Wall clock time and date at job start Mon Mar 30 2020 06:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35920 * 117.00096 * 2 1 4 4 C 1.38734 * 120.05004 * 359.97438 * 3 2 1 5 5 C 1.38153 * 120.00662 * 179.75032 * 4 3 2 6 6 C 1.38245 * 120.09784 * 0.54535 * 5 4 3 7 7 C 1.50703 * 119.95589 * 179.72589 * 6 5 4 8 8 H 1.08994 * 109.47275 * 144.73294 * 7 6 5 9 9 N 1.46898 * 109.46797 * 24.72809 * 7 6 5 10 10 C 1.50700 * 109.47148 * 264.73070 * 7 6 5 11 11 H 1.08002 * 119.99770 * 0.02562 * 10 7 6 12 12 C 1.37871 * 120.00083 * 179.97438 * 10 7 6 13 13 N 1.31514 * 120.00147 * 0.02562 * 12 10 7 14 14 Si 1.86803 * 120.00278 * 180.02562 * 12 10 7 15 15 H 1.48494 * 109.47228 * 179.97438 * 14 12 10 16 16 H 1.48501 * 109.46793 * 300.00001 * 14 12 10 17 17 H 1.48500 * 109.47000 * 60.00094 * 14 12 10 18 18 C 1.38466 * 120.09086 * 359.46040 * 6 5 4 19 19 F 1.35100 * 120.00039 * 180.29480 * 18 6 5 20 20 C 1.38468 * 119.99474 * 0.26344 * 18 6 5 21 21 Cl 1.73604 * 120.04622 * 180.02562 * 20 18 6 22 22 H 1.09005 * 109.46868 * 300.00168 * 1 2 3 23 23 H 1.09003 * 109.47113 * 59.99938 * 1 2 3 24 24 H 1.08999 * 109.47418 * 179.97438 * 1 2 3 25 25 H 1.08007 * 119.99759 * 0.02562 * 4 3 2 26 26 H 1.08006 * 119.94945 * 180.29891 * 5 4 3 27 27 H 1.00892 * 111.00332 * 300.00256 * 9 7 6 28 28 H 1.00905 * 110.99665 * 63.96030 * 9 7 6 29 29 H 0.97005 * 119.99661 * 359.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2916 2.3752 -0.0005 5 6 1.9197 3.6057 0.0047 6 6 3.3002 3.6794 -0.0009 7 6 3.9820 5.0233 -0.0015 8 1 4.8971 4.9668 0.5879 9 7 3.0841 6.0281 0.5834 10 6 4.3198 5.4147 -1.4170 11 1 4.0657 4.7563 -2.2346 12 6 4.9522 6.6137 -1.6686 13 7 5.2611 7.4157 -0.6731 14 14 5.3702 7.0993 -3.4233 15 1 6.0411 8.4240 -3.4239 16 1 6.2781 6.0838 -4.0148 17 1 4.1233 7.1761 -4.2260 18 6 4.0573 2.5200 -0.0005 19 9 5.4062 2.5942 0.0000 20 6 3.4317 1.2847 0.0000 21 17 4.3796 -0.1697 0.0012 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 0.2129 2.3196 -0.0005 26 1 1.3313 4.5114 0.0091 27 1 2.2279 6.0995 0.0544 28 1 2.8942 5.8227 1.5529 29 1 5.0437 7.1638 0.2381 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260514634.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:41 Heat of formation + Delta-G solvation = -83.885256 kcal Electronic energy + Delta-G solvation = -17224.959187 eV Core-core repulsion = 14087.970729 eV Total energy + Delta-G solvation = -3136.988458 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -50.00808 -41.26366 -38.98911 -37.71897 -36.28381 -33.45972 -31.65577 -30.69236 -28.31848 -27.41912 -24.80528 -23.58896 -22.19269 -19.65018 -18.97979 -18.27853 -17.28378 -17.20425 -16.98091 -16.47671 -16.34913 -15.73574 -15.59263 -15.40758 -14.61735 -14.06598 -14.04757 -13.89137 -13.43082 -13.09026 -12.62937 -12.60022 -12.34347 -12.13682 -12.00593 -11.99052 -11.86815 -10.79401 -10.49183 -9.85126 -9.46598 -9.15791 -8.39213 -6.26321 -0.15435 0.10260 0.93622 1.56163 1.63556 1.82626 2.02353 2.34272 2.64759 3.27909 3.31080 3.67235 3.69525 3.95651 4.12224 4.17526 4.37218 4.42159 4.56690 4.75131 4.81047 4.92586 4.99712 5.34613 5.46564 5.89830 6.16905 6.18954 6.62281 6.76854 7.02925 7.64162 8.97082 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.025968 B = 0.006607 C = 0.006012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.994561 B = 4237.019809 C = 4655.963444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.317 6.317 3 C 0.150 3.850 4 C -0.186 4.186 5 C -0.054 4.054 6 C -0.152 4.152 7 C 0.251 3.749 8 H 0.004 0.996 9 N -0.832 5.832 10 C -0.616 4.616 11 H 0.034 0.966 12 C -0.008 4.008 13 N -0.916 5.916 14 Si 1.108 2.892 15 H -0.284 1.284 16 H -0.281 1.281 17 H -0.270 1.270 18 C 0.120 3.880 19 F -0.137 7.137 20 C -0.122 4.122 21 Cl -0.048 7.048 22 H 0.074 0.926 23 H 0.070 0.930 24 H 0.125 0.875 25 H 0.183 0.817 26 H 0.153 0.847 27 H 0.337 0.663 28 H 0.323 0.677 29 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.523 -13.459 2.027 18.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.230 6.230 3 C 0.103 3.897 4 C -0.204 4.204 5 C -0.073 4.073 6 C -0.155 4.155 7 C 0.141 3.859 8 H 0.022 0.978 9 N -0.362 5.362 10 C -0.654 4.654 11 H 0.053 0.947 12 C -0.212 4.212 13 N -0.551 5.551 14 Si 0.931 3.069 15 H -0.210 1.210 16 H -0.207 1.207 17 H -0.195 1.195 18 C 0.100 3.900 19 F -0.116 7.116 20 C -0.150 4.150 21 Cl -0.019 7.019 22 H 0.092 0.908 23 H 0.089 0.911 24 H 0.143 0.857 25 H 0.200 0.800 26 H 0.171 0.829 27 H 0.152 0.848 28 H 0.135 0.865 29 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.048 -12.062 0.988 16.386 hybrid contribution -0.679 -1.962 1.190 2.393 sum -11.726 -14.023 2.178 18.409 Atomic orbital electron populations 1.23528 0.75291 1.06251 1.02994 1.86129 1.24269 1.24644 1.88006 1.18272 0.88824 0.86518 0.96129 1.21529 1.02019 0.89745 1.07114 1.20949 0.91932 0.99128 0.95247 1.21302 0.95688 0.96158 1.02394 1.17808 0.90333 0.82668 0.95070 0.97820 1.59094 1.19893 1.52211 1.05036 1.21892 1.44760 1.07312 0.91435 0.94733 1.26924 0.92943 0.93177 1.08130 1.70672 1.43806 1.38619 1.02037 0.83065 0.77074 0.75878 0.70899 1.20993 1.20741 1.19513 1.17228 0.77247 0.92447 1.03128 1.91467 1.29425 1.97042 1.93617 1.20179 0.90923 0.87002 1.16928 1.98328 1.71816 1.34485 1.97280 0.90776 0.91098 0.85702 0.80035 0.82932 0.84840 0.86513 0.90966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.81 113.37 1.11 1.28 15 2 O -0.32 -7.68 9.95 -92.65 -0.92 -8.60 15 3 C 0.15 4.36 6.68 22.51 0.15 4.51 15 4 C -0.19 -4.69 9.04 22.37 0.20 -4.48 15 5 C -0.05 -1.71 9.26 22.25 0.21 -1.51 15 6 C -0.15 -6.28 4.99 -19.81 -0.10 -6.37 15 7 C 0.25 12.44 2.24 43.42 0.10 12.54 15 8 H 0.00 0.23 7.65 -2.39 -0.02 0.21 15 9 N -0.83 -36.13 7.38 -174.96 -1.29 -37.42 15 10 C -0.62 -34.52 8.71 25.60 0.22 -34.29 15 11 H 0.03 1.97 7.74 -2.91 -0.02 1.95 15 12 C -0.01 -0.44 5.39 84.65 0.46 0.02 15 13 N -0.92 -55.89 13.51 21.45 0.29 -55.60 15 14 Si 1.11 51.01 29.90 68.60 2.05 53.06 15 15 H -0.28 -13.08 7.11 99.48 0.71 -12.38 15 16 H -0.28 -12.49 7.11 99.48 0.71 -11.78 15 17 H -0.27 -11.47 7.11 99.48 0.71 -10.77 15 18 C 0.12 5.04 7.21 22.38 0.16 5.20 15 19 F -0.14 -6.41 16.13 44.97 0.73 -5.68 15 20 C -0.12 -4.35 6.34 22.45 0.14 -4.21 15 21 Cl -0.05 -1.58 28.16 -2.72 -0.08 -1.66 15 22 H 0.07 0.73 7.66 -2.38 -0.02 0.72 15 23 H 0.07 0.76 7.66 -2.39 -0.02 0.74 15 24 H 0.12 1.03 8.14 -2.39 -0.02 1.01 15 25 H 0.18 2.87 6.30 -2.91 -0.02 2.86 15 26 H 0.15 4.21 6.28 -2.91 -0.02 4.19 15 27 H 0.34 13.33 7.20 -89.70 -0.65 12.68 15 28 H 0.32 12.03 9.06 -89.69 -0.81 11.21 15 29 H 0.28 17.13 6.39 -92.70 -0.59 16.53 15 Total: -1.00 -69.41 270.11 3.36 -66.05 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -0.06 Total: 17.18 kcal Atomic # 6 Polarization: -29.97 SS G_CDS: 2.65 Total: -27.32 kcal Atomic # 7 Polarization: -92.02 SS G_CDS: -1.00 Total: -93.02 kcal Atomic # 8 Polarization: -7.68 SS G_CDS: -0.92 Total: -8.60 kcal Atomic # 9 Polarization: -6.41 SS G_CDS: 0.73 Total: -5.68 kcal Atomic # 14 Polarization: 51.01 SS G_CDS: 2.05 Total: 53.06 kcal Atomic # 17 Polarization: -1.58 SS G_CDS: -0.08 Total: -1.66 kcal Total: -69.41 3.36 -66.05 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260514634.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.835 kcal (2) G-P(sol) polarization free energy of solvation -69.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds