Wall clock time and date at job start Mon Mar 30 2020 07:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.76200 * 103.00141 * 2 1 4 4 C 1.39065 * 120.08973 * 270.02014 * 3 2 1 5 5 F 1.35105 * 120.04575 * 0.02562 * 4 3 2 6 6 C 1.38283 * 119.91128 * 179.97438 * 4 3 2 7 7 C 1.38320 * 120.09007 * 359.74631 * 6 4 3 8 8 C 1.38275 * 120.17754 * 0.50834 * 7 6 4 9 9 C 1.50699 * 119.94951 * 179.76632 * 8 7 6 10 10 H 1.09000 * 109.46916 * 144.72717 * 9 8 7 11 11 N 1.46899 * 109.47571 * 24.72518 * 9 8 7 12 12 C 1.50706 * 109.46824 * 264.72050 * 9 8 7 13 13 H 1.07999 * 120.00193 * 0.02562 * 12 9 8 14 14 C 1.37879 * 119.99398 * 180.02562 * 12 9 8 15 15 N 1.31514 * 119.99350 * 180.02562 * 14 12 9 16 16 Si 1.86798 * 120.00608 * 0.02562 * 14 12 9 17 17 H 1.48493 * 109.47326 * 270.00340 * 16 14 12 18 18 H 1.48506 * 109.46545 * 30.00090 * 16 14 12 19 19 H 1.48498 * 109.47210 * 149.99801 * 16 14 12 20 20 C 1.38332 * 120.08864 * 359.49060 * 8 7 6 21 21 F 1.35099 * 120.04165 * 180.27177 * 20 8 7 22 22 H 1.09000 * 109.47330 * 300.00236 * 1 2 3 23 23 H 1.09007 * 109.46926 * 59.99975 * 1 2 3 24 24 H 1.08998 * 109.47264 * 179.97438 * 1 2 3 25 25 H 1.07997 * 119.96077 * 180.02562 * 6 4 3 26 26 H 1.08003 * 119.91133 * 180.25696 * 7 6 4 27 27 H 1.00895 * 110.99738 * 176.04461 * 11 9 8 28 28 H 1.00899 * 110.99492 * 299.99890 * 11 9 8 29 29 H 0.97005 * 119.99661 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 2.3669 2.3963 -1.2032 5 9 2.2146 1.7410 -2.3749 6 6 2.6774 3.7438 -1.1989 7 6 2.8273 4.4170 0.0000 8 6 2.6778 3.7440 1.1986 9 6 2.8474 4.4814 2.5018 10 1 2.1503 4.0822 3.2386 11 7 2.5762 5.9102 2.2950 12 6 4.2592 4.3048 2.9988 13 1 4.9632 3.7177 2.4278 14 6 4.6519 4.8929 4.1824 15 7 5.8840 4.7392 4.6159 16 14 3.4340 5.9078 5.1704 17 1 3.5006 7.3251 4.7325 18 1 2.0613 5.3856 4.9504 19 1 3.7718 5.8192 6.6138 20 6 2.3671 2.3960 1.2029 21 9 2.2158 1.7406 2.3745 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 2.7987 4.2723 -2.1329 26 1 3.0658 5.4704 0.0000 27 1 2.6203 6.4165 3.1666 28 1 3.2099 6.3039 1.6156 29 1 6.1604 5.1532 5.4484 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260829757.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:34 Heat of formation + Delta-G solvation = -74.355264 kcal Electronic energy + Delta-G solvation = -17177.572154 eV Core-core repulsion = 14055.413444 eV Total energy + Delta-G solvation = -3122.158711 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.054 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -50.06625 -50.00666 -40.12000 -36.81385 -34.06234 -31.95376 -31.13151 -29.77059 -28.20459 -25.07043 -24.23911 -22.17148 -19.49679 -19.19352 -18.48278 -18.06533 -17.36612 -17.09166 -16.56123 -16.38499 -16.24093 -15.57171 -15.40211 -15.05200 -14.47032 -14.45323 -14.29449 -13.99309 -13.75243 -13.55320 -13.07422 -12.88845 -12.78672 -12.33902 -12.04777 -11.71428 -11.50505 -10.94452 -9.99089 -9.82350 -9.35695 -8.91132 -8.43208 -6.53594 -0.38376 -0.03390 0.49128 1.21826 1.32435 1.40468 1.52085 2.18739 2.32397 2.78134 2.89198 3.33363 3.54757 3.75335 4.02021 4.08659 4.22846 4.27341 4.41893 4.62537 4.78288 4.85619 4.92291 5.04010 5.28439 5.31716 5.66338 5.96328 6.26776 6.50096 6.65008 7.13223 8.72994 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.029590 B = 0.006804 C = 0.006214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.035645 B = 4114.528620 C = 4504.746304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 S -0.161 6.161 3 C -0.208 4.208 4 C 0.147 3.853 5 F -0.119 7.119 6 C -0.151 4.151 7 C -0.028 4.028 8 C -0.099 4.099 9 C 0.220 3.780 10 H 0.040 0.960 11 N -0.833 5.833 12 C -0.551 4.551 13 H 0.031 0.969 14 C 0.021 3.979 15 N -0.934 5.934 16 Si 0.936 3.064 17 H -0.244 1.244 18 H -0.250 1.250 19 H -0.293 1.293 20 C 0.145 3.855 21 F -0.129 7.129 22 H 0.077 0.923 23 H 0.089 0.911 24 H 0.131 0.869 25 H 0.184 0.816 26 H 0.168 0.832 27 H 0.321 0.679 28 H 0.344 0.656 29 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.323 -1.747 -11.254 16.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 S 0.070 5.930 3 C -0.321 4.321 4 C 0.124 3.876 5 F -0.097 7.097 6 C -0.171 4.171 7 C -0.047 4.047 8 C -0.103 4.103 9 C 0.110 3.890 10 H 0.058 0.942 11 N -0.367 5.367 12 C -0.590 4.590 13 H 0.049 0.951 14 C -0.179 4.179 15 N -0.573 5.573 16 Si 0.761 3.239 17 H -0.169 1.169 18 H -0.174 1.174 19 H -0.220 1.220 20 C 0.123 3.877 21 F -0.108 7.108 22 H 0.096 0.904 23 H 0.108 0.892 24 H 0.149 0.851 25 H 0.201 0.799 26 H 0.186 0.814 27 H 0.137 0.863 28 H 0.158 0.842 29 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.282 -2.936 -11.370 16.284 hybrid contribution 0.351 1.055 1.412 1.798 sum -10.931 -1.881 -9.957 14.905 Atomic orbital electron populations 1.23685 0.91425 1.08295 1.05752 1.85451 1.10278 0.99814 1.97491 1.21700 1.16855 1.00013 0.93535 1.17410 0.99524 0.90769 0.79868 1.91533 1.92701 1.81286 1.44216 1.21489 1.03037 0.91487 1.01072 1.21143 0.92902 1.01579 0.89030 1.20168 1.00081 0.91822 0.98179 1.18062 0.93674 0.87072 0.90213 0.94192 1.59664 1.59187 1.03370 1.14474 1.21698 0.96334 1.33386 1.07630 0.95099 1.25881 0.96853 0.97347 0.97790 1.70039 1.19187 1.45313 1.22720 0.85982 0.79933 0.80326 0.77674 1.16875 1.17429 1.21999 1.17492 0.99457 0.90104 0.80681 1.91492 1.92519 1.80978 1.45766 0.90433 0.89233 0.85067 0.79856 0.81432 0.86265 0.84185 0.92043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.70 10.72 113.37 1.22 -1.49 15 2 S -0.16 -5.02 21.53 -56.49 -1.22 -6.23 15 3 C -0.21 -7.24 5.71 22.66 0.13 -7.11 15 4 C 0.15 4.40 7.27 22.48 0.16 4.57 15 5 F -0.12 -3.34 16.76 44.97 0.75 -2.59 15 6 C -0.15 -3.92 10.02 22.30 0.22 -3.70 15 7 C -0.03 -0.87 9.27 22.30 0.21 -0.66 15 8 C -0.10 -3.94 5.00 -19.83 -0.10 -4.03 15 9 C 0.22 9.91 2.25 43.42 0.10 10.01 15 10 H 0.04 1.94 6.84 -2.39 -0.02 1.92 15 11 N -0.83 -31.87 8.74 -174.95 -1.53 -33.40 15 12 C -0.55 -30.23 9.29 25.60 0.24 -30.00 15 13 H 0.03 1.93 7.98 -2.91 -0.02 1.90 15 14 C 0.02 1.18 5.47 84.66 0.46 1.64 15 15 N -0.93 -56.30 13.96 21.45 0.30 -56.00 15 16 Si 0.94 41.33 24.61 68.60 1.69 43.01 15 17 H -0.24 -9.61 7.01 99.48 0.70 -8.91 15 18 H -0.25 -10.63 6.54 99.48 0.65 -9.98 15 19 H -0.29 -13.13 7.11 99.48 0.71 -12.42 15 20 C 0.15 5.83 7.22 22.48 0.16 5.99 15 21 F -0.13 -5.69 16.05 44.97 0.72 -4.96 15 22 H 0.08 1.75 8.14 -2.39 -0.02 1.73 15 23 H 0.09 1.75 8.14 -2.39 -0.02 1.73 15 24 H 0.13 2.13 8.14 -2.39 -0.02 2.11 15 25 H 0.18 3.20 8.06 -2.91 -0.02 3.18 15 26 H 0.17 4.35 6.27 -2.91 -0.02 4.34 15 27 H 0.32 12.52 4.30 -89.70 -0.39 12.14 15 28 H 0.34 11.79 7.20 -89.69 -0.65 11.15 15 29 H 0.27 15.19 8.31 -92.70 -0.77 14.42 15 Total: -1.00 -65.26 267.90 3.63 -61.63 By element: Atomic # 1 Polarization: 23.19 SS G_CDS: 0.11 Total: 23.31 kcal Atomic # 6 Polarization: -27.58 SS G_CDS: 2.80 Total: -24.78 kcal Atomic # 7 Polarization: -88.16 SS G_CDS: -1.23 Total: -89.39 kcal Atomic # 9 Polarization: -9.02 SS G_CDS: 1.48 Total: -7.55 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 1.69 Total: 43.01 kcal Atomic # 16 Polarization: -5.02 SS G_CDS: -1.22 Total: -6.23 kcal Total: -65.26 3.63 -61.63 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260829757.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.728 kcal (2) G-P(sol) polarization free energy of solvation -65.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds