Wall clock time and date at job start Mon Mar 30 2020 06:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35913 * 117.00146 * 2 1 4 4 C 1.38870 * 120.04923 * 270.22790 * 3 2 1 5 5 Cl 1.73605 * 120.00862 * 0.02738 * 4 3 2 6 6 C 1.38210 * 119.97614 * 180.29664 * 4 3 2 7 7 C 1.38267 * 120.06636 * 359.75185 * 6 4 3 8 8 C 1.38452 * 120.09213 * 359.97373 * 7 6 4 9 9 F 1.35097 * 119.98523 * 179.97438 * 8 7 6 10 10 C 1.38408 * 120.02886 * 0.02612 * 8 7 6 11 11 C 1.50696 * 120.03488 * 179.97438 * 10 8 7 12 12 H 1.09000 * 109.47002 * 164.99934 * 11 10 8 13 13 N 1.46899 * 109.46970 * 44.99943 * 11 10 8 14 14 C 1.50690 * 109.47412 * 285.00003 * 11 10 8 15 15 H 1.08006 * 119.99999 * 24.76532 * 14 11 10 16 16 C 1.37880 * 120.00158 * 204.76846 * 14 11 10 17 17 N 1.31512 * 120.00002 * 357.79954 * 16 14 11 18 18 Si 1.86800 * 119.99940 * 177.80329 * 16 14 11 19 19 H 1.48501 * 109.46784 * 269.99565 * 18 16 14 20 20 H 1.48501 * 109.47344 * 29.99933 * 18 16 14 21 21 H 1.48502 * 109.46838 * 149.99952 * 18 16 14 22 22 H 1.08995 * 109.47000 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46569 * 300.00175 * 1 2 3 24 24 H 1.09002 * 109.46805 * 59.99782 * 1 2 3 25 25 H 1.08001 * 119.96696 * 179.72554 * 6 4 3 26 26 H 1.07998 * 119.95018 * 179.97438 * 7 6 4 27 27 H 1.00902 * 111.00548 * 172.71139 * 13 11 10 28 28 H 1.00898 * 111.00445 * 296.67060 * 13 11 10 29 29 H 0.97005 * 119.99685 * 354.41493 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2110 0.0000 4 6 2.3576 1.8327 -1.2020 5 17 1.9582 1.0637 -2.7064 6 6 2.9906 3.0613 -1.2003 7 6 3.3096 3.6746 -0.0028 8 6 2.9953 3.0598 1.1973 9 9 3.3084 3.6607 2.3660 10 6 2.3613 1.8295 1.2000 11 6 2.0197 1.1600 2.5062 12 1 1.3058 0.3561 2.3265 13 7 1.4278 2.1450 3.4212 14 6 3.2720 0.5914 3.1219 15 1 4.2351 1.0124 2.8735 16 6 3.1884 -0.4664 4.0024 17 7 2.0129 -0.9510 4.3383 18 14 4.7449 -1.2110 4.7183 19 1 5.2210 -2.3061 3.8355 20 1 5.7936 -0.1644 4.8184 21 1 4.4572 -1.7544 6.0700 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3632 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 3.2368 3.5427 -2.1353 26 1 3.8046 4.6344 -0.0037 27 1 1.0818 1.6994 4.2577 28 1 2.0895 2.8727 3.6464 29 1 1.2027 -0.5145 4.0316 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260553916.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:31 Heat of formation + Delta-G solvation = -87.620904 kcal Electronic energy + Delta-G solvation = -17695.073639 eV Core-core repulsion = 14557.923191 eV Total energy + Delta-G solvation = -3137.150448 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.95893 -41.11733 -38.26612 -37.63857 -36.79004 -33.58245 -31.30509 -30.90139 -28.03332 -27.44909 -25.00781 -23.54524 -22.42595 -19.45043 -19.06048 -18.49237 -17.35457 -17.02131 -16.79438 -16.32831 -16.10765 -15.75297 -15.65353 -14.91997 -14.50849 -14.36531 -14.09342 -13.91549 -13.46042 -13.31810 -12.78337 -12.70303 -12.16161 -12.13640 -12.01230 -11.61369 -11.54410 -11.04079 -10.71886 -9.93201 -9.53849 -9.31443 -8.64745 -6.46319 -0.15858 0.06331 1.01648 1.47978 1.54855 1.73205 2.20710 2.49262 2.68172 3.09373 3.30736 3.60601 3.91858 4.07841 4.26598 4.31995 4.33084 4.37819 4.57317 4.66982 4.93631 4.95500 5.03201 5.28545 5.61206 5.77771 5.99953 6.34877 6.44061 6.48147 6.75495 7.31744 8.66288 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.021552 B = 0.008207 C = 0.007193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.875802 B = 3411.083404 C = 3891.825190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.341 6.341 3 C 0.108 3.892 4 C -0.070 4.070 5 Cl -0.048 7.048 6 C -0.075 4.075 7 C -0.136 4.136 8 C 0.099 3.901 9 F -0.135 7.135 10 C -0.102 4.102 11 C 0.231 3.769 12 H 0.038 0.962 13 N -0.851 5.851 14 C -0.627 4.627 15 H 0.034 0.966 16 C -0.014 4.014 17 N -0.923 5.923 18 Si 1.112 2.888 19 H -0.277 1.277 20 H -0.275 1.275 21 H -0.279 1.279 22 H 0.110 0.890 23 H 0.034 0.966 24 H 0.065 0.935 25 H 0.185 0.815 26 H 0.180 0.820 27 H 0.327 0.673 28 H 0.333 0.667 29 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.082 7.689 -11.932 14.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.258 6.258 3 C 0.063 3.937 4 C -0.097 4.097 5 Cl -0.019 7.019 6 C -0.094 4.094 7 C -0.155 4.155 8 C 0.079 3.921 9 F -0.114 7.114 10 C -0.104 4.104 11 C 0.122 3.878 12 H 0.056 0.944 13 N -0.381 5.381 14 C -0.667 4.667 15 H 0.053 0.947 16 C -0.215 4.215 17 N -0.560 5.560 18 Si 0.934 3.066 19 H -0.203 1.203 20 H -0.201 1.201 21 H -0.204 1.204 22 H 0.128 0.872 23 H 0.053 0.947 24 H 0.083 0.917 25 H 0.203 0.797 26 H 0.197 0.803 27 H 0.137 0.863 28 H 0.148 0.852 29 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.145 6.398 -11.668 13.308 hybrid contribution -0.167 0.771 0.138 0.801 sum -0.022 7.169 -11.529 13.576 Atomic orbital electron populations 1.23117 0.77451 1.04453 1.00750 1.86049 1.21416 1.24201 1.94108 1.18110 0.98485 0.86944 0.90196 1.21400 1.05935 0.96070 0.86338 1.98337 1.92656 1.81419 1.29444 1.21074 0.96587 0.91934 0.99788 1.21412 1.02425 1.02644 0.89006 1.17688 1.00052 0.91997 0.82347 1.91334 1.90584 1.82559 1.46888 1.20580 0.99216 0.93901 0.96717 1.17828 0.93657 0.89813 0.86527 0.94359 1.59621 1.42811 1.16029 1.19657 1.22683 0.93762 1.21134 1.29087 0.94717 1.27119 1.05091 0.94553 0.94701 1.70891 0.98328 1.41382 1.45365 0.82994 0.71422 0.75910 0.76275 1.20255 1.20056 1.20427 0.87197 0.94694 0.91678 0.79748 0.80269 0.86276 0.85224 0.92848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.19 10.74 113.37 1.22 2.41 15 2 O -0.34 -14.15 8.90 -92.57 -0.82 -14.97 15 3 C 0.11 4.33 5.69 22.52 0.13 4.46 15 4 C -0.07 -2.22 6.33 22.41 0.14 -2.08 15 5 Cl -0.05 -1.29 28.50 -2.72 -0.08 -1.37 15 6 C -0.08 -1.91 9.82 22.27 0.22 -1.69 15 7 C -0.14 -3.79 10.02 22.33 0.22 -3.57 15 8 C 0.10 3.81 7.01 22.36 0.16 3.97 15 9 F -0.14 -5.45 14.37 44.97 0.65 -4.81 15 10 C -0.10 -4.51 4.94 -19.73 -0.10 -4.61 15 11 C 0.23 11.79 2.38 43.42 0.10 11.90 15 12 H 0.04 2.14 5.12 -2.39 -0.01 2.13 15 13 N -0.85 -40.31 9.05 -174.97 -1.58 -41.89 15 14 C -0.63 -35.32 8.49 25.60 0.22 -35.11 15 15 H 0.03 2.01 7.81 -2.91 -0.02 1.98 15 16 C -0.01 -0.78 5.46 84.66 0.46 -0.32 15 17 N -0.92 -54.67 13.58 21.45 0.29 -54.38 15 18 Si 1.11 50.67 29.90 68.60 2.05 52.72 15 19 H -0.28 -12.16 7.11 99.48 0.71 -11.46 15 20 H -0.28 -11.86 7.11 99.48 0.71 -11.15 15 21 H -0.28 -12.43 7.11 99.48 0.71 -11.72 15 22 H 0.11 3.17 8.14 -2.39 -0.02 3.15 15 23 H 0.03 1.25 7.62 -2.38 -0.02 1.23 15 24 H 0.06 1.81 8.14 -2.39 -0.02 1.79 15 25 H 0.19 3.02 8.06 -2.91 -0.02 2.99 15 26 H 0.18 3.51 8.06 -2.91 -0.02 3.48 15 27 H 0.33 15.93 8.52 -89.69 -0.76 15.16 15 28 H 0.33 15.38 6.24 -89.70 -0.56 14.83 15 29 H 0.26 15.51 6.30 -92.70 -0.58 14.93 15 Total: -1.00 -65.33 270.51 3.35 -61.98 By element: Atomic # 1 Polarization: 27.28 SS G_CDS: 0.07 Total: 27.36 kcal Atomic # 6 Polarization: -27.41 SS G_CDS: 2.77 Total: -24.64 kcal Atomic # 7 Polarization: -94.98 SS G_CDS: -1.29 Total: -96.27 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: -0.82 Total: -14.97 kcal Atomic # 9 Polarization: -5.45 SS G_CDS: 0.65 Total: -4.81 kcal Atomic # 14 Polarization: 50.67 SS G_CDS: 2.05 Total: 52.72 kcal Atomic # 17 Polarization: -1.29 SS G_CDS: -0.08 Total: -1.37 kcal Total: -65.33 3.35 -61.98 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260553916.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.637 kcal (2) G-P(sol) polarization free energy of solvation -65.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds