Wall clock time and date at job start Mon Mar 30 2020 06:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00027 * 2 1 4 4 H 1.48506 * 109.46899 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47238 * 299.99924 * 3 2 1 6 6 H 1.48497 * 109.47060 * 60.00122 * 3 2 1 7 7 C 1.37884 * 120.00037 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99976 * 170.55220 * 7 2 1 9 9 C 1.50698 * 119.99746 * 350.55898 * 7 2 1 10 10 H 1.08998 * 109.47330 * 54.56322 * 9 7 2 11 11 C 1.53001 * 109.47127 * 294.56052 * 9 7 2 12 12 N 1.46897 * 109.46993 * 177.00822 * 11 9 7 13 13 C 1.50703 * 109.46856 * 174.56185 * 9 7 2 14 14 C 1.38717 * 120.03229 * 239.99924 * 13 9 7 15 15 O 1.35923 * 120.02791 * 359.97335 * 14 13 9 16 16 C 1.38706 * 119.93739 * 179.70154 * 14 13 9 17 17 C 1.38186 * 120.00542 * 0.27447 * 16 14 13 18 18 C 1.38287 * 120.06768 * 0.02562 * 17 16 14 19 19 Cl 1.73599 * 119.96986 * 179.97438 * 18 17 16 20 20 C 1.38326 * 120.03534 * 60.25481 * 13 9 7 21 21 F 1.35099 * 120.00269 * 359.97438 * 20 13 9 22 22 H 0.97002 * 120.00027 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.46931 * 297.00679 * 11 9 7 24 24 H 1.08999 * 109.47224 * 57.00721 * 11 9 7 25 25 H 1.00903 * 111.00261 * 184.49282 * 12 11 9 26 26 H 1.00899 * 111.00138 * 308.44882 * 12 11 9 27 27 H 0.96699 * 113.99820 * 269.72490 * 15 14 13 28 28 H 1.08006 * 119.99560 * 180.29902 * 16 14 13 29 29 H 1.07995 * 119.96332 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0735 -1.2005 -0.1530 9 6 1.2663 -2.4902 0.2152 10 1 0.4569 -2.5718 -0.5102 11 6 0.6871 -2.5188 1.6311 12 7 -0.0926 -3.7499 1.8163 13 6 2.2178 -3.6454 0.0382 14 6 1.9782 -4.5984 -0.9409 15 8 0.8848 -4.4914 -1.7412 16 6 2.8586 -5.6575 -1.1061 17 6 3.9700 -5.7658 -0.2921 18 6 4.2057 -4.8192 0.6881 19 17 5.6024 -4.9580 1.7097 20 6 3.3280 -3.7595 0.8554 21 9 3.5602 -2.8346 1.8125 22 1 -0.4850 0.8401 -0.0004 23 1 1.5000 -2.4909 2.3567 24 1 0.0403 -1.6537 1.7766 25 1 -0.5459 -3.7587 2.7178 26 1 -0.7642 -3.8679 1.0727 27 1 0.1001 -4.9396 -1.3970 28 1 2.6756 -6.3974 -1.8714 29 1 4.6552 -6.5904 -0.4217 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260504415.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:36 Heat of formation + Delta-G solvation = -75.949100 kcal Electronic energy + Delta-G solvation = -17667.510552 eV Core-core repulsion = 14530.866232 eV Total energy + Delta-G solvation = -3136.644320 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.052 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.13697 -39.33754 -36.68658 -35.66549 -35.10897 -32.27649 -30.87477 -29.06713 -27.41610 -24.01334 -22.59260 -22.08699 -19.96772 -18.14157 -16.97846 -16.35958 -15.80346 -15.60644 -14.98588 -14.74343 -14.44750 -14.16748 -13.59116 -13.25780 -12.72949 -12.45408 -12.38718 -12.04527 -11.78935 -11.46636 -10.99436 -10.92235 -10.69990 -10.62433 -10.37804 -10.07202 -9.57747 -9.39164 -8.48538 -8.06348 -7.98049 -7.77879 -6.14637 -4.15658 1.39531 1.66884 2.38928 3.26330 3.34712 3.41237 3.84780 4.38705 4.50294 4.84832 5.14774 5.20881 5.42165 5.58149 5.66679 6.06493 6.24803 6.38902 6.44858 6.55510 6.78036 6.87554 7.15612 7.32624 7.69856 7.82075 7.88694 8.09668 8.17137 8.28659 8.85841 9.47520 10.94026 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.019726 B = 0.008720 C = 0.007361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.092447 B = 3210.396653 C = 3802.844718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.067 3.933 3 Si 0.891 3.109 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.282 1.282 7 C -0.508 4.508 8 H 0.059 0.941 9 C 0.085 3.915 10 H 0.058 0.942 11 C 0.062 3.938 12 N -0.858 5.858 13 C -0.062 4.062 14 C 0.129 3.871 15 O -0.485 6.485 16 C -0.151 4.151 17 C -0.098 4.098 18 C -0.087 4.087 19 Cl -0.072 7.072 20 C 0.134 3.866 21 F -0.115 7.115 22 H 0.261 0.739 23 H 0.057 0.943 24 H 0.049 0.951 25 H 0.323 0.677 26 H 0.328 0.672 27 H 0.387 0.613 28 H 0.133 0.867 29 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.968 -10.736 0.897 11.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.135 4.135 3 Si 0.719 3.281 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.208 1.208 7 C -0.546 4.546 8 H 0.077 0.923 9 C 0.066 3.934 10 H 0.076 0.924 11 C -0.068 4.068 12 N -0.385 5.385 13 C -0.063 4.063 14 C 0.084 3.916 15 O -0.294 6.294 16 C -0.170 4.170 17 C -0.116 4.116 18 C -0.115 4.115 19 Cl -0.043 7.043 20 C 0.114 3.886 21 F -0.093 7.093 22 H 0.071 0.929 23 H 0.076 0.924 24 H 0.067 0.933 25 H 0.133 0.867 26 H 0.139 0.861 27 H 0.242 0.758 28 H 0.151 0.849 29 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 4.044 -10.616 0.598 11.376 hybrid contribution -0.545 1.478 0.623 1.694 sum 3.499 -9.138 1.221 9.861 Atomic orbital electron populations 1.69952 1.05939 1.26780 1.49896 1.24909 0.94827 0.99176 0.94563 0.86529 0.80519 0.83445 0.77631 1.19489 1.20966 1.20812 1.20980 0.94139 0.89719 1.49770 0.92309 1.17836 0.93072 0.88823 0.93699 0.92361 1.22096 0.96587 0.89148 0.98991 1.59087 1.31372 1.41927 1.06126 1.20823 0.95446 0.98064 0.91994 1.18058 0.89700 0.92938 0.90888 1.84842 1.20268 1.78169 1.46120 1.21231 0.95953 0.98810 1.00969 1.20471 0.98250 0.98334 0.94583 1.20962 0.92214 0.99273 0.99011 1.98332 1.40532 1.97816 1.67640 1.17017 0.94495 0.87189 0.89924 1.91509 1.93714 1.63646 1.60451 0.92890 0.92431 0.93285 0.86683 0.86131 0.75777 0.84943 0.84751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.61 12.15 55.43 0.67 -23.93 15 2 C 0.07 1.84 5.18 -17.82 -0.09 1.74 15 3 Si 0.89 21.33 29.55 -169.99 -5.02 16.31 15 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 15 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 15 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 7 C -0.51 -13.77 7.59 -34.44 -0.26 -14.03 15 8 H 0.06 1.64 7.45 -52.49 -0.39 1.25 15 9 C 0.08 2.02 1.79 -92.92 -0.17 1.86 15 10 H 0.06 1.50 6.94 -51.93 -0.36 1.14 15 11 C 0.06 1.39 5.91 -3.83 -0.02 1.37 15 12 N -0.86 -15.54 9.31 -10.37 -0.10 -15.64 15 13 C -0.06 -1.31 4.44 -104.41 -0.46 -1.77 15 14 C 0.13 2.36 6.68 -39.23 -0.26 2.10 15 15 O -0.48 -8.31 12.27 -19.50 -0.24 -8.54 15 16 C -0.15 -2.30 9.98 -39.43 -0.39 -2.69 15 17 C -0.10 -1.47 9.82 -39.58 -0.39 -1.86 15 18 C -0.09 -1.54 6.33 -39.42 -0.25 -1.79 15 19 Cl -0.07 -1.14 28.61 -51.86 -1.48 -2.63 15 20 C 0.13 2.79 6.61 -39.41 -0.26 2.53 15 21 F -0.12 -2.59 13.84 2.25 0.03 -2.56 15 22 H 0.26 6.93 8.31 -40.82 -0.34 6.59 15 23 H 0.06 1.35 6.21 -51.93 -0.32 1.03 15 24 H 0.05 1.23 6.84 -51.93 -0.36 0.87 15 25 H 0.32 5.19 9.08 -39.29 -0.36 4.83 15 26 H 0.33 5.55 8.93 -39.29 -0.35 5.20 15 27 H 0.39 4.77 9.06 45.56 0.41 5.19 15 28 H 0.13 1.62 8.06 -52.48 -0.42 1.19 15 29 H 0.13 1.60 8.06 -52.49 -0.42 1.18 15 LS Contribution 270.33 15.07 4.07 4.07 Total: -1.00 -29.35 270.33 -6.33 -35.68 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -1.70 Total: 9.78 kcal Atomic # 6 Polarization: -9.99 SS G_CDS: -2.56 Total: -12.55 kcal Atomic # 7 Polarization: -40.15 SS G_CDS: 0.58 Total: -39.57 kcal Atomic # 8 Polarization: -8.31 SS G_CDS: -0.24 Total: -8.54 kcal Atomic # 9 Polarization: -2.59 SS G_CDS: 0.03 Total: -2.56 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -1.48 Total: -2.63 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -29.35 -6.33 -35.68 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260504415.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.270 kcal (2) G-P(sol) polarization free energy of solvation -29.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds