Wall clock time and date at job start Mon Mar 30 2020 06:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 11 11 N 1.46900 * 109.47676 * 59.99745 * 9 7 2 12 12 C 1.50707 * 109.47007 * 180.02562 * 9 7 2 13 13 C 1.38300 * 119.91548 * 279.72452 * 12 9 7 14 14 C 1.38088 * 120.07759 * 179.76878 * 13 12 9 15 15 C 1.38976 * 119.91797 * 0.50026 * 14 13 12 16 16 S 1.76191 * 120.07732 * 179.72821 * 15 14 13 17 17 C 1.81397 * 103.00404 * 0.02562 * 16 15 14 18 18 F 1.39899 * 109.46896 * 299.99908 * 17 16 15 19 19 F 1.39898 * 109.46751 * 59.99863 * 17 16 15 20 20 C 1.38977 * 119.83711 * 359.75135 * 15 14 13 21 21 C 1.38072 * 119.92158 * 359.97438 * 20 15 14 22 22 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 23 23 H 1.00899 * 110.99700 * 59.99648 * 11 9 7 24 24 H 1.00893 * 110.99909 * 183.95320 * 11 9 7 25 25 H 1.08002 * 119.96398 * 359.97438 * 13 12 9 26 26 H 1.07997 * 120.04093 * 180.25270 * 14 13 12 27 27 H 1.08998 * 109.47338 * 180.02562 * 17 16 15 28 28 H 1.08002 * 120.03643 * 179.97438 * 20 15 14 29 29 H 1.08005 * 119.95678 * 180.02562 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.8752 -0.6797 -0.8895 11 7 4.0008 -0.5023 1.2001 12 6 4.0139 -2.6150 -0.0013 13 6 4.0525 -3.3341 1.1794 14 6 4.5077 -4.6377 1.1811 15 6 4.9371 -5.2236 -0.0037 16 16 5.5254 -6.8844 -0.0050 17 6 5.3717 -7.3733 1.7351 18 9 6.1535 -6.5265 2.5281 19 9 4.0330 -7.2774 2.1298 20 6 4.9018 -4.4961 -1.1873 21 6 4.4400 -3.1949 -1.1824 22 1 -0.4850 0.8401 0.0004 23 1 3.6770 -0.9604 2.0387 24 1 5.0073 -0.4323 1.1919 25 1 3.7231 -2.8766 2.1006 26 1 4.5337 -5.2001 2.1028 27 1 5.7136 -8.4012 1.8553 28 1 5.2351 -4.9480 -2.1098 29 1 4.4119 -2.6291 -2.1020 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260831131.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:50 Heat of formation + Delta-G solvation = -86.145451 kcal Electronic energy + Delta-G solvation = -16764.911064 eV Core-core repulsion = 13642.241093 eV Total energy + Delta-G solvation = -3122.669971 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.054 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -50.36925 -48.37842 -40.37260 -36.62296 -34.02775 -32.13224 -31.15833 -28.40675 -27.99041 -24.83141 -23.70782 -21.72663 -19.78168 -18.99266 -18.96002 -18.55433 -17.82791 -16.90883 -16.71182 -16.07199 -15.66462 -15.40803 -15.28901 -14.72662 -14.71123 -14.48890 -14.28423 -14.09342 -13.79469 -13.52635 -12.77600 -12.71408 -12.22447 -12.07446 -11.67000 -11.51901 -11.46732 -10.77382 -10.67993 -9.99660 -9.44019 -8.66456 -8.25776 -6.40011 -0.24941 0.16187 0.36416 0.71226 1.51586 1.58330 1.71890 2.51940 2.67374 2.75966 3.09098 3.32262 3.39318 3.78488 3.88258 4.07775 4.15464 4.42461 4.44128 4.74703 4.83404 5.09343 5.14479 5.31457 5.47962 5.73416 5.88185 6.11186 6.43177 6.73543 6.95364 7.36881 8.87356 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.037764 B = 0.005154 C = 0.005061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.260880 B = 5431.129069 C = 5531.544438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.027 3.973 3 Si 1.003 2.997 4 H -0.277 1.277 5 H -0.257 1.257 6 H -0.324 1.324 7 C -0.516 4.516 8 H 0.026 0.974 9 C 0.223 3.777 10 H 0.050 0.950 11 N -0.843 5.843 12 C -0.082 4.082 13 C -0.111 4.111 14 C -0.124 4.124 15 C -0.124 4.124 16 S -0.093 6.093 17 C 0.270 3.730 18 F -0.191 7.191 19 F -0.194 7.194 20 C -0.088 4.088 21 C -0.113 4.113 22 H 0.265 0.735 23 H 0.340 0.660 24 H 0.334 0.666 25 H 0.123 0.877 26 H 0.129 0.871 27 H 0.209 0.791 28 H 0.150 0.850 29 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.405 -14.782 1.904 21.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.172 4.172 3 Si 0.833 3.167 4 H -0.203 1.203 5 H -0.181 1.181 6 H -0.254 1.254 7 C -0.554 4.554 8 H 0.045 0.955 9 C 0.113 3.887 10 H 0.068 0.932 11 N -0.374 5.374 12 C -0.086 4.086 13 C -0.131 4.131 14 C -0.147 4.147 15 C -0.236 4.236 16 S 0.143 5.857 17 C 0.107 3.893 18 F -0.173 7.173 19 F -0.176 7.176 20 C -0.111 4.111 21 C -0.133 4.133 22 H 0.074 0.926 23 H 0.154 0.846 24 H 0.147 0.853 25 H 0.141 0.859 26 H 0.147 0.853 27 H 0.225 0.775 28 H 0.168 0.832 29 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 15.268 -14.814 0.854 21.291 hybrid contribution -0.476 0.802 1.378 1.665 sum 14.792 -14.011 2.233 20.496 Atomic orbital electron populations 1.70092 1.08629 1.28264 1.51732 1.25889 0.95190 1.03707 0.92449 0.84803 0.77505 0.76297 0.78115 1.20347 1.18135 1.25440 1.20946 0.89980 0.92615 1.51839 0.95531 1.18427 0.93259 0.85898 0.91141 0.93173 1.59079 1.14780 1.58035 1.05515 1.21181 0.94809 0.98873 0.93740 1.20919 0.99557 0.94132 0.98504 1.21356 1.00364 0.95995 0.97008 1.21554 1.07168 0.97653 0.97245 1.85861 1.81090 1.09534 1.09177 1.24864 0.75465 0.99554 0.89367 1.93094 1.74096 1.74101 1.75979 1.93106 1.35515 1.97176 1.91795 1.20923 0.99626 0.93695 0.96810 1.21220 0.98661 0.95238 0.98195 0.92615 0.84601 0.85274 0.85948 0.85334 0.77525 0.83230 0.84459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.75 13.96 21.45 0.30 -59.45 15 2 C 0.03 1.56 5.47 84.66 0.46 2.02 15 3 Si 1.00 48.73 26.03 68.60 1.79 50.51 15 4 H -0.28 -13.28 7.11 99.48 0.71 -12.57 15 5 H -0.26 -11.63 6.54 99.48 0.65 -10.98 15 6 H -0.32 -15.93 7.11 99.48 0.71 -15.23 15 7 C -0.52 -29.09 9.29 25.60 0.24 -28.86 15 8 H 0.03 1.69 7.98 -2.91 -0.02 1.67 15 9 C 0.22 9.95 2.34 43.42 0.10 10.05 15 10 H 0.05 2.27 7.05 -2.38 -0.02 2.25 15 11 N -0.84 -33.42 6.59 -174.94 -1.15 -34.57 15 12 C -0.08 -3.23 4.89 -19.83 -0.10 -3.32 15 13 C -0.11 -4.09 9.28 22.25 0.21 -3.88 15 14 C -0.12 -4.07 8.69 22.41 0.19 -3.87 15 15 C -0.12 -3.71 6.11 22.62 0.14 -3.57 15 16 S -0.09 -2.00 22.16 -56.49 -1.25 -3.25 15 17 C 0.27 4.64 5.37 113.37 0.61 5.25 15 18 F -0.19 -4.04 15.64 44.97 0.70 -3.33 15 19 F -0.19 -4.46 15.65 44.97 0.70 -3.76 15 20 C -0.09 -2.62 9.79 22.41 0.22 -2.40 15 21 C -0.11 -3.90 9.66 22.25 0.21 -3.69 15 22 H 0.27 15.74 8.31 -92.71 -0.77 14.97 15 23 H 0.34 13.09 7.33 -89.70 -0.66 12.43 15 24 H 0.33 11.03 9.06 -89.70 -0.81 10.22 15 25 H 0.12 4.41 6.65 -2.91 -0.02 4.39 15 26 H 0.13 3.88 4.55 -2.91 -0.01 3.87 15 27 H 0.21 1.30 8.14 -2.39 -0.02 1.28 15 28 H 0.15 3.57 8.06 -2.91 -0.02 3.54 15 29 H 0.14 4.35 8.03 -2.91 -0.02 4.33 15 Total: -1.00 -68.99 266.84 3.06 -65.93 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: -0.31 Total: 20.18 kcal Atomic # 6 Polarization: -34.56 SS G_CDS: 2.29 Total: -32.27 kcal Atomic # 7 Polarization: -93.16 SS G_CDS: -0.85 Total: -94.01 kcal Atomic # 9 Polarization: -8.50 SS G_CDS: 1.41 Total: -7.09 kcal Atomic # 14 Polarization: 48.73 SS G_CDS: 1.79 Total: 50.51 kcal Atomic # 16 Polarization: -2.00 SS G_CDS: -1.25 Total: -3.25 kcal Total: -68.99 3.06 -65.93 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260831131.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.216 kcal (2) G-P(sol) polarization free energy of solvation -68.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds