Wall clock time and date at job start Mon Mar 30 2020 06:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35917 * 117.00183 * 2 1 4 4 C 1.38737 * 120.04965 * 0.05142 * 3 2 1 5 5 C 1.38153 * 120.00899 * 179.97438 * 4 3 2 6 6 C 1.38255 * 120.09558 * 359.97438 * 5 4 3 7 7 C 1.50704 * 119.94887 * 180.02562 * 6 5 4 8 8 H 1.09005 * 109.46638 * 220.00047 * 7 6 5 9 9 N 1.46895 * 109.47036 * 339.99791 * 7 6 5 10 10 C 1.50696 * 109.47104 * 100.00288 * 7 6 5 11 11 H 1.08007 * 120.00053 * 359.97438 * 10 7 6 12 12 C 1.37880 * 120.00233 * 179.97438 * 10 7 6 13 13 N 1.31506 * 120.00187 * 179.97438 * 12 10 7 14 14 Si 1.86803 * 119.99498 * 359.97438 * 12 10 7 15 15 H 1.48498 * 109.47021 * 90.00487 * 14 12 10 16 16 H 1.48503 * 109.46789 * 210.00374 * 14 12 10 17 17 H 1.48493 * 109.47272 * 330.00257 * 14 12 10 18 18 C 1.38455 * 120.09331 * 359.97438 * 6 5 4 19 19 F 1.35102 * 120.00121 * 179.97438 * 18 6 5 20 20 C 1.38465 * 119.99896 * 0.02562 * 18 6 5 21 21 Cl 1.73597 * 120.05311 * 180.02562 * 20 18 6 22 22 H 1.08999 * 109.46787 * 59.99267 * 1 2 3 23 23 H 1.08995 * 109.46930 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47010 * 300.00020 * 1 2 3 25 25 H 1.08004 * 119.99147 * 359.97438 * 4 3 2 26 26 H 1.08000 * 119.95243 * 180.27276 * 5 4 3 27 27 H 1.00897 * 111.00323 * 60.00474 * 9 7 6 28 28 H 1.00907 * 110.99907 * 183.95309 * 9 7 6 29 29 H 0.96998 * 120.00358 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2915 2.3752 0.0011 5 6 1.9197 3.6057 0.0016 6 6 3.3002 3.6794 0.0016 7 6 3.9820 5.0234 0.0028 8 1 4.8484 4.9918 -0.6579 9 7 3.0428 6.0492 -0.4700 10 6 4.4294 5.3585 1.4022 11 1 4.2387 4.6675 2.2102 12 6 5.0821 6.5472 1.6513 13 7 5.4721 6.8398 2.8727 14 14 5.4125 7.7419 0.2538 15 1 4.2706 8.6827 0.1266 16 1 6.6538 8.5056 0.5386 17 1 5.5757 6.9871 -1.0145 18 6 4.0573 2.5201 0.0016 19 9 5.4063 2.5942 0.0011 20 6 3.4318 1.2848 0.0011 21 17 4.3796 -0.1696 0.0017 22 1 -0.3633 0.5140 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 0.2129 2.3195 0.0015 26 1 1.3314 4.5114 0.0069 27 1 2.2304 6.0981 0.1264 28 1 3.4948 6.9487 -0.5397 29 1 5.9316 7.6759 3.0479 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260514637.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:44 Heat of formation + Delta-G solvation = -75.861462 kcal Electronic energy + Delta-G solvation = -17236.755537 eV Core-core repulsion = 14100.115017 eV Total energy + Delta-G solvation = -3136.640520 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.92698 -41.16539 -38.89956 -37.64704 -36.30928 -33.95905 -31.60474 -30.86743 -28.38961 -27.87716 -24.77132 -23.61510 -21.87555 -19.62439 -19.18147 -18.30709 -17.45652 -17.16655 -17.01869 -16.51857 -16.31236 -16.12792 -15.53078 -15.13368 -14.43591 -14.22156 -13.98008 -13.91184 -13.62913 -13.11996 -12.83148 -12.81237 -12.47983 -12.16760 -12.03949 -11.88988 -11.70841 -11.57260 -10.92279 -9.76696 -9.60688 -9.05221 -8.40942 -6.50351 -0.03495 0.20483 1.01633 1.22389 1.33339 1.41671 2.10501 2.20533 2.47098 2.91345 3.36762 3.63261 3.82950 4.01244 4.09613 4.23528 4.44184 4.48925 4.59874 4.81213 4.85935 5.00440 5.17239 5.32402 5.39842 5.60076 5.99523 6.25897 6.31311 6.53164 6.67887 7.16044 8.75318 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.029180 B = 0.006784 C = 0.006002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.337415 B = 4126.145265 C = 4664.270917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.318 6.318 3 C 0.151 3.849 4 C -0.191 4.191 5 C -0.037 4.037 6 C -0.114 4.114 7 C 0.222 3.778 8 H 0.037 0.963 9 N -0.832 5.832 10 C -0.547 4.547 11 H 0.030 0.970 12 C 0.020 3.980 13 N -0.936 5.936 14 Si 0.936 3.064 15 H -0.244 1.244 16 H -0.293 1.293 17 H -0.251 1.251 18 C 0.121 3.879 19 F -0.136 7.136 20 C -0.126 4.126 21 Cl -0.050 7.050 22 H 0.075 0.925 23 H 0.123 0.877 24 H 0.070 0.930 25 H 0.183 0.817 26 H 0.162 0.838 27 H 0.343 0.657 28 H 0.320 0.680 29 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.352 -9.832 -8.084 17.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.232 6.232 3 C 0.104 3.896 4 C -0.209 4.209 5 C -0.055 4.055 6 C -0.116 4.116 7 C 0.112 3.888 8 H 0.055 0.945 9 N -0.366 5.366 10 C -0.587 4.587 11 H 0.048 0.952 12 C -0.180 4.180 13 N -0.574 5.574 14 Si 0.761 3.239 15 H -0.169 1.169 16 H -0.220 1.220 17 H -0.175 1.175 18 C 0.100 3.900 19 F -0.115 7.115 20 C -0.154 4.154 21 Cl -0.021 7.021 22 H 0.093 0.907 23 H 0.141 0.859 24 H 0.089 0.911 25 H 0.200 0.800 26 H 0.179 0.821 27 H 0.157 0.843 28 H 0.136 0.864 29 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.111 -10.478 -8.642 18.197 hybrid contribution 1.273 1.055 0.993 1.929 sum -10.838 -9.423 -7.649 16.271 Atomic orbital electron populations 1.23517 0.75360 1.06135 1.03037 1.86120 1.24228 1.24786 1.88033 1.18302 0.88821 0.86528 0.95997 1.21572 1.02073 0.89788 1.07494 1.21002 0.91930 0.99147 0.93452 1.19958 0.95259 0.93438 1.02936 1.18002 0.91027 0.86981 0.92784 0.94495 1.59656 1.11023 1.09025 1.56882 1.21730 1.38613 1.04311 0.94044 0.95161 1.25884 0.94075 0.99977 0.98074 1.70035 1.40045 1.25312 1.22053 0.85980 0.78614 0.79383 0.79914 1.16891 1.22044 1.17511 1.17171 0.77208 0.92459 1.03165 1.91469 1.29337 1.97046 1.93622 1.20092 0.90877 0.86903 1.17535 1.98322 1.71892 1.34585 1.97336 0.90677 0.85859 0.91131 0.79989 0.82086 0.84275 0.86398 0.92126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 9.81 113.37 1.11 1.29 15 2 O -0.32 -7.88 9.95 -92.62 -0.92 -8.80 15 3 C 0.15 4.46 6.68 22.52 0.15 4.61 15 4 C -0.19 -4.87 9.04 22.37 0.20 -4.67 15 5 C -0.04 -1.17 9.24 22.25 0.21 -0.97 15 6 C -0.11 -4.68 5.03 -19.81 -0.10 -4.78 15 7 C 0.22 10.34 2.19 43.42 0.10 10.44 15 8 H 0.04 1.86 7.00 -2.38 -0.02 1.84 15 9 N -0.83 -32.86 8.62 -174.96 -1.51 -34.37 15 10 C -0.55 -30.69 9.28 25.60 0.24 -30.45 15 11 H 0.03 1.92 7.98 -2.91 -0.02 1.90 15 12 C 0.02 1.10 5.47 84.66 0.46 1.57 15 13 N -0.94 -57.15 13.96 21.45 0.30 -56.85 15 14 Si 0.94 42.25 24.61 68.60 1.69 43.94 15 15 H -0.24 -9.82 7.01 99.48 0.70 -9.13 15 16 H -0.29 -13.40 7.11 99.48 0.71 -12.70 15 17 H -0.25 -10.96 6.54 99.48 0.65 -10.31 15 18 C 0.12 5.06 7.21 22.38 0.16 5.22 15 19 F -0.14 -6.31 16.23 44.97 0.73 -5.58 15 20 C -0.13 -4.55 6.34 22.45 0.14 -4.41 15 21 Cl -0.05 -1.69 28.16 -2.72 -0.08 -1.77 15 22 H 0.07 0.77 7.66 -2.39 -0.02 0.75 15 23 H 0.12 1.08 8.14 -2.39 -0.02 1.07 15 24 H 0.07 0.80 7.66 -2.39 -0.02 0.78 15 25 H 0.18 2.91 6.30 -2.91 -0.02 2.89 15 26 H 0.16 4.37 6.24 -2.91 -0.02 4.35 15 27 H 0.34 12.20 7.27 -89.70 -0.65 11.55 15 28 H 0.32 12.84 4.30 -89.69 -0.39 12.45 15 29 H 0.27 15.35 8.31 -92.71 -0.77 14.58 15 Total: -1.00 -68.56 263.36 2.99 -65.57 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: 0.11 Total: 20.02 kcal Atomic # 6 Polarization: -24.83 SS G_CDS: 2.67 Total: -22.16 kcal Atomic # 7 Polarization: -90.01 SS G_CDS: -1.21 Total: -91.22 kcal Atomic # 8 Polarization: -7.88 SS G_CDS: -0.92 Total: -8.80 kcal Atomic # 9 Polarization: -6.31 SS G_CDS: 0.73 Total: -5.58 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 1.69 Total: 43.94 kcal Atomic # 17 Polarization: -1.69 SS G_CDS: -0.08 Total: -1.77 kcal Total: -68.56 2.99 -65.57 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260514637.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.291 kcal (2) G-P(sol) polarization free energy of solvation -68.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds