Wall clock time and date at job start Mon Mar 30 2020 06:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35976 * 117.00076 * 2 1 4 4 C 1.38655 * 120.04982 * 359.97438 * 3 2 1 5 5 C 1.38175 * 119.98326 * 179.97438 * 4 3 2 6 6 C 1.38363 * 120.08218 * 0.02562 * 5 4 3 7 7 Cl 1.73608 * 119.95107 * 179.97438 * 6 5 4 8 8 C 1.38353 * 120.09954 * 359.97438 * 6 5 4 9 9 C 1.50708 * 119.99172 * 180.02562 * 8 6 5 10 10 H 1.08998 * 109.46846 * 13.70076 * 9 8 6 11 11 N 1.46900 * 109.47098 * 133.69980 * 9 8 6 12 12 C 1.50700 * 109.47217 * 253.70185 * 9 8 6 13 13 H 1.07997 * 119.99704 * 0.02562 * 12 9 8 14 14 C 1.37877 * 119.99962 * 180.02562 * 12 9 8 15 15 N 1.31517 * 119.99944 * 359.97438 * 14 12 9 16 16 Si 1.86798 * 119.99757 * 180.02562 * 14 12 9 17 17 H 1.48507 * 109.46911 * 180.02562 * 16 14 12 18 18 H 1.48497 * 109.47261 * 299.99592 * 16 14 12 19 19 H 1.48498 * 109.47489 * 59.99974 * 16 14 12 20 20 C 1.38329 * 120.01790 * 0.27544 * 8 6 5 21 21 F 1.35099 * 120.04050 * 179.71061 * 20 8 6 22 22 H 1.09004 * 109.47252 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47734 * 300.00642 * 1 2 3 24 24 H 1.09002 * 109.46602 * 60.00755 * 1 2 3 25 25 H 1.07995 * 120.00818 * 359.97438 * 4 3 2 26 26 H 1.08000 * 119.96134 * 180.02562 * 5 4 3 27 27 H 1.00901 * 111.00100 * 306.77607 * 11 9 8 28 28 H 1.00900 * 110.99652 * 70.73117 * 11 9 8 29 29 H 0.96994 * 119.99849 * 0.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2922 2.3751 -0.0005 5 6 1.9209 3.6055 0.0000 6 6 3.3026 3.6782 0.0005 7 17 4.0891 5.2260 0.0005 8 6 4.0585 2.5194 0.0011 9 6 5.5633 2.6015 0.0022 10 1 5.8715 3.6182 0.2459 11 7 6.1036 1.6727 1.0039 12 6 6.0877 2.2308 -1.3611 13 1 5.4000 1.9630 -2.1496 14 6 7.4453 2.2336 -1.6017 15 7 8.2826 2.5602 -0.6415 16 14 8.0952 1.7747 -3.2918 17 1 9.5781 1.8543 -3.2902 18 1 7.6747 0.3900 -3.6246 19 1 7.5496 2.7145 -4.3039 20 6 3.4333 1.2855 -0.0047 21 9 4.1710 0.1536 -0.0101 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3632 0.5137 -0.8901 25 1 0.2136 2.3197 -0.0014 26 1 1.3332 4.5115 0.0000 27 1 5.6825 1.8301 1.9073 28 1 5.9832 0.7148 0.7108 29 1 7.9451 2.7988 0.2359 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260558751.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:16 Heat of formation + Delta-G solvation = -85.578779 kcal Electronic energy + Delta-G solvation = -17516.681107 eV Core-core repulsion = 14379.619213 eV Total energy + Delta-G solvation = -3137.061895 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.89023 -41.12334 -39.17361 -37.23814 -36.53057 -33.47279 -31.34319 -30.89478 -28.22042 -27.52672 -24.77288 -23.54894 -22.30135 -19.40788 -18.97794 -18.31559 -17.91449 -17.20133 -16.43625 -16.21179 -16.07997 -15.71700 -15.55970 -15.41132 -14.77599 -14.40155 -13.90364 -13.71519 -13.20599 -13.10744 -12.76726 -12.63391 -12.45941 -12.31578 -11.93036 -11.73804 -11.63532 -10.82331 -10.48479 -9.87065 -9.36045 -9.19209 -8.41798 -6.25938 -0.02516 0.01977 1.14518 1.53790 1.61814 1.80799 2.11904 2.34259 2.62980 3.19342 3.30632 3.62789 3.87344 3.96349 4.19630 4.32424 4.36628 4.39032 4.53444 4.70308 4.87623 4.92368 5.03001 5.30058 5.44500 5.83162 6.14919 6.21343 6.61335 6.72129 6.97970 7.62977 8.96502 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.020093 B = 0.008509 C = 0.006899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.157311 B = 3289.774769 C = 4057.454249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.332 6.332 3 C 0.099 3.901 4 C -0.172 4.172 5 C -0.067 4.067 6 C -0.065 4.065 7 Cl -0.062 7.062 8 C -0.090 4.090 9 C 0.237 3.763 10 H 0.042 0.958 11 N -0.839 5.839 12 C -0.613 4.613 13 H 0.030 0.970 14 C -0.007 4.007 15 N -0.915 5.915 16 Si 1.107 2.893 17 H -0.282 1.282 18 H -0.279 1.279 19 H -0.273 1.273 20 C 0.046 3.954 21 F -0.140 7.140 22 H 0.120 0.880 23 H 0.077 0.923 24 H 0.074 0.926 25 H 0.190 0.810 26 H 0.176 0.824 27 H 0.314 0.686 28 H 0.333 0.667 29 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.071 0.082 1.926 19.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.246 6.246 3 C 0.052 3.948 4 C -0.190 4.190 5 C -0.086 4.086 6 C -0.093 4.093 7 Cl -0.033 7.033 8 C -0.094 4.094 9 C 0.128 3.872 10 H 0.060 0.940 11 N -0.369 5.369 12 C -0.652 4.652 13 H 0.049 0.951 14 C -0.211 4.211 15 N -0.550 5.550 16 Si 0.930 3.070 17 H -0.208 1.208 18 H -0.205 1.205 19 H -0.198 1.198 20 C 0.026 3.974 21 F -0.118 7.118 22 H 0.139 0.861 23 H 0.096 0.904 24 H 0.092 0.908 25 H 0.207 0.793 26 H 0.193 0.807 27 H 0.125 0.875 28 H 0.148 0.852 29 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -16.789 0.142 0.931 16.815 hybrid contribution -1.940 -0.211 1.070 2.226 sum -18.729 -0.069 2.000 18.836 Atomic orbital electron populations 1.23530 0.75172 1.06172 1.03175 1.86140 1.24630 1.25388 1.88439 1.19132 0.89693 0.87166 0.98815 1.21362 1.01935 0.89090 1.06616 1.21247 0.90762 0.99896 0.96686 1.20660 0.93351 0.86050 1.09241 1.98336 1.81509 1.26448 1.97047 1.21075 1.00585 0.90688 0.97078 1.18255 0.82648 0.94131 0.92156 0.93987 1.59328 1.64361 1.08936 1.04304 1.21835 0.94373 1.53456 0.95510 0.95140 1.26908 0.93805 0.93439 1.06996 1.70657 1.38361 1.40905 1.05123 0.83083 0.75675 0.76872 0.71393 1.20764 1.20494 1.19841 1.16894 0.86890 0.82032 1.11581 1.91359 1.76980 1.49036 1.94471 0.86132 0.90437 0.90775 0.79341 0.80701 0.87486 0.85160 0.90875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 9.81 113.37 1.11 1.31 15 2 O -0.33 -9.47 10.36 -93.28 -0.97 -10.44 15 3 C 0.10 3.15 6.69 22.53 0.15 3.31 15 4 C -0.17 -4.06 9.04 22.35 0.20 -3.86 15 5 C -0.07 -1.77 9.82 22.28 0.22 -1.55 15 6 C -0.07 -2.37 6.31 22.33 0.14 -2.23 15 7 Cl -0.06 -2.25 27.06 -2.72 -0.07 -2.33 15 8 C -0.09 -3.93 4.79 -19.81 -0.09 -4.02 15 9 C 0.24 12.27 2.22 43.43 0.10 12.37 15 10 H 0.04 2.32 6.20 -2.39 -0.01 2.30 15 11 N -0.84 -42.09 7.63 -174.94 -1.33 -43.42 15 12 C -0.61 -35.61 8.44 25.60 0.22 -35.39 15 13 H 0.03 1.81 7.74 -2.91 -0.02 1.79 15 14 C -0.01 -0.44 5.39 84.65 0.46 0.02 15 15 N -0.92 -57.19 13.51 21.45 0.29 -56.90 15 16 Si 1.11 52.54 29.90 68.60 2.05 54.59 15 17 H -0.28 -13.29 7.11 99.48 0.71 -12.58 15 18 H -0.28 -12.67 7.11 99.48 0.71 -11.97 15 19 H -0.27 -12.11 7.11 99.48 0.71 -11.41 15 20 C 0.05 1.92 7.00 22.45 0.16 2.08 15 21 F -0.14 -6.45 14.37 44.97 0.65 -5.80 15 22 H 0.12 1.29 8.14 -2.39 -0.02 1.27 15 23 H 0.08 0.83 7.66 -2.39 -0.02 0.81 15 24 H 0.07 0.86 7.66 -2.39 -0.02 0.84 15 25 H 0.19 2.54 6.30 -2.91 -0.02 2.53 15 26 H 0.18 3.18 8.06 -2.91 -0.02 3.16 15 27 H 0.31 13.95 8.95 -89.69 -0.80 13.15 15 28 H 0.33 17.14 6.58 -89.69 -0.59 16.55 15 29 H 0.28 17.70 6.39 -92.71 -0.59 17.11 15 Total: -1.00 -72.00 267.33 3.27 -68.73 By element: Atomic # 1 Polarization: 23.55 SS G_CDS: 0.00 Total: 23.55 kcal Atomic # 6 Polarization: -30.64 SS G_CDS: 2.66 Total: -27.98 kcal Atomic # 7 Polarization: -99.28 SS G_CDS: -1.04 Total: -100.32 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: -0.97 Total: -10.44 kcal Atomic # 9 Polarization: -6.45 SS G_CDS: 0.65 Total: -5.80 kcal Atomic # 14 Polarization: 52.54 SS G_CDS: 2.05 Total: 54.59 kcal Atomic # 17 Polarization: -2.25 SS G_CDS: -0.07 Total: -2.33 kcal Total: -72.00 3.27 -68.73 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260558751.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.845 kcal (2) G-P(sol) polarization free energy of solvation -72.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds