Wall clock time and date at job start Mon Mar 30 2020 06:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00027 * 2 1 4 4 H 1.48506 * 109.46899 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47238 * 299.99924 * 3 2 1 6 6 H 1.48497 * 109.47060 * 60.00122 * 3 2 1 7 7 C 1.37884 * 120.00037 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99976 * 170.55220 * 7 2 1 9 9 C 1.50698 * 119.99746 * 350.55898 * 7 2 1 10 10 H 1.08998 * 109.47330 * 54.56322 * 9 7 2 11 11 C 1.53001 * 109.47127 * 294.56052 * 9 7 2 12 12 N 1.46897 * 109.46993 * 177.00822 * 11 9 7 13 13 C 1.50703 * 109.46856 * 174.56185 * 9 7 2 14 14 C 1.38717 * 120.03229 * 239.99924 * 13 9 7 15 15 O 1.35923 * 120.02791 * 359.97335 * 14 13 9 16 16 C 1.38706 * 119.93739 * 179.70154 * 14 13 9 17 17 C 1.38186 * 120.00542 * 0.27447 * 16 14 13 18 18 C 1.38287 * 120.06768 * 0.02562 * 17 16 14 19 19 Cl 1.73599 * 119.96986 * 179.97438 * 18 17 16 20 20 C 1.38326 * 120.03534 * 60.25481 * 13 9 7 21 21 F 1.35099 * 120.00269 * 359.97438 * 20 13 9 22 22 H 0.97002 * 120.00027 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.46931 * 297.00679 * 11 9 7 24 24 H 1.08999 * 109.47224 * 57.00721 * 11 9 7 25 25 H 1.00903 * 111.00261 * 184.49282 * 12 11 9 26 26 H 1.00899 * 111.00138 * 308.44882 * 12 11 9 27 27 H 0.96699 * 113.99820 * 269.72490 * 15 14 13 28 28 H 1.08006 * 119.99560 * 180.29902 * 16 14 13 29 29 H 1.07995 * 119.96332 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0735 -1.2005 -0.1530 9 6 1.2663 -2.4902 0.2152 10 1 0.4569 -2.5718 -0.5102 11 6 0.6871 -2.5188 1.6311 12 7 -0.0926 -3.7499 1.8163 13 6 2.2178 -3.6454 0.0382 14 6 1.9782 -4.5984 -0.9409 15 8 0.8848 -4.4914 -1.7412 16 6 2.8586 -5.6575 -1.1061 17 6 3.9700 -5.7658 -0.2921 18 6 4.2057 -4.8192 0.6881 19 17 5.6024 -4.9580 1.7097 20 6 3.3280 -3.7595 0.8554 21 9 3.5602 -2.8346 1.8125 22 1 -0.4850 0.8401 -0.0004 23 1 1.5000 -2.4909 2.3567 24 1 0.0403 -1.6537 1.7766 25 1 -0.5459 -3.7587 2.7178 26 1 -0.7642 -3.8679 1.0727 27 1 0.1001 -4.9396 -1.3970 28 1 2.6756 -6.3974 -1.8714 29 1 4.6552 -6.5904 -0.4217 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260504415.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:36 Heat of formation + Delta-G solvation = -97.587845 kcal Electronic energy + Delta-G solvation = -17668.448879 eV Core-core repulsion = 14530.866232 eV Total energy + Delta-G solvation = -3137.582647 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.052 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.73266 -40.72405 -37.99831 -37.16718 -36.65666 -34.21009 -32.42596 -30.42777 -29.11283 -25.94188 -24.10676 -23.47736 -21.66051 -19.51885 -18.82346 -17.79320 -17.38868 -17.08106 -16.62004 -16.54798 -16.04542 -15.54765 -15.30131 -14.66278 -14.36820 -14.07637 -13.80974 -13.73419 -13.31088 -13.13835 -12.89251 -12.60849 -12.16701 -12.13631 -11.95649 -11.78209 -11.37018 -11.15016 -10.53468 -9.51001 -9.42604 -9.36510 -8.21151 -6.27590 0.03697 0.30268 1.07146 1.34190 1.37587 1.48929 2.36604 2.53010 3.09120 3.16683 3.51022 3.87926 4.02658 4.11015 4.31201 4.72055 4.74401 4.91577 4.95731 5.10902 5.13100 5.36122 5.42419 5.71437 5.79437 5.86604 6.14086 6.42153 6.67645 6.85723 6.91868 7.37529 8.86176 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.019726 B = 0.008720 C = 0.007361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.092447 B = 3210.396653 C = 3802.844718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.025 3.975 3 Si 0.943 3.057 4 H -0.274 1.274 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.523 4.523 8 H 0.040 0.960 9 C 0.092 3.908 10 H 0.035 0.965 11 C 0.079 3.921 12 N -0.843 5.843 13 C -0.094 4.094 14 C 0.125 3.875 15 O -0.496 6.496 16 C -0.134 4.134 17 C -0.079 4.079 18 C -0.093 4.093 19 Cl -0.059 7.059 20 C 0.103 3.897 21 F -0.137 7.137 22 H 0.263 0.737 23 H 0.042 0.958 24 H 0.016 0.984 25 H 0.338 0.662 26 H 0.337 0.663 27 H 0.406 0.594 28 H 0.174 0.826 29 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.719 -12.701 0.211 13.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.175 4.175 3 Si 0.769 3.231 4 H -0.199 1.199 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.059 0.941 9 C 0.073 3.927 10 H 0.053 0.947 11 C -0.052 4.052 12 N -0.372 5.372 13 C -0.096 4.096 14 C 0.080 3.920 15 O -0.309 6.309 16 C -0.152 4.152 17 C -0.098 4.098 18 C -0.121 4.121 19 Cl -0.030 7.030 20 C 0.083 3.917 21 F -0.115 7.115 22 H 0.072 0.928 23 H 0.061 0.939 24 H 0.035 0.965 25 H 0.149 0.851 26 H 0.149 0.851 27 H 0.265 0.735 28 H 0.191 0.809 29 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 4.774 -12.600 -0.079 13.474 hybrid contribution -0.766 1.976 0.810 2.269 sum 4.008 -10.623 0.732 11.378 Atomic orbital electron populations 1.70027 1.06792 1.27373 1.50634 1.25550 0.95603 1.01831 0.94529 0.85729 0.79134 0.80323 0.77937 1.19861 1.20215 1.20195 1.21229 0.93531 0.91806 1.49617 0.94126 1.17535 0.92807 0.89012 0.93371 0.94725 1.21692 0.95891 0.89514 0.98066 1.58927 1.31680 1.39196 1.07355 1.20670 0.95899 0.98616 0.94422 1.18262 0.90614 0.93128 0.90029 1.84784 1.21078 1.78914 1.46109 1.21615 0.94503 0.98040 1.01044 1.20993 0.98220 0.98048 0.92500 1.21123 0.92201 0.98900 0.99846 1.98334 1.39536 1.97702 1.67453 1.17322 0.95813 0.88244 0.90316 1.91441 1.93967 1.64746 1.61366 0.92797 0.93917 0.96530 0.85067 0.85088 0.73523 0.80855 0.80618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.62 12.15 21.45 0.26 -51.36 15 2 C 0.02 1.38 5.18 84.66 0.44 1.81 15 3 Si 0.94 44.57 29.55 68.60 2.03 46.59 15 4 H -0.27 -12.97 7.11 99.48 0.71 -12.26 15 5 H -0.28 -12.67 7.11 99.48 0.71 -11.96 15 6 H -0.28 -12.71 7.11 99.48 0.71 -12.00 15 7 C -0.52 -29.32 7.59 25.60 0.19 -29.13 15 8 H 0.04 2.36 7.45 -2.91 -0.02 2.34 15 9 C 0.09 4.51 1.79 -12.29 -0.02 4.48 15 10 H 0.03 1.84 6.94 -2.39 -0.02 1.82 15 11 C 0.08 3.68 5.91 86.30 0.51 4.19 15 12 N -0.84 -30.39 9.31 -186.72 -1.74 -32.12 15 13 C -0.09 -4.00 4.44 -19.73 -0.09 -4.09 15 14 C 0.12 4.35 6.68 22.50 0.15 4.50 15 15 O -0.50 -16.26 12.27 -92.69 -1.14 -17.40 15 16 C -0.13 -3.54 9.98 22.37 0.22 -3.31 15 17 C -0.08 -2.07 9.82 22.27 0.22 -1.85 15 18 C -0.09 -3.11 6.33 22.37 0.14 -2.97 15 19 Cl -0.06 -1.77 28.61 -2.72 -0.08 -1.85 15 20 C 0.10 4.28 6.61 22.38 0.15 4.43 15 21 F -0.14 -6.33 13.84 44.97 0.62 -5.71 15 22 H 0.26 14.19 8.31 -92.71 -0.77 13.42 15 23 H 0.04 2.08 6.21 -2.39 -0.01 2.07 15 24 H 0.02 0.86 6.84 -2.39 -0.02 0.84 15 25 H 0.34 10.64 9.08 -89.69 -0.81 9.83 15 26 H 0.34 11.27 8.93 -89.69 -0.80 10.47 15 27 H 0.41 9.34 9.06 -74.06 -0.67 8.67 15 28 H 0.17 3.20 8.06 -2.91 -0.02 3.18 15 29 H 0.18 3.15 8.06 -2.91 -0.02 3.13 15 Total: -1.00 -65.08 270.33 0.82 -64.26 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: -1.05 Total: 19.53 kcal Atomic # 6 Polarization: -23.86 SS G_CDS: 1.92 Total: -21.94 kcal Atomic # 7 Polarization: -82.01 SS G_CDS: -1.48 Total: -83.49 kcal Atomic # 8 Polarization: -16.26 SS G_CDS: -1.14 Total: -17.40 kcal Atomic # 9 Polarization: -6.33 SS G_CDS: 0.62 Total: -5.71 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Atomic # 17 Polarization: -1.77 SS G_CDS: -0.08 Total: -1.85 kcal Total: -65.08 0.82 -64.26 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260504415.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.329 kcal (2) G-P(sol) polarization free energy of solvation -65.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds