Wall clock time and date at job start Mon Mar 30 2020 06:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 H 1.09000 * 109.47017 * 54.99395 * 10 9 7 12 12 N 1.46908 * 109.46833 * 294.99820 * 10 9 7 13 13 C 1.50695 * 109.47310 * 174.99934 * 10 9 7 14 14 C 1.38291 * 119.93074 * 79.72203 * 13 10 9 15 15 C 1.38329 * 120.04558 * 179.77092 * 14 13 10 16 16 F 1.35100 * 120.03788 * 180.23705 * 15 14 13 17 17 C 1.38902 * 119.91815 * 0.50142 * 15 14 13 18 18 O 1.35981 * 120.06367 * 179.77077 * 17 15 14 19 19 C 1.38716 * 119.86657 * 359.75367 * 17 15 14 20 20 Cl 1.73599 * 120.02516 * 179.97438 * 19 17 15 21 21 C 1.38213 * 119.93237 * 259.99826 * 13 10 9 22 22 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 24 24 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 25 25 H 1.00902 * 111.00072 * 299.99814 * 12 10 9 26 26 H 1.00901 * 110.99845 * 63.95541 * 12 10 9 27 27 H 1.07996 * 119.97700 * 0.02562 * 14 13 10 28 28 H 0.96706 * 113.99650 * 269.97595 * 18 17 15 29 29 H 1.08007 * 119.96313 * 359.97438 * 21 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 1 2.9292 -3.5590 0.8318 12 7 3.0083 -3.6484 -1.2657 13 6 1.4957 -4.9642 0.1075 14 6 0.8895 -5.5149 -1.0068 15 6 0.2050 -6.7124 -0.9022 16 9 -0.3830 -7.2526 -1.9920 17 6 0.1184 -7.3559 0.3257 18 8 -0.5577 -8.5308 0.4328 19 6 0.7232 -6.7977 1.4423 20 17 0.6169 -7.5981 2.9791 21 6 1.4107 -5.6027 1.3304 22 1 -0.4850 0.8401 -0.0004 23 1 0.6242 -2.5609 0.8844 24 1 0.6244 -2.5529 -0.8956 25 1 2.3960 -3.7427 -2.0622 26 1 3.5700 -2.8134 -1.3381 27 1 0.9541 -5.0118 -1.9602 28 1 -1.4957 -8.4270 0.6443 29 1 1.8817 -5.1680 2.1997 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260519682.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:30 Heat of formation + Delta-G solvation = -83.031278 kcal Electronic energy + Delta-G solvation = -16749.736926 eV Core-core repulsion = 13612.785499 eV Total energy + Delta-G solvation = -3136.951427 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.052 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.83836 -39.71571 -37.46317 -36.52773 -34.89294 -32.51730 -30.44697 -29.34446 -28.05756 -24.69701 -22.96581 -22.38933 -20.11084 -18.69124 -17.40747 -16.78129 -16.35940 -16.03326 -15.23018 -14.91066 -14.71383 -14.55228 -14.08842 -13.48147 -13.08337 -12.75923 -12.58484 -12.27787 -12.19628 -11.65541 -11.28003 -11.09805 -10.94399 -10.68866 -10.67134 -10.44412 -10.02739 -9.31190 -8.67183 -8.61606 -8.49376 -7.86055 -6.18257 -4.23570 1.02980 1.08904 2.02489 3.20251 3.29031 3.31490 3.43645 3.90080 4.30542 4.35099 4.82266 4.97146 5.16950 5.29907 5.31799 5.56413 5.84482 5.92785 6.03623 6.12324 6.47354 6.62596 6.72171 7.30398 7.42105 7.44707 7.74061 7.85563 8.06277 8.17993 8.82786 9.42599 10.92322 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.027304 B = 0.005164 C = 0.004759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.249176 B = 5421.250260 C = 5882.022858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.061 3.939 3 Si 0.894 3.106 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.528 4.528 8 H 0.059 0.941 9 C -0.001 4.001 10 C 0.124 3.876 11 H 0.086 0.914 12 N -0.839 5.839 13 C -0.012 4.012 14 C -0.124 4.124 15 C 0.088 3.912 16 F -0.131 7.131 17 C 0.061 3.939 18 O -0.479 6.479 19 C -0.032 4.032 20 Cl -0.055 7.055 21 C -0.105 4.105 22 H 0.262 0.738 23 H 0.022 0.978 24 H 0.020 0.980 25 H 0.330 0.670 26 H 0.351 0.649 27 H 0.144 0.856 28 H 0.389 0.611 29 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.155 -12.321 1.451 12.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.141 4.141 3 Si 0.721 3.279 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.567 4.567 8 H 0.077 0.923 9 C -0.039 4.039 10 C 0.013 3.987 11 H 0.104 0.896 12 N -0.369 5.369 13 C -0.013 4.013 14 C -0.143 4.143 15 C 0.068 3.932 16 F -0.109 7.109 17 C 0.014 3.986 18 O -0.288 6.288 19 C -0.060 4.060 20 Cl -0.026 7.026 21 C -0.124 4.124 22 H 0.072 0.928 23 H 0.041 0.959 24 H 0.038 0.962 25 H 0.142 0.858 26 H 0.165 0.835 27 H 0.161 0.839 28 H 0.244 0.756 29 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 0.568 -13.211 1.702 13.332 hybrid contribution -0.907 1.870 -0.136 2.083 sum -0.339 -11.340 1.566 11.453 Atomic orbital electron populations 1.69973 1.06137 1.26837 1.49802 1.25017 0.94839 0.99414 0.94870 0.86508 0.80105 0.83546 0.77691 1.19592 1.20979 1.20930 1.21145 0.92983 0.90572 1.51957 0.92269 1.19837 0.94350 0.91540 0.98180 1.20622 0.94827 0.89568 0.93707 0.89632 1.59266 1.27837 1.46274 1.03495 1.20029 0.94368 0.95853 0.91053 1.21007 0.98178 0.94019 1.01106 1.17801 0.98892 0.93641 0.82850 1.91495 1.81945 1.85558 1.51919 1.17900 1.01418 0.88783 0.90481 1.84895 1.26119 1.25084 1.92741 1.21007 1.03220 0.95192 0.86567 1.98361 1.97074 1.79572 1.27608 1.20953 0.99602 0.92932 0.98961 0.92824 0.95919 0.96203 0.85848 0.83460 0.83859 0.75563 0.83839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.24 13.29 55.43 0.74 -24.50 15 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 15 3 Si 0.89 20.41 29.54 -169.99 -5.02 15.39 15 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 15 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 7 C -0.53 -13.46 8.55 -34.44 -0.29 -13.76 15 8 H 0.06 1.45 7.14 -52.49 -0.37 1.08 15 9 C 0.00 -0.02 4.60 -27.88 -0.13 -0.14 15 10 C 0.12 2.29 2.99 -68.86 -0.21 2.08 15 11 H 0.09 1.58 8.00 -51.93 -0.42 1.17 15 12 N -0.84 -14.29 9.02 -5.65 -0.05 -14.34 15 13 C -0.01 -0.20 4.96 -104.61 -0.52 -0.72 15 14 C -0.12 -1.96 9.26 -39.53 -0.37 -2.33 15 15 C 0.09 1.35 7.31 -39.30 -0.29 1.07 15 16 F -0.13 -2.01 17.11 2.25 0.04 -1.97 15 17 C 0.06 0.89 6.70 -39.16 -0.26 0.62 15 18 O -0.48 -6.13 12.83 -19.68 -0.25 -6.39 15 19 C -0.03 -0.47 6.33 -39.37 -0.25 -0.72 15 20 Cl -0.06 -0.71 28.50 -51.86 -1.48 -2.19 15 21 C -0.11 -1.60 9.44 -39.56 -0.37 -1.98 15 22 H 0.26 7.06 8.31 -40.82 -0.34 6.72 15 23 H 0.02 0.57 8.14 -51.93 -0.42 0.15 15 24 H 0.02 0.49 8.14 -51.93 -0.42 0.07 15 25 H 0.33 5.33 7.35 -39.29 -0.29 5.04 15 26 H 0.35 6.11 7.90 -39.29 -0.31 5.80 15 27 H 0.14 2.15 6.67 -52.49 -0.35 1.80 15 28 H 0.39 3.26 9.06 45.56 0.41 3.67 15 29 H 0.14 2.00 8.03 -52.48 -0.42 1.58 15 LS Contribution 275.96 15.07 4.16 4.16 Total: -1.00 -28.52 275.96 -6.38 -34.90 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -1.73 Total: 9.27 kcal Atomic # 6 Polarization: -11.55 SS G_CDS: -2.78 Total: -14.33 kcal Atomic # 7 Polarization: -39.53 SS G_CDS: 0.69 Total: -38.84 kcal Atomic # 8 Polarization: -6.13 SS G_CDS: -0.25 Total: -6.39 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.04 Total: -1.97 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.48 Total: -2.19 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -28.52 -6.38 -34.90 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260519682.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.129 kcal (2) G-P(sol) polarization free energy of solvation -28.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds