Wall clock time and date at job start Mon Mar 30 2020 06:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35917 * 117.00183 * 2 1 4 4 C 1.38737 * 120.04965 * 0.05142 * 3 2 1 5 5 C 1.38153 * 120.00899 * 179.97438 * 4 3 2 6 6 C 1.38255 * 120.09558 * 359.97438 * 5 4 3 7 7 C 1.50704 * 119.94887 * 180.02562 * 6 5 4 8 8 H 1.09005 * 109.46638 * 220.00047 * 7 6 5 9 9 N 1.46895 * 109.47036 * 339.99791 * 7 6 5 10 10 C 1.50696 * 109.47104 * 100.00288 * 7 6 5 11 11 H 1.08007 * 120.00053 * 359.97438 * 10 7 6 12 12 C 1.37880 * 120.00233 * 179.97438 * 10 7 6 13 13 N 1.31506 * 120.00187 * 179.97438 * 12 10 7 14 14 Si 1.86803 * 119.99498 * 359.97438 * 12 10 7 15 15 H 1.48498 * 109.47021 * 90.00487 * 14 12 10 16 16 H 1.48503 * 109.46789 * 210.00374 * 14 12 10 17 17 H 1.48493 * 109.47272 * 330.00257 * 14 12 10 18 18 C 1.38455 * 120.09331 * 359.97438 * 6 5 4 19 19 F 1.35102 * 120.00121 * 179.97438 * 18 6 5 20 20 C 1.38465 * 119.99896 * 0.02562 * 18 6 5 21 21 Cl 1.73597 * 120.05311 * 180.02562 * 20 18 6 22 22 H 1.08999 * 109.46787 * 59.99267 * 1 2 3 23 23 H 1.08995 * 109.46930 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47010 * 300.00020 * 1 2 3 25 25 H 1.08004 * 119.99147 * 359.97438 * 4 3 2 26 26 H 1.08000 * 119.95243 * 180.27276 * 5 4 3 27 27 H 1.00897 * 111.00323 * 60.00474 * 9 7 6 28 28 H 1.00907 * 110.99907 * 183.95309 * 9 7 6 29 29 H 0.96998 * 120.00358 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2915 2.3752 0.0011 5 6 1.9197 3.6057 0.0016 6 6 3.3002 3.6794 0.0016 7 6 3.9820 5.0234 0.0028 8 1 4.8484 4.9918 -0.6579 9 7 3.0428 6.0492 -0.4700 10 6 4.4294 5.3585 1.4022 11 1 4.2387 4.6675 2.2102 12 6 5.0821 6.5472 1.6513 13 7 5.4721 6.8398 2.8727 14 14 5.4125 7.7419 0.2538 15 1 4.2706 8.6827 0.1266 16 1 6.6538 8.5056 0.5386 17 1 5.5757 6.9871 -1.0145 18 6 4.0573 2.5201 0.0016 19 9 5.4063 2.5942 0.0011 20 6 3.4318 1.2848 0.0011 21 17 4.3796 -0.1696 0.0017 22 1 -0.3633 0.5140 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 0.2129 2.3195 0.0015 26 1 1.3314 4.5114 0.0069 27 1 2.2304 6.0981 0.1264 28 1 3.4948 6.9487 -0.5397 29 1 5.9316 7.6759 3.0479 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260514637.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:44 Heat of formation + Delta-G solvation = -53.986374 kcal Electronic energy + Delta-G solvation = -17235.806962 eV Core-core repulsion = 14100.115017 eV Total energy + Delta-G solvation = -3135.691945 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.052 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.32722 -39.94885 -37.56436 -36.27589 -34.64140 -31.94161 -30.27994 -29.48286 -27.29957 -26.14751 -23.16714 -22.25287 -20.28550 -18.35193 -17.23498 -16.85246 -15.87573 -15.82466 -15.79003 -15.04972 -14.89107 -14.39066 -14.24516 -13.36954 -12.82924 -12.69124 -12.63998 -12.60460 -11.95645 -11.84851 -11.39001 -11.14858 -10.95253 -10.85916 -10.66086 -10.37953 -10.19305 -9.62872 -8.83235 -8.36834 -8.01298 -7.51868 -6.27575 -4.32267 1.33466 1.57132 2.37026 3.08792 3.17267 3.25063 3.25293 3.83776 4.18909 4.72910 4.92520 4.93498 5.07058 5.09990 5.21181 5.35213 5.45465 5.56819 5.71034 6.10357 6.19898 6.46311 6.63644 6.83946 7.07739 7.33476 7.37747 7.93547 8.14765 8.37953 8.77933 9.30102 10.84935 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.029180 B = 0.006784 C = 0.006002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.337415 B = 4126.145265 C = 4664.270917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.307 6.307 3 C 0.139 3.861 4 C -0.210 4.210 5 C -0.041 4.041 6 C -0.081 4.081 7 C 0.213 3.787 8 H 0.058 0.942 9 N -0.848 5.848 10 C -0.546 4.546 11 H 0.077 0.923 12 C 0.076 3.924 13 N -0.886 5.886 14 Si 0.871 3.129 15 H -0.274 1.274 16 H -0.289 1.289 17 H -0.258 1.258 18 C 0.150 3.850 19 F -0.115 7.115 20 C -0.110 4.110 21 Cl -0.054 7.054 22 H 0.056 0.944 23 H 0.098 0.902 24 H 0.057 0.943 25 H 0.136 0.864 26 H 0.142 0.858 27 H 0.331 0.669 28 H 0.322 0.678 29 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.595 -9.623 -6.543 15.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.221 6.221 3 C 0.093 3.907 4 C -0.229 4.229 5 C -0.060 4.060 6 C -0.083 4.083 7 C 0.104 3.896 8 H 0.075 0.925 9 N -0.383 5.383 10 C -0.586 4.586 11 H 0.095 0.905 12 C -0.128 4.128 13 N -0.522 5.522 14 Si 0.700 3.300 15 H -0.200 1.200 16 H -0.215 1.215 17 H -0.183 1.183 18 C 0.129 3.871 19 F -0.093 7.093 20 C -0.138 4.138 21 Cl -0.025 7.025 22 H 0.074 0.926 23 H 0.117 0.883 24 H 0.075 0.925 25 H 0.153 0.847 26 H 0.160 0.840 27 H 0.144 0.856 28 H 0.138 0.862 29 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.311 -10.250 -7.092 15.558 hybrid contribution 0.546 1.192 0.455 1.388 sum -8.764 -9.058 -6.637 14.245 Atomic orbital electron populations 1.23062 0.78347 1.03783 1.01516 1.86102 1.21243 1.25964 1.88765 1.18173 0.89502 0.85097 0.97969 1.21156 0.99986 0.91531 1.10270 1.20742 0.93416 0.97204 0.94601 1.20042 0.93606 0.94885 0.99729 1.18330 0.90684 0.84640 0.95994 0.92479 1.59742 1.11462 1.09780 1.57268 1.21523 1.38835 1.05309 0.92930 0.90520 1.25002 0.94394 0.97898 0.95516 1.69879 1.38459 1.24360 1.19539 0.87031 0.78077 0.81572 0.83367 1.20042 1.21545 1.18258 1.16866 0.77868 0.91170 1.01190 1.91540 1.27768 1.96855 1.93138 1.19967 0.89598 0.87435 1.16828 1.98333 1.71675 1.35202 1.97323 0.92562 0.88323 0.92487 0.84654 0.84024 0.85611 0.86202 0.92251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.25 15 2 O -0.31 -4.31 9.95 -19.48 -0.19 -4.50 15 3 C 0.14 2.22 6.68 -39.20 -0.26 1.96 15 4 C -0.21 -3.08 9.04 -39.43 -0.36 -3.44 15 5 C -0.04 -0.70 9.24 -39.61 -0.37 -1.06 15 6 C -0.08 -1.66 5.03 -104.53 -0.53 -2.19 15 7 C 0.21 4.92 2.19 -70.02 -0.15 4.77 15 8 H 0.06 1.41 7.00 -51.93 -0.36 1.05 15 9 N -0.85 -17.51 8.62 -6.65 -0.06 -17.57 15 10 C -0.55 -14.84 9.28 -34.44 -0.32 -15.16 15 11 H 0.08 2.31 7.98 -52.48 -0.42 1.89 15 12 C 0.08 2.11 5.47 -17.82 -0.10 2.01 15 13 N -0.89 -26.21 13.96 55.43 0.77 -25.44 15 14 Si 0.87 20.45 24.61 -169.99 -4.18 16.27 15 15 H -0.27 -6.07 7.01 56.52 0.40 -5.68 15 16 H -0.29 -6.88 7.11 56.52 0.40 -6.47 15 17 H -0.26 -5.92 6.54 56.52 0.37 -5.55 15 18 C 0.15 3.08 7.21 -39.42 -0.28 2.79 15 19 F -0.11 -2.53 16.23 2.25 0.04 -2.49 15 20 C -0.11 -2.01 6.34 -39.30 -0.25 -2.26 15 21 Cl -0.05 -0.92 28.16 -51.86 -1.46 -2.38 15 22 H 0.06 0.44 7.66 -51.93 -0.40 0.04 15 23 H 0.10 0.66 8.14 -51.93 -0.42 0.24 15 24 H 0.06 0.47 7.66 -51.93 -0.40 0.07 15 25 H 0.14 1.49 6.30 -52.48 -0.33 1.16 15 26 H 0.14 2.16 6.24 -52.49 -0.33 1.83 15 27 H 0.33 6.26 7.27 -39.29 -0.29 5.98 15 28 H 0.32 6.84 4.30 -39.29 -0.17 6.67 15 29 H 0.27 7.41 8.31 -40.82 -0.34 7.07 15 LS Contribution 263.36 15.07 3.97 3.97 Total: -1.00 -30.15 263.36 -5.03 -35.18 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -2.29 Total: 8.28 kcal Atomic # 6 Polarization: -9.70 SS G_CDS: -1.62 Total: -11.32 kcal Atomic # 7 Polarization: -43.72 SS G_CDS: 0.72 Total: -43.00 kcal Atomic # 8 Polarization: -4.31 SS G_CDS: -0.19 Total: -4.50 kcal Atomic # 9 Polarization: -2.53 SS G_CDS: 0.04 Total: -2.49 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -4.18 Total: 16.27 kcal Atomic # 17 Polarization: -0.92 SS G_CDS: -1.46 Total: -2.38 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -30.15 -5.03 -35.18 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260514637.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.811 kcal (2) G-P(sol) polarization free energy of solvation -30.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds