Wall clock time and date at job start Mon Mar 30 2020 06:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 11 11 N 1.46900 * 109.47676 * 59.99745 * 9 7 2 12 12 C 1.50707 * 109.47007 * 180.02562 * 9 7 2 13 13 C 1.38300 * 119.91548 * 279.72452 * 12 9 7 14 14 C 1.38088 * 120.07759 * 179.76878 * 13 12 9 15 15 C 1.38976 * 119.91797 * 0.50026 * 14 13 12 16 16 S 1.76191 * 120.07732 * 179.72821 * 15 14 13 17 17 C 1.81397 * 103.00404 * 0.02562 * 16 15 14 18 18 F 1.39899 * 109.46896 * 299.99908 * 17 16 15 19 19 F 1.39898 * 109.46751 * 59.99863 * 17 16 15 20 20 C 1.38977 * 119.83711 * 359.75135 * 15 14 13 21 21 C 1.38072 * 119.92158 * 359.97438 * 20 15 14 22 22 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 23 23 H 1.00899 * 110.99700 * 59.99648 * 11 9 7 24 24 H 1.00893 * 110.99909 * 183.95320 * 11 9 7 25 25 H 1.08002 * 119.96398 * 359.97438 * 13 12 9 26 26 H 1.07997 * 120.04093 * 180.25270 * 14 13 12 27 27 H 1.08998 * 109.47338 * 180.02562 * 17 16 15 28 28 H 1.08002 * 120.03643 * 179.97438 * 20 15 14 29 29 H 1.08005 * 119.95678 * 180.02562 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.8752 -0.6797 -0.8895 11 7 4.0008 -0.5023 1.2001 12 6 4.0139 -2.6150 -0.0013 13 6 4.0525 -3.3341 1.1794 14 6 4.5077 -4.6377 1.1811 15 6 4.9371 -5.2236 -0.0037 16 16 5.5254 -6.8844 -0.0050 17 6 5.3717 -7.3733 1.7351 18 9 6.1535 -6.5265 2.5281 19 9 4.0330 -7.2774 2.1298 20 6 4.9018 -4.4961 -1.1873 21 6 4.4400 -3.1949 -1.1824 22 1 -0.4850 0.8401 0.0004 23 1 3.6770 -0.9604 2.0387 24 1 5.0073 -0.4323 1.1919 25 1 3.7231 -2.8766 2.1006 26 1 4.5337 -5.2001 2.1028 27 1 5.7136 -8.4012 1.8553 28 1 5.2351 -4.9480 -2.1098 29 1 4.4119 -2.6291 -2.1020 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260831131.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:50 Heat of formation + Delta-G solvation = -65.237579 kcal Electronic energy + Delta-G solvation = -16764.004431 eV Core-core repulsion = 13642.241093 eV Total energy + Delta-G solvation = -3121.763338 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.054 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.48123 -47.47622 -38.97909 -34.92500 -31.93210 -30.79551 -29.71269 -27.22151 -26.38810 -23.19041 -22.36672 -20.09762 -18.76535 -18.08837 -17.67219 -16.90326 -16.69296 -15.29758 -15.10801 -14.44493 -14.36921 -14.26547 -13.91360 -13.80202 -13.45205 -13.00840 -12.78167 -12.66556 -12.35662 -11.77806 -11.31345 -10.87823 -10.72524 -10.59212 -10.36477 -9.89075 -9.52104 -9.17005 -8.66043 -8.57647 -7.79807 -7.47132 -6.04986 -4.16438 0.63966 1.52495 1.70904 1.84323 3.47478 3.54253 3.58549 3.71133 4.04936 4.08135 4.18038 4.61103 5.08788 5.13644 5.21602 5.55822 5.71749 5.80037 5.88005 6.11371 6.24883 6.48278 6.68639 6.73658 7.16197 7.24937 7.53973 8.07648 8.25309 8.61645 8.94654 9.57068 11.04196 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.037764 B = 0.005154 C = 0.005061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.260880 B = 5431.129069 C = 5531.544438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.082 3.918 3 Si 0.938 3.062 4 H -0.280 1.280 5 H -0.274 1.274 6 H -0.318 1.318 7 C -0.519 4.519 8 H 0.072 0.928 9 C 0.213 3.787 10 H 0.053 0.947 11 N -0.840 5.840 12 C -0.054 4.054 13 C -0.101 4.101 14 C -0.117 4.117 15 C -0.118 4.118 16 S -0.117 6.117 17 C 0.274 3.726 18 F -0.182 7.182 19 F -0.180 7.180 20 C -0.088 4.088 21 C -0.106 4.106 22 H 0.264 0.736 23 H 0.335 0.665 24 H 0.312 0.688 25 H 0.125 0.875 26 H 0.119 0.881 27 H 0.153 0.847 28 H 0.122 0.878 29 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.009 -13.545 1.916 18.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.122 4.122 3 Si 0.770 3.230 4 H -0.206 1.206 5 H -0.200 1.200 6 H -0.248 1.248 7 C -0.558 4.558 8 H 0.090 0.910 9 C 0.104 3.896 10 H 0.071 0.929 11 N -0.370 5.370 12 C -0.057 4.057 13 C -0.121 4.121 14 C -0.140 4.140 15 C -0.229 4.229 16 S 0.119 5.881 17 C 0.111 3.889 18 F -0.164 7.164 19 F -0.161 7.161 20 C -0.111 4.111 21 C -0.126 4.126 22 H 0.074 0.926 23 H 0.149 0.851 24 H 0.123 0.877 25 H 0.143 0.857 26 H 0.137 0.863 27 H 0.169 0.831 28 H 0.140 0.860 29 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 12.838 -13.555 0.864 18.690 hybrid contribution 0.230 0.632 1.354 1.512 sum 13.068 -12.923 2.219 18.512 Atomic orbital electron populations 1.69958 1.06815 1.27459 1.49143 1.25032 0.94618 1.00123 0.92452 0.85841 0.78356 0.80688 0.78083 1.20615 1.19958 1.24796 1.20722 0.87013 0.94669 1.53354 0.91021 1.18788 0.96593 0.83623 0.90593 0.92907 1.59374 1.13088 1.58400 1.06121 1.21420 0.92178 0.99857 0.92293 1.20875 0.99117 0.93236 0.98901 1.21234 1.00257 0.96509 0.95984 1.21145 1.08829 0.95250 0.97712 1.85982 1.82064 1.13044 1.07028 1.24231 0.76226 0.97380 0.91014 1.93110 1.73959 1.73436 1.75884 1.93131 1.34178 1.97043 1.91791 1.20627 1.00496 0.94397 0.95578 1.21036 0.98861 0.94168 0.98571 0.92614 0.85084 0.87666 0.85678 0.86294 0.83060 0.86010 0.85358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.39 13.96 55.43 0.77 -26.62 15 2 C 0.08 2.36 5.47 -17.82 -0.10 2.26 15 3 Si 0.94 23.52 26.03 -169.99 -4.42 19.10 15 4 H -0.28 -7.04 7.11 56.52 0.40 -6.63 15 5 H -0.27 -6.63 6.54 56.52 0.37 -6.26 15 6 H -0.32 -8.09 7.11 56.52 0.40 -7.69 15 7 C -0.52 -14.28 9.29 -34.44 -0.32 -14.60 15 8 H 0.07 2.18 7.98 -52.49 -0.42 1.77 15 9 C 0.21 4.78 2.34 -70.01 -0.16 4.62 15 10 H 0.05 1.22 7.05 -51.93 -0.37 0.85 15 11 N -0.84 -17.13 6.59 -6.65 -0.04 -17.17 15 12 C -0.05 -1.06 4.89 -104.57 -0.51 -1.57 15 13 C -0.10 -1.87 9.28 -39.61 -0.37 -2.24 15 14 C -0.12 -1.98 8.69 -39.36 -0.34 -2.32 15 15 C -0.12 -1.87 6.11 -39.03 -0.24 -2.11 15 16 S -0.12 -1.44 22.16 -107.50 -2.38 -3.82 15 17 C 0.27 2.83 5.37 101.05 0.54 3.37 15 18 F -0.18 -2.18 15.64 2.25 0.04 -2.14 15 19 F -0.18 -2.28 15.65 2.25 0.04 -2.24 15 20 C -0.09 -1.40 9.79 -39.37 -0.39 -1.79 15 21 C -0.11 -1.88 9.66 -39.62 -0.38 -2.26 15 22 H 0.26 7.61 8.31 -40.82 -0.34 7.27 15 23 H 0.33 6.54 7.33 -39.29 -0.29 6.26 15 24 H 0.31 5.46 9.06 -39.30 -0.36 5.10 15 25 H 0.13 2.23 6.65 -52.49 -0.35 1.88 15 26 H 0.12 1.87 4.55 -52.49 -0.24 1.64 15 27 H 0.15 0.85 8.14 -51.92 -0.42 0.43 15 28 H 0.12 1.64 8.06 -52.49 -0.42 1.21 15 29 H 0.13 2.10 8.03 -52.48 -0.42 1.67 15 LS Contribution 266.84 15.07 4.02 4.02 Total: -1.00 -31.33 266.84 -6.70 -38.03 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -2.45 Total: 7.50 kcal Atomic # 6 Polarization: -14.38 SS G_CDS: -2.27 Total: -16.64 kcal Atomic # 7 Polarization: -44.52 SS G_CDS: 0.73 Total: -43.79 kcal Atomic # 9 Polarization: -4.46 SS G_CDS: 0.07 Total: -4.39 kcal Atomic # 14 Polarization: 23.52 SS G_CDS: -4.42 Total: 19.10 kcal Atomic # 16 Polarization: -1.44 SS G_CDS: -2.38 Total: -3.82 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -31.33 -6.70 -38.03 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260831131.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.205 kcal (2) G-P(sol) polarization free energy of solvation -31.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds