Wall clock time and date at job start Mon Mar 30 2020 07:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76207 * 102.99967 * 2 1 4 4 C 1.38877 * 120.06776 * 359.72291 * 3 2 1 5 5 C 1.38341 * 119.91194 * 179.74561 * 4 3 2 6 6 F 1.35097 * 119.96126 * 180.27614 * 5 4 3 7 7 C 1.38496 * 120.06759 * 0.55512 * 5 4 3 8 8 C 1.38296 * 120.14707 * 359.69805 * 7 5 4 9 9 C 1.50694 * 119.96129 * 180.02562 * 8 7 5 10 10 H 1.09000 * 109.47249 * 144.97925 * 9 8 7 11 11 N 1.46895 * 109.47089 * 24.98040 * 9 8 7 12 12 C 1.50700 * 109.47270 * 264.97746 * 9 8 7 13 13 H 1.08004 * 119.99872 * 0.02562 * 12 9 8 14 14 C 1.37872 * 119.99996 * 179.97438 * 12 9 8 15 15 N 1.31513 * 120.00369 * 0.02562 * 14 12 9 16 16 Si 1.86803 * 119.99981 * 180.02562 * 14 12 9 17 17 H 1.48498 * 109.47106 * 60.00133 * 16 14 12 18 18 H 1.48504 * 109.47039 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47063 * 300.00050 * 16 14 12 20 20 C 1.38256 * 120.07633 * 0.02656 * 8 7 5 21 21 F 1.35095 * 120.03098 * 180.02562 * 20 8 7 22 22 H 1.09001 * 109.47190 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47089 * 299.99885 * 1 2 3 24 24 H 1.09004 * 109.47568 * 59.99895 * 1 2 3 25 25 H 1.07994 * 120.04533 * 0.02562 * 4 3 2 26 26 H 1.07999 * 119.92768 * 179.72224 * 7 5 4 27 27 H 1.00899 * 111.00046 * 176.04558 * 11 9 8 28 28 H 1.00895 * 111.00372 * 299.99803 * 11 9 8 29 29 H 0.96999 * 120.00370 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 1.1958 2.6652 -0.0058 5 6 1.5106 4.0123 -0.0005 6 9 0.5245 4.9357 -0.0005 7 6 2.8357 4.4153 -0.0010 8 6 3.8481 3.4732 -0.0005 9 6 5.2885 3.9163 -0.0004 10 1 5.8831 3.2189 0.5897 11 7 5.3872 5.2603 0.5840 12 6 5.8054 3.9446 -1.4157 13 1 5.1557 3.6696 -2.2335 14 6 7.1074 4.3225 -1.6666 15 7 7.8984 4.6578 -0.6709 16 14 7.7479 4.3583 -3.4210 17 1 6.9374 5.3083 -4.2246 18 1 9.1674 4.7948 -3.4209 19 1 7.6485 2.9997 -4.0121 20 6 3.5403 2.1253 -0.0001 21 9 4.5301 1.2058 0.0009 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 0.1624 2.3515 -0.0099 26 1 3.0789 5.4675 -0.0013 27 1 6.3499 5.5541 0.6546 28 1 4.8442 5.9257 0.0545 29 1 8.8144 4.9233 -0.8474 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260801183.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:28 Heat of formation + Delta-G solvation = -85.748886 kcal Electronic energy + Delta-G solvation = -17040.313241 eV Core-core repulsion = 13917.660466 eV Total energy + Delta-G solvation = -3122.652775 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.054 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.96363 -49.85501 -40.00357 -36.72028 -33.80298 -31.60584 -31.04860 -29.67811 -28.06757 -25.37435 -23.84680 -22.22488 -19.08687 -18.74892 -18.37095 -18.34797 -17.13749 -16.88150 -16.69119 -16.33770 -15.93348 -15.28765 -15.00863 -14.91030 -14.65755 -14.53239 -14.34451 -13.76201 -13.39087 -13.25222 -13.03575 -12.86237 -12.80263 -12.38634 -12.06756 -11.68114 -11.30495 -10.85449 -10.64346 -9.67769 -9.28208 -8.48858 -8.19140 -6.44566 -0.14484 0.00734 0.36373 1.37118 1.38620 1.38754 1.46635 2.25296 2.39693 2.99421 3.16921 3.17749 3.66055 3.89128 4.03334 4.27084 4.29265 4.33151 4.52991 4.70873 4.85624 4.93693 5.00982 5.07671 5.51826 5.57378 5.74386 5.92715 6.54210 6.79577 7.03310 7.31115 8.77146 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.022954 B = 0.006897 C = 0.005983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.515608 B = 4058.904956 C = 4678.553120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 S -0.123 6.123 3 C -0.098 4.098 4 C -0.150 4.150 5 C 0.110 3.890 6 F -0.131 7.131 7 C -0.128 4.128 8 C -0.041 4.041 9 C 0.247 3.753 10 H 0.017 0.983 11 N -0.839 5.839 12 C -0.563 4.563 13 H 0.047 0.953 14 C 0.027 3.973 15 N -0.912 5.912 16 Si 0.961 3.039 17 H -0.268 1.268 18 H -0.278 1.278 19 H -0.277 1.277 20 C 0.076 3.924 21 F -0.139 7.139 22 H 0.135 0.865 23 H 0.100 0.900 24 H 0.098 0.902 25 H 0.177 0.823 26 H 0.149 0.851 27 H 0.350 0.650 28 H 0.322 0.678 29 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.304 -4.948 0.665 16.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.307 4.307 2 S 0.119 5.881 3 C -0.212 4.212 4 C -0.175 4.175 5 C 0.089 3.911 6 F -0.110 7.110 7 C -0.149 4.149 8 C -0.044 4.044 9 C 0.136 3.864 10 H 0.035 0.965 11 N -0.369 5.369 12 C -0.602 4.602 13 H 0.065 0.935 14 C -0.174 4.174 15 N -0.551 5.551 16 Si 0.786 3.214 17 H -0.193 1.193 18 H -0.203 1.203 19 H -0.203 1.203 20 C 0.051 3.949 21 F -0.118 7.118 22 H 0.153 0.847 23 H 0.119 0.881 24 H 0.117 0.883 25 H 0.194 0.806 26 H 0.167 0.833 27 H 0.166 0.834 28 H 0.133 0.867 29 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.808 -6.290 1.382 16.148 hybrid contribution 0.642 1.428 -1.692 2.306 sum -14.166 -4.862 -0.311 14.980 Atomic orbital electron populations 1.23909 0.90433 1.09209 1.07144 1.85836 1.10836 0.99303 1.92116 1.21603 0.93329 0.99822 1.06415 1.21038 1.00198 0.89948 1.06276 1.17412 0.84582 0.86253 1.02869 1.91495 1.60277 1.65273 1.93944 1.20891 0.89882 1.01374 1.02779 1.20149 0.98201 0.90811 0.95236 1.17657 0.86153 0.89653 0.92893 0.96475 1.59497 1.18066 1.03830 1.55497 1.21839 0.97642 1.47431 0.93278 0.93495 1.25712 0.96426 0.93957 1.01345 1.69813 1.07613 1.45184 1.32483 0.85570 0.77463 0.78534 0.79858 1.19309 1.20327 1.20270 1.17223 0.83974 0.86214 1.07512 1.91446 1.61053 1.65353 1.93947 0.84715 0.88123 0.88304 0.80606 0.83297 0.83419 0.86688 0.92011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.15 113.37 1.04 -0.92 15 2 S -0.12 -3.29 22.17 -56.49 -1.25 -4.55 15 3 C -0.10 -3.27 6.11 22.64 0.14 -3.13 15 4 C -0.15 -4.21 9.34 22.45 0.21 -4.00 15 5 C 0.11 3.47 7.29 22.36 0.16 3.63 15 6 F -0.13 -3.78 17.26 44.97 0.78 -3.01 15 7 C -0.13 -4.79 9.25 22.35 0.21 -4.58 15 8 C -0.04 -1.80 5.00 -19.85 -0.10 -1.90 15 9 C 0.25 12.67 2.72 43.42 0.12 12.78 15 10 H 0.02 1.02 7.79 -2.39 -0.02 1.00 15 11 N -0.84 -39.68 8.78 -174.97 -1.54 -41.22 15 12 C -0.56 -30.74 8.71 25.60 0.22 -30.52 15 13 H 0.05 2.59 7.74 -2.91 -0.02 2.57 15 14 C 0.03 1.44 5.38 84.65 0.46 1.89 15 15 N -0.91 -50.42 11.54 21.45 0.25 -50.18 15 16 Si 0.96 42.97 29.54 68.60 2.03 44.99 15 17 H -0.27 -11.60 7.11 99.48 0.71 -10.89 15 18 H -0.28 -12.05 7.11 99.48 0.71 -11.34 15 19 H -0.28 -12.45 7.11 99.48 0.71 -11.74 15 20 C 0.08 3.21 7.22 22.49 0.16 3.37 15 21 F -0.14 -6.48 16.05 44.97 0.72 -5.76 15 22 H 0.13 1.27 8.14 -2.39 -0.02 1.25 15 23 H 0.10 1.18 7.76 -2.39 -0.02 1.16 15 24 H 0.10 1.19 7.74 -2.39 -0.02 1.18 15 25 H 0.18 3.44 5.88 -2.91 -0.02 3.42 15 26 H 0.15 5.35 6.28 -2.91 -0.02 5.33 15 27 H 0.35 17.81 7.08 -89.69 -0.63 17.18 15 28 H 0.32 14.03 7.20 -89.70 -0.65 13.38 15 29 H 0.27 14.20 8.31 -92.71 -0.77 13.43 15 Total: -1.00 -60.69 270.73 3.53 -57.16 By element: Atomic # 1 Polarization: 25.98 SS G_CDS: -0.06 Total: 25.92 kcal Atomic # 6 Polarization: -25.98 SS G_CDS: 2.61 Total: -23.37 kcal Atomic # 7 Polarization: -90.10 SS G_CDS: -1.29 Total: -91.39 kcal Atomic # 9 Polarization: -10.26 SS G_CDS: 1.50 Total: -8.76 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 44.99 kcal Atomic # 16 Polarization: -3.29 SS G_CDS: -1.25 Total: -4.55 kcal Total: -60.69 3.53 -57.16 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260801183.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.593 kcal (2) G-P(sol) polarization free energy of solvation -60.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds