Wall clock time and date at job start Mon Mar 30 2020 07:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76207 * 102.99967 * 2 1 4 4 C 1.38877 * 120.06776 * 359.72291 * 3 2 1 5 5 C 1.38341 * 119.91194 * 179.74561 * 4 3 2 6 6 F 1.35097 * 119.96126 * 180.27614 * 5 4 3 7 7 C 1.38496 * 120.06759 * 0.55512 * 5 4 3 8 8 C 1.38296 * 120.14707 * 359.69805 * 7 5 4 9 9 C 1.50694 * 119.96129 * 180.02562 * 8 7 5 10 10 H 1.09000 * 109.47249 * 144.97925 * 9 8 7 11 11 N 1.46895 * 109.47089 * 24.98040 * 9 8 7 12 12 C 1.50700 * 109.47270 * 264.97746 * 9 8 7 13 13 H 1.08004 * 119.99872 * 0.02562 * 12 9 8 14 14 C 1.37872 * 119.99996 * 179.97438 * 12 9 8 15 15 N 1.31513 * 120.00369 * 0.02562 * 14 12 9 16 16 Si 1.86803 * 119.99981 * 180.02562 * 14 12 9 17 17 H 1.48498 * 109.47106 * 60.00133 * 16 14 12 18 18 H 1.48504 * 109.47039 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47063 * 300.00050 * 16 14 12 20 20 C 1.38256 * 120.07633 * 0.02656 * 8 7 5 21 21 F 1.35095 * 120.03098 * 180.02562 * 20 8 7 22 22 H 1.09001 * 109.47190 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47089 * 299.99885 * 1 2 3 24 24 H 1.09004 * 109.47568 * 59.99895 * 1 2 3 25 25 H 1.07994 * 120.04533 * 0.02562 * 4 3 2 26 26 H 1.07999 * 119.92768 * 179.72224 * 7 5 4 27 27 H 1.00899 * 111.00046 * 176.04558 * 11 9 8 28 28 H 1.00895 * 111.00372 * 299.99803 * 11 9 8 29 29 H 0.96999 * 120.00370 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 1.1958 2.6652 -0.0058 5 6 1.5106 4.0123 -0.0005 6 9 0.5245 4.9357 -0.0005 7 6 2.8357 4.4153 -0.0010 8 6 3.8481 3.4732 -0.0005 9 6 5.2885 3.9163 -0.0004 10 1 5.8831 3.2189 0.5897 11 7 5.3872 5.2603 0.5840 12 6 5.8054 3.9446 -1.4157 13 1 5.1557 3.6696 -2.2335 14 6 7.1074 4.3225 -1.6666 15 7 7.8984 4.6578 -0.6709 16 14 7.7479 4.3583 -3.4210 17 1 6.9374 5.3083 -4.2246 18 1 9.1674 4.7948 -3.4209 19 1 7.6485 2.9997 -4.0121 20 6 3.5403 2.1253 -0.0001 21 9 4.5301 1.2058 0.0009 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 0.1624 2.3515 -0.0099 26 1 3.0789 5.4675 -0.0013 27 1 6.3499 5.5541 0.6546 28 1 4.8442 5.9257 0.0545 29 1 8.8144 4.9233 -0.8474 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260801183.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:29 Heat of formation + Delta-G solvation = -69.341086 kcal Electronic energy + Delta-G solvation = -17039.601745 eV Core-core repulsion = 13917.660466 eV Total energy + Delta-G solvation = -3121.941280 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.054 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.63739 -48.24623 -38.51663 -34.91678 -31.94929 -30.11101 -29.63357 -28.70142 -26.15337 -23.71596 -22.37167 -20.57391 -17.64610 -17.01800 -16.87104 -16.62785 -15.86711 -15.44120 -14.89014 -14.82605 -14.36631 -13.81297 -13.77420 -13.75502 -13.33898 -12.89681 -12.81593 -12.47558 -11.96241 -11.75820 -11.26787 -11.18917 -10.89184 -10.78186 -10.29232 -10.20332 -9.81897 -9.32924 -8.74905 -8.16042 -7.36854 -7.27179 -6.19090 -4.35739 1.28768 1.44264 1.49494 2.37562 3.21275 3.26212 3.29519 3.76706 4.28082 4.55655 4.58207 4.94112 4.94746 5.04414 5.05991 5.34547 5.43666 5.54473 5.76222 6.11146 6.22891 6.48497 6.58791 6.71643 7.15701 7.46596 7.64890 7.91140 8.51398 8.77608 8.96101 9.35877 10.80078 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.022954 B = 0.006897 C = 0.005983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.515608 B = 4058.904956 C = 4678.553120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 S -0.094 6.094 3 C -0.105 4.105 4 C -0.169 4.169 5 C 0.100 3.900 6 F -0.142 7.142 7 C -0.120 4.120 8 C -0.016 4.016 9 C 0.242 3.758 10 H 0.060 0.940 11 N -0.849 5.849 12 C -0.547 4.547 13 H 0.057 0.943 14 C 0.070 3.930 15 N -0.891 5.891 16 Si 0.901 3.099 17 H -0.276 1.276 18 H -0.285 1.285 19 H -0.274 1.274 20 C 0.109 3.891 21 F -0.120 7.120 22 H 0.107 0.893 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.135 0.865 26 H 0.147 0.853 27 H 0.361 0.639 28 H 0.313 0.687 29 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.621 -4.587 1.345 13.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.319 4.319 2 S 0.148 5.852 3 C -0.218 4.218 4 C -0.193 4.193 5 C 0.079 3.921 6 F -0.121 7.121 7 C -0.142 4.142 8 C -0.019 4.019 9 C 0.131 3.869 10 H 0.078 0.922 11 N -0.380 5.380 12 C -0.587 4.587 13 H 0.075 0.925 14 C -0.133 4.133 15 N -0.529 5.529 16 Si 0.728 3.272 17 H -0.201 1.201 18 H -0.210 1.210 19 H -0.200 1.200 20 C 0.083 3.917 21 F -0.098 7.098 22 H 0.126 0.874 23 H 0.103 0.897 24 H 0.103 0.897 25 H 0.153 0.847 26 H 0.165 0.835 27 H 0.178 0.822 28 H 0.123 0.877 29 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.104 -5.925 2.058 13.632 hybrid contribution -0.043 1.390 -1.947 2.392 sum -12.146 -4.535 0.111 12.966 Atomic orbital electron populations 1.23703 0.95556 1.06912 1.05692 1.85643 1.05292 1.01567 1.92733 1.21423 0.94517 0.97603 1.08269 1.20629 0.98706 0.91068 1.08932 1.17488 0.85278 0.85499 1.03858 1.91463 1.61001 1.65457 1.94148 1.20911 0.89210 1.01746 1.02286 1.20434 0.99436 0.89655 0.92368 1.17972 0.84310 0.90036 0.94535 0.92202 1.59558 1.18775 1.04099 1.55575 1.21631 0.97272 1.47270 0.92492 0.92487 1.24985 0.96260 0.94293 0.97774 1.69716 1.07431 1.44870 1.30906 0.86500 0.77770 0.78777 0.84130 1.20105 1.21045 1.19951 1.16916 0.82756 0.86646 1.05363 1.91509 1.59969 1.64831 1.93518 0.87416 0.89735 0.89742 0.84723 0.83532 0.82229 0.87743 0.92159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.15 101.05 0.92 -0.49 15 2 S -0.09 -1.35 22.17 -107.50 -2.38 -3.74 15 3 C -0.10 -1.82 6.11 -39.02 -0.24 -2.05 15 4 C -0.17 -2.64 9.34 -39.31 -0.37 -3.01 15 5 C 0.10 1.69 7.29 -39.45 -0.29 1.40 15 6 F -0.14 -2.27 17.26 2.25 0.04 -2.24 15 7 C -0.12 -2.28 9.25 -39.46 -0.36 -2.64 15 8 C -0.02 -0.33 5.00 -104.60 -0.52 -0.86 15 9 C 0.24 5.92 2.72 -70.02 -0.19 5.73 15 10 H 0.06 1.64 7.79 -51.93 -0.40 1.24 15 11 N -0.85 -19.43 8.78 -6.66 -0.06 -19.49 15 12 C -0.55 -14.48 8.71 -34.44 -0.30 -14.78 15 13 H 0.06 1.53 7.74 -52.48 -0.41 1.12 15 14 C 0.07 1.86 5.38 -17.82 -0.10 1.76 15 15 N -0.89 -24.04 11.54 55.43 0.64 -23.40 15 16 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 15 17 H -0.28 -6.28 7.11 56.52 0.40 -5.87 15 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 19 H -0.27 -6.36 7.11 56.52 0.40 -5.96 15 20 C 0.11 2.24 7.22 -39.24 -0.28 1.96 15 21 F -0.12 -2.65 16.05 2.25 0.04 -2.62 15 22 H 0.11 0.78 8.14 -51.92 -0.42 0.36 15 23 H 0.08 0.73 7.76 -51.92 -0.40 0.32 15 24 H 0.08 0.74 7.74 -51.92 -0.40 0.34 15 25 H 0.14 1.69 5.88 -52.49 -0.31 1.38 15 26 H 0.15 2.65 6.28 -52.49 -0.33 2.32 15 27 H 0.36 8.85 7.08 -39.29 -0.28 8.57 15 28 H 0.31 6.66 7.20 -39.29 -0.28 6.38 15 29 H 0.27 6.94 8.31 -40.82 -0.34 6.60 15 LS Contribution 270.73 15.07 4.08 4.08 Total: -1.00 -27.18 270.73 -6.77 -33.94 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -2.37 Total: 10.72 kcal Atomic # 6 Polarization: -11.25 SS G_CDS: -1.73 Total: -12.98 kcal Atomic # 7 Polarization: -43.47 SS G_CDS: 0.58 Total: -42.89 kcal Atomic # 9 Polarization: -4.93 SS G_CDS: 0.08 Total: -4.85 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: -1.35 SS G_CDS: -2.38 Total: -3.74 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -27.18 -6.77 -33.94 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260801183.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.398 kcal (2) G-P(sol) polarization free energy of solvation -27.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds