Wall clock time and date at job start Mon Mar 30 2020 06:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35925 * 117.00216 * 2 1 4 4 C 1.38861 * 120.04528 * 269.97961 * 3 2 1 5 5 Cl 1.73604 * 120.01466 * 0.04701 * 4 3 2 6 6 C 1.38218 * 119.97373 * 180.02562 * 4 3 2 7 7 C 1.38266 * 120.06370 * 359.97438 * 6 4 3 8 8 C 1.38455 * 120.09376 * 359.76080 * 7 6 4 9 9 F 1.35096 * 119.98746 * 180.25579 * 8 7 6 10 10 C 1.38404 * 120.02618 * 0.51272 * 8 7 6 11 11 C 1.50698 * 120.03614 * 179.74149 * 10 8 7 12 12 H 1.08997 * 109.47667 * 194.72499 * 11 10 8 13 13 N 1.46905 * 109.47084 * 314.72827 * 11 10 8 14 14 C 1.50699 * 109.46812 * 74.72459 * 11 10 8 15 15 H 1.07999 * 120.00803 * 0.02562 * 14 11 10 16 16 C 1.37881 * 119.99889 * 180.02562 * 14 11 10 17 17 N 1.31520 * 120.00186 * 180.02562 * 16 14 11 18 18 Si 1.86798 * 120.00030 * 0.02562 * 16 14 11 19 19 H 1.48506 * 109.47297 * 89.99863 * 18 16 14 20 20 H 1.48503 * 109.47261 * 330.00044 * 18 16 14 21 21 H 1.48500 * 109.47454 * 210.00037 * 18 16 14 22 22 H 1.09003 * 109.46598 * 300.00138 * 1 2 3 23 23 H 1.09001 * 109.47053 * 59.99505 * 1 2 3 24 24 H 1.08994 * 109.47275 * 180.02562 * 1 2 3 25 25 H 1.08002 * 119.96714 * 180.02562 * 6 4 3 26 26 H 1.08006 * 119.95062 * 180.02562 * 7 6 4 27 27 H 1.00897 * 110.99897 * 59.99532 * 13 11 10 28 28 H 1.00899 * 111.00034 * 183.95093 * 13 11 10 29 29 H 0.96998 * 120.00124 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2111 0.0000 4 6 2.3622 1.8303 -1.2020 5 17 1.9682 1.0587 -2.7064 6 6 2.9902 3.0616 -1.2003 7 6 3.3036 3.6776 -0.0028 8 6 2.9848 3.0651 1.1973 9 9 3.2874 3.6713 2.3661 10 6 2.3611 1.8296 1.2001 11 6 2.0192 1.1601 2.5062 12 1 1.7829 0.1114 2.3261 13 7 3.1661 1.2538 3.4193 14 6 0.8276 1.8446 3.1246 15 1 0.3638 2.6804 2.6220 16 6 0.3292 1.4036 4.3322 17 7 -0.7111 2.0006 4.8718 18 14 1.1317 -0.0417 5.2020 19 1 2.1992 0.4557 6.1067 20 1 1.7237 -0.9588 4.1951 21 1 0.1103 -0.7710 5.9957 22 1 -0.3632 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 3.2356 3.5434 -2.1353 26 1 3.7940 4.6399 -0.0036 27 1 3.4050 2.2169 3.6022 28 1 2.9858 0.7566 4.2786 29 1 -1.0614 1.6906 5.7215 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260553920.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:34 Heat of formation + Delta-G solvation = -75.313204 kcal Electronic energy + Delta-G solvation = -17748.660700 eV Core-core repulsion = 14612.043954 eV Total energy + Delta-G solvation = -3136.616746 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.94251 -41.09243 -38.21762 -37.61227 -36.72051 -34.03157 -31.42520 -30.90329 -28.35886 -27.65273 -25.02380 -23.51247 -22.12437 -19.38278 -19.20602 -18.28683 -17.57150 -17.03035 -16.93361 -16.53723 -16.29365 -15.92016 -15.51138 -15.14686 -14.55572 -14.17209 -13.94585 -13.90413 -13.68935 -13.30070 -12.82954 -12.73469 -12.62788 -12.10828 -12.04476 -11.89033 -11.57744 -11.00485 -10.93190 -9.95036 -9.51293 -9.39182 -8.44412 -6.52439 -0.12756 0.06522 1.05090 1.20095 1.28537 1.37655 2.16910 2.19111 2.76972 2.89304 3.33275 3.59565 3.93035 4.04863 4.18534 4.28732 4.40713 4.51289 4.58003 4.81967 4.94104 4.96768 5.04126 5.20217 5.38035 5.61031 5.95339 6.27610 6.36467 6.47960 6.62556 7.13488 8.71206 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.024871 B = 0.008501 C = 0.007134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.535880 B = 3292.938527 C = 3923.989462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.337 6.337 3 C 0.113 3.887 4 C -0.071 4.071 5 Cl -0.046 7.046 6 C -0.072 4.072 7 C -0.137 4.137 8 C 0.104 3.896 9 F -0.134 7.134 10 C -0.103 4.103 11 C 0.219 3.781 12 H 0.050 0.950 13 N -0.849 5.849 14 C -0.541 4.541 15 H 0.034 0.966 16 C 0.027 3.973 17 N -0.931 5.931 18 Si 0.928 3.072 19 H -0.257 1.257 20 H -0.250 1.250 21 H -0.286 1.286 22 H 0.036 0.964 23 H 0.058 0.942 24 H 0.117 0.883 25 H 0.185 0.815 26 H 0.179 0.821 27 H 0.341 0.659 28 H 0.317 0.683 29 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.672 0.170 -12.775 14.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.254 6.254 3 C 0.068 3.932 4 C -0.098 4.098 5 Cl -0.017 7.017 6 C -0.090 4.090 7 C -0.156 4.156 8 C 0.084 3.916 9 F -0.112 7.112 10 C -0.105 4.105 11 C 0.110 3.890 12 H 0.068 0.932 13 N -0.386 5.386 14 C -0.581 4.581 15 H 0.052 0.948 16 C -0.173 4.173 17 N -0.569 5.569 18 Si 0.753 3.247 19 H -0.183 1.183 20 H -0.174 1.174 21 H -0.213 1.213 22 H 0.054 0.946 23 H 0.077 0.923 24 H 0.135 0.865 25 H 0.202 0.798 26 H 0.197 0.803 27 H 0.158 0.842 28 H 0.133 0.867 29 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.005 -0.436 -13.280 15.021 hybrid contribution -1.062 0.107 1.721 2.025 sum 5.942 -0.330 -11.559 13.001 Atomic orbital electron populations 1.23162 0.77223 1.04672 1.00918 1.85926 1.21385 1.23940 1.94126 1.18070 0.98088 0.87045 0.89998 1.21380 1.05894 0.96066 0.86455 1.98341 1.92803 1.81200 1.29391 1.21094 0.96345 0.91811 0.99753 1.21416 1.02559 1.02594 0.89025 1.17707 0.99989 0.91525 0.82361 1.91333 1.90889 1.82166 1.46861 1.20345 0.99449 0.94532 0.96139 1.18112 0.87641 0.96045 0.87231 0.93181 1.59738 1.40599 1.20408 1.17866 1.21628 1.14351 1.16319 1.05804 0.94787 1.25731 0.95042 0.98796 0.97762 1.70014 1.24973 1.42644 1.19303 0.86092 0.78532 0.80442 0.79586 1.18271 1.17435 1.21301 0.94554 0.92297 0.86497 0.79774 0.80334 0.84193 0.86675 0.92067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.13 11.13 113.37 1.26 2.39 15 2 O -0.34 -12.79 8.71 -92.70 -0.81 -13.60 15 3 C 0.11 4.28 5.69 22.51 0.13 4.41 15 4 C -0.07 -2.12 6.33 22.41 0.14 -1.98 15 5 Cl -0.05 -1.19 28.50 -2.72 -0.08 -1.26 15 6 C -0.07 -1.74 9.82 22.27 0.22 -1.52 15 7 C -0.14 -3.72 10.02 22.33 0.22 -3.49 15 8 C 0.10 3.91 7.00 22.36 0.16 4.07 15 9 F -0.13 -5.39 14.32 44.97 0.64 -4.74 15 10 C -0.10 -4.35 4.90 -19.73 -0.10 -4.44 15 11 C 0.22 10.62 2.29 43.42 0.10 10.72 15 12 H 0.05 2.55 6.20 -2.39 -0.01 2.53 15 13 N -0.85 -38.88 9.03 -174.95 -1.58 -40.46 15 14 C -0.54 -30.25 9.03 25.60 0.23 -30.02 15 15 H 0.03 2.12 7.98 -2.91 -0.02 2.10 15 16 C 0.03 1.52 5.47 84.65 0.46 1.98 15 17 N -0.93 -56.17 13.96 21.45 0.30 -55.87 15 18 Si 0.93 43.21 24.61 68.60 1.69 44.90 15 19 H -0.26 -11.25 7.01 99.48 0.70 -10.56 15 20 H -0.25 -11.32 6.54 99.48 0.65 -10.67 15 21 H -0.29 -13.13 7.11 99.48 0.71 -12.42 15 22 H 0.04 1.45 7.97 -2.39 -0.02 1.43 15 23 H 0.06 1.72 8.14 -2.39 -0.02 1.70 15 24 H 0.12 3.19 8.14 -2.39 -0.02 3.17 15 25 H 0.19 2.86 8.06 -2.91 -0.02 2.84 15 26 H 0.18 3.43 8.06 -2.91 -0.02 3.41 15 27 H 0.34 15.34 6.14 -89.70 -0.55 14.79 15 28 H 0.32 14.43 4.29 -89.69 -0.38 14.04 15 29 H 0.27 15.24 8.31 -92.71 -0.77 14.47 15 Total: -1.00 -65.31 264.78 3.20 -62.11 By element: Atomic # 1 Polarization: 26.61 SS G_CDS: 0.21 Total: 26.81 kcal Atomic # 6 Polarization: -20.72 SS G_CDS: 2.83 Total: -17.89 kcal Atomic # 7 Polarization: -95.04 SS G_CDS: -1.28 Total: -96.32 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: -0.81 Total: -13.60 kcal Atomic # 9 Polarization: -5.39 SS G_CDS: 0.64 Total: -4.74 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 1.69 Total: 44.90 kcal Atomic # 17 Polarization: -1.19 SS G_CDS: -0.08 Total: -1.26 kcal Total: -65.31 3.20 -62.11 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260553920.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.200 kcal (2) G-P(sol) polarization free energy of solvation -65.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds