Wall clock time and date at job start Mon Mar 30 2020 07:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99886 * 2 1 4 4 H 1.48505 * 109.46695 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47230 * 299.99670 * 3 2 1 6 6 H 1.48500 * 109.47143 * 60.00538 * 3 2 1 7 7 C 1.37871 * 119.99951 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00315 * 186.08225 * 7 2 1 9 9 C 1.50701 * 119.99813 * 6.08817 * 7 2 1 10 10 H 1.08996 * 109.47583 * 335.70804 * 9 7 2 11 11 C 1.50704 * 109.47276 * 95.70744 * 9 7 2 12 12 C 1.36218 * 119.78703 * 59.97914 * 11 9 7 13 13 C 1.38742 * 120.77717 * 179.97438 * 12 11 9 14 14 C 1.37695 * 120.07079 * 0.03777 * 13 12 11 15 15 C 1.39290 * 119.95236 * 359.97438 * 14 13 12 16 16 S 1.76079 * 131.73808 * 180.02562 * 15 14 13 17 17 C 1.70648 * 90.82675 * 179.97438 * 16 15 14 18 18 N 1.27927 * 111.53339 * 359.97438 * 17 16 15 19 19 C 1.34661 * 117.84944 * 0.02562 * 18 17 16 20 20 C 1.53003 * 109.47458 * 215.70517 * 9 7 2 21 21 C 1.53001 * 117.49875 * 133.99988 * 20 9 7 22 22 C 1.53003 * 60.00096 * 252.51491 * 21 20 9 23 23 H 0.97003 * 119.99399 * 0.02562 * 1 2 3 24 24 H 1.07996 * 119.60853 * 359.97438 * 12 11 9 25 25 H 1.08010 * 119.96481 * 180.02562 * 13 12 11 26 26 H 1.07998 * 120.02408 * 179.97438 * 14 13 12 27 27 H 1.08004 * 124.22889 * 179.72990 * 17 16 15 28 28 H 1.09000 * 115.55119 * 279.71837 * 20 9 7 29 29 H 1.09001 * 117.49750 * 0.02562 * 21 20 9 30 30 H 1.09006 * 117.49435 * 145.02618 * 21 20 9 31 31 H 1.08994 * 117.49819 * 252.50878 * 22 21 20 32 32 H 1.09003 * 117.51296 * 107.48512 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0799 -1.1967 0.0996 9 6 1.2573 -2.4955 -0.1373 10 1 0.2295 -2.3619 0.1999 11 6 1.2601 -2.9258 -1.5816 12 6 2.4430 -3.1531 -2.2177 13 6 2.4696 -3.5504 -3.5467 14 6 1.2919 -3.7192 -4.2400 15 6 0.0728 -3.4911 -3.6060 16 16 -1.5874 -3.6095 -4.1804 17 6 -2.1766 -3.1352 -2.6508 18 7 -1.2225 -2.9203 -1.8261 19 6 0.0390 -3.0911 -2.2652 20 6 1.9386 -3.5676 0.7155 21 6 1.0441 -4.4486 1.5900 22 6 1.9257 -3.3763 2.2335 23 1 -0.4849 0.8401 -0.0004 24 1 3.3711 -3.0224 -1.6811 25 1 3.4150 -3.7274 -4.0381 26 1 1.3135 -4.0281 -5.2747 27 1 -3.2239 -3.0259 -2.4103 28 1 2.8222 -4.0284 0.2739 29 1 -0.0297 -4.2646 1.5574 30 1 1.3391 -5.4894 1.7236 31 1 2.8005 -3.7117 2.7905 32 1 1.4321 -2.4866 2.6246 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260817416.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:59 Heat of formation + Delta-G solvation = 76.052564 kcal Electronic energy + Delta-G solvation = -16856.553492 eV Core-core repulsion = 14295.146484 eV Total energy + Delta-G solvation = -2561.407008 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.75961 -36.97335 -35.89463 -32.99437 -31.08807 -29.22697 -27.10481 -24.29348 -23.72601 -21.79048 -21.41902 -20.67166 -19.18630 -17.47299 -16.45258 -15.73692 -15.19946 -14.74954 -14.68125 -14.22243 -14.02752 -13.20914 -12.98214 -12.59942 -12.11346 -11.78078 -11.37056 -11.28850 -11.07007 -10.93496 -10.69191 -10.56374 -10.31346 -10.01243 -9.55963 -9.22273 -9.06706 -8.89166 -8.65377 -8.44918 -8.05090 -7.25402 -6.03173 -4.07825 1.11298 1.85764 1.94053 2.28945 3.08927 3.27371 3.35971 3.38866 4.36047 4.50501 4.74717 4.82623 5.19806 5.33367 5.56299 5.64904 5.72876 5.88519 5.94917 5.99445 6.16063 6.24048 6.36633 6.50667 6.75804 6.80623 6.85162 6.89395 7.04981 7.18232 7.34540 7.55061 7.82014 7.97180 8.30937 8.38264 9.00393 9.53236 11.01923 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.016887 B = 0.008604 C = 0.007634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.637876 B = 3253.458559 C = 3666.951222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.068 3.932 3 Si 0.886 3.114 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.504 4.504 8 H 0.059 0.941 9 C 0.085 3.915 10 H 0.088 0.912 11 C 0.049 3.951 12 C -0.127 4.127 13 C -0.092 4.092 14 C -0.118 4.118 15 C -0.165 4.165 16 S 0.022 5.978 17 C 0.046 3.954 18 N -0.413 5.413 19 C 0.073 3.927 20 C -0.120 4.120 21 C -0.200 4.200 22 C -0.168 4.168 23 H 0.260 0.740 24 H 0.128 0.872 25 H 0.122 0.878 26 H 0.117 0.883 27 H 0.193 0.807 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.154 -7.559 -5.615 9.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.714 3.286 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.541 4.541 8 H 0.077 0.923 9 C 0.066 3.934 10 H 0.106 0.894 11 C 0.046 3.954 12 C -0.148 4.148 13 C -0.113 4.113 14 C -0.141 4.141 15 C -0.283 4.283 16 S 0.273 5.727 17 C -0.261 4.261 18 N -0.122 5.122 19 C -0.046 4.046 20 C -0.138 4.138 21 C -0.237 4.237 22 C -0.205 4.205 23 H 0.070 0.930 24 H 0.146 0.854 25 H 0.140 0.860 26 H 0.135 0.865 27 H 0.209 0.791 28 H 0.101 0.899 29 H 0.106 0.894 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.026 -7.498 -5.921 9.609 hybrid contribution 1.040 1.249 0.304 1.654 sum 0.015 -6.249 -5.616 8.402 Atomic orbital electron populations 1.70001 1.05718 1.26445 1.48175 1.25025 0.94846 0.99171 0.94563 0.86629 0.80389 0.84034 0.77575 1.19558 1.21091 1.20981 1.20901 0.93349 0.89362 1.50519 0.92308 1.17817 1.00242 0.90935 0.84421 0.89379 1.20283 0.88088 0.87293 0.99765 1.20539 0.98349 1.01676 0.94207 1.21062 0.96876 0.98608 0.94773 1.19989 0.89758 1.05183 0.99188 1.23738 0.97118 1.09110 0.98321 1.83499 0.98705 1.71602 1.18866 1.27912 1.02965 1.03471 0.91736 1.66074 0.98792 1.12570 1.34771 1.19142 0.91437 1.03804 0.90213 1.22471 0.99407 0.99436 0.92505 1.22979 0.97974 0.94967 1.07776 1.22691 1.00975 1.00206 0.96591 0.92966 0.85368 0.85958 0.86520 0.79064 0.89921 0.89436 0.90673 0.90590 0.88609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.81 12.76 55.43 0.71 -24.10 16 2 C 0.07 1.86 5.45 -17.82 -0.10 1.76 16 3 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.50 -13.24 7.67 -34.44 -0.26 -13.51 16 8 H 0.06 1.52 7.82 -52.49 -0.41 1.11 16 9 C 0.08 2.06 2.24 -92.92 -0.21 1.85 16 10 H 0.09 2.44 6.40 -51.93 -0.33 2.11 16 11 C 0.05 1.12 4.81 -104.33 -0.50 0.62 16 12 C -0.13 -2.50 8.53 -40.12 -0.34 -2.85 16 13 C -0.09 -1.55 10.04 -39.59 -0.40 -1.95 16 14 C -0.12 -2.02 10.07 -39.39 -0.40 -2.42 16 15 C -0.16 -3.21 6.56 -38.54 -0.25 -3.46 16 16 S 0.02 0.36 23.17 -107.50 -2.49 -2.13 16 17 C 0.05 0.81 12.10 51.14 0.62 1.43 16 18 N -0.41 -9.19 10.03 -12.96 -0.13 -9.32 16 19 C 0.07 1.64 6.76 -84.96 -0.57 1.06 16 20 C -0.12 -2.51 4.92 -90.62 -0.45 -2.96 16 21 C -0.20 -3.81 10.18 -26.73 -0.27 -4.08 16 22 C -0.17 -3.28 10.01 -26.73 -0.27 -3.55 16 23 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 24 H 0.13 2.39 7.70 -52.49 -0.40 1.99 16 25 H 0.12 1.61 8.06 -52.48 -0.42 1.18 16 26 H 0.12 1.65 8.06 -52.49 -0.42 1.22 16 27 H 0.19 2.61 8.06 -52.48 -0.42 2.18 16 28 H 0.08 1.62 7.38 -51.93 -0.38 1.23 16 29 H 0.09 1.76 8.08 -51.93 -0.42 1.34 16 30 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.10 2.05 8.14 -51.93 -0.42 1.63 16 LS Contribution 290.44 15.07 4.38 4.38 Total: -1.00 -29.72 290.44 -9.58 -39.30 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -3.62 Total: 3.83 kcal Atomic # 6 Polarization: -24.64 SS G_CDS: -3.40 Total: -28.04 kcal Atomic # 7 Polarization: -34.00 SS G_CDS: 0.58 Total: -33.43 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 0.36 SS G_CDS: -2.49 Total: -2.13 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -29.72 -9.58 -39.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260817416.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.355 kcal (2) G-P(sol) polarization free energy of solvation -29.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds