27 1 0.5052 -4.8819 1.9235 28 1 3.1243 -6.3310 1.8468 29 1 4.7328 -6.5709 -0.0007 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260504412.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:33 Heat of formation + Delta-G solvation = -73.245403 kcal Electronic energy + Delta-G solvation = -17697.213995 eV Core-core repulsion = 14560.686916 eV Total energy + Delta-G solvation = -3136.527079 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.052 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.24581 -39.46524 -36.78153 -35.74884 -35.13039 -32.23694 -30.87550 -29.17713 -27.46161 -24.01787 -22.65494 -22.18919 -19.87818 -18.19599 -16.97839 -16.50619 -15.88775 -15.60489 -15.12490 -14.83477 -14.39802 -14.24137 -13.53266 -13.34533 -12.99111 -12.58681 -12.44031 -11.99770 -11.84528 -11.08987 -11.00734 -10.87887 -10.72941 -10.59430 -10.42287 -10.29912 -9.56400 -9.32753 -8.49347 -8.20382 -8.10516 -7.69863 -6.06174 -4.13240 1.25496 1.50268 2.27578 3.28571 3.36466 3.41827 3.70863 4.37548 4.41488 4.73751 5.07138 5.20553 5.32654 5.54574 5.63218 5.95456 6.13879 6.26961 6.33858 6.55204 6.74387 6.86338 7.06658 7.52168 7.73958 7.83950 8.03982 8.10783 8.24639 8.31258 8.88001 9.51051 10.99044 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.019761 B = 0.008677 C = 0.007415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.575802 B = 3226.047192 C = 3775.433222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.065 3.935 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.507 4.507 8 H 0.057 0.943 9 C 0.087 3.913 10 H 0.063 0.937 11 C 0.058 3.942 12 N -0.852 5.852 13 C -0.088 4.088 14 C 0.134 3.866 15 O -0.483 6.483 16 C -0.152 4.152 17 C -0.094 4.094 18 C -0.090 4.090 19 Cl -0.069 7.069 20 C 0.129 3.871 21 F -0.112 7.112 22 H 0.262 0.738 23 H 0.111 0.889 24 H 0.008 0.992 25 H 0.323 0.677 26 H 0.315 0.685 27 H 0.391 0.609 28 H 0.135 0.865 29 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.231 -11.657 -1.363 12.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.136 4.136 3 Si 0.722 3.278 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.546 4.546 8 H 0.075 0.925 9 C 0.068 3.932 10 H 0.081 0.919 11 C -0.072 4.072 12 N -0.378 5.378 13 C -0.089 4.089 14 C 0.088 3.912 15 O -0.293 6.293 16 C -0.171 4.171 17 C -0.113 4.113 18 C -0.118 4.118 19 Cl -0.040 7.040 20 C 0.109 3.891 21 F -0.090 7.090 22 H 0.072 0.928 23 H 0.129 0.871 24 H 0.027 0.973 25 H 0.134 0.866 26 H 0.125 0.875 27 H 0.247 0.753 28 H 0.153 0.847 29 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 4.308 -10.817 -0.603 11.659 hybrid contribution 0.801 0.495 -1.372 1.664 sum 5.109 -10.322 -1.975 11.685 Atomic orbital electron populations 1.69877 1.05737 1.26599 1.50020 1.24915 0.94916 0.99085 0.94729 0.86486 0.80238 0.83456 0.77634 1.19704 1.20892 1.20863 1.20984 0.92825 0.89414 1.51370 0.92517 1.17868 0.90454 0.88339 0.96496 0.91937 1.22239 0.95890 0.92408 0.96658 1.59032 1.27068 1.05423 1.46302 1.21169 0.97883 0.98879 0.91013 1.18132 0.92688 0.92811 0.87520 1.84825 1.28535 1.76698 1.39199 1.21310 0.97799 0.98801 0.99197 1.20531 0.99741 0.98565 0.92456 1.21011 0.96952 0.99598 0.94206 1.98340 1.59782 1.97435 1.48468 1.17131 0.96168 0.87927 0.87907 1.91540 1.95201 1.65640 1.56646 0.92815 0.87089 0.97332 0.86620 0.87533 0.75260 0.84697 0.84571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.77 11.29 55.43 0.63 -24.15 15 2 C 0.07 1.80 5.29 -17.82 -0.09 1.70 15 3 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 15 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 15 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 7 C -0.51 -13.85 7.59 -34.44 -0.26 -14.11 15 8 H 0.06 1.59 7.60 -52.48 -0.40 1.19 15 9 C 0.09 2.11 2.03 -92.92 -0.19 1.92 15 10 H 0.06 1.66 6.99 -51.93 -0.36 1.30 15 11 C 0.06 1.33 5.95 -3.82 -0.02 1.31 15 12 N -0.85 -16.10 9.62 -10.37 -0.10 -16.20 15 13 C -0.09 -1.81 3.78 -104.42 -0.40 -2.21 15 14 C 0.13 2.36 6.68 -39.23 -0.26 2.10 15 15 O -0.48 -8.21 12.27 -19.48 -0.24 -8.44 15 16 C -0.15 -2.18 9.99 -39.42 -0.39 -2.58 15 17 C -0.09 -1.33 9.82 -39.58 -0.39 -1.72 15 18 C -0.09 -1.51 6.33 -39.42 -0.25 -1.76 15 19 Cl -0.07 -1.05 28.61 -51.86 -1.48 -2.54 15 20 C 0.13 2.59 6.64 -39.41 -0.26 2.32 15 21 F -0.11 -2.48 13.93 2.25 0.03 -2.45 15 22 H 0.26 7.00 8.31 -40.82 -0.34 6.66 15 23 H 0.11 2.93 5.95 -51.93 -0.31 2.62 15 24 H 0.01 0.20 6.19 -51.93 -0.32 -0.12 15 25 H 0.32 5.43 9.08 -39.29 -0.36 5.07 15 26 H 0.31 5.43 8.07 -39.29 -0.32 5.12 15 27 H 0.39 4.93 9.06 45.56 0.41 5.34 15 28 H 0.14 1.53 8.06 -52.49 -0.42 1.11 15 29 H 0.14 1.50 8.06 -52.49 -0.42 1.08 15 LS Contribution 268.04 15.07 4.04 4.04 Total: -1.00 -29.42 268.04 -6.30 -35.72 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -1.63 Total: 10.59 kcal Atomic # 6 Polarization: -10.50 SS G_CDS: -2.52 Total: -13.02 kcal Atomic # 7 Polarization: -40.87 SS G_CDS: 0.53 Total: -40.34 kcal Atomic # 8 Polarization: -8.21 SS G_CDS: -0.24 Total: -8.44 kcal Atomic # 9 Polarization: -2.48 SS G_CDS: 0.03 Total: -2.45 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 17 Polarization: -1.05 SS G_CDS: -1.48 Total: -2.54 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -29.42 -6.30 -35.72 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260504412.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.526 kcal (2) G-P(sol) polarization free energy of solvation -29.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds