Wall clock time and date at job start Mon Mar 30 2020 06:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48501 * 109.46758 * 269.72240 * 3 2 1 5 5 H 1.48499 * 109.47026 * 29.72088 * 3 2 1 6 6 H 1.48496 * 109.47474 * 149.72124 * 3 2 1 7 7 C 1.37884 * 119.99573 * 179.72306 * 2 1 3 8 8 H 1.08002 * 119.99706 * 0.27353 * 7 2 1 9 9 C 1.50699 * 119.99783 * 180.27665 * 7 2 1 10 10 H 1.09005 * 109.47370 * 60.00470 * 9 7 2 11 11 N 1.46891 * 109.47265 * 299.99906 * 9 7 2 12 12 C 1.50701 * 109.46837 * 179.97438 * 9 7 2 13 13 C 1.38299 * 119.91779 * 79.72716 * 12 9 7 14 14 C 1.38092 * 120.08045 * 179.72388 * 13 12 9 15 15 C 1.38970 * 119.91609 * 0.55003 * 14 13 12 16 16 S 1.76200 * 120.07999 * 179.75193 * 15 14 13 17 17 C 1.81401 * 103.00051 * 359.97131 * 16 15 14 18 18 F 1.39897 * 109.47231 * 300.00864 * 17 16 15 19 19 F 1.39900 * 109.46556 * 60.00446 * 17 16 15 20 20 C 1.38977 * 119.84111 * 359.72501 * 15 14 13 21 21 C 1.38080 * 119.92018 * 0.02562 * 20 15 14 22 22 H 0.97004 * 119.99485 * 0.02562 * 1 2 3 23 23 H 1.00898 * 111.00132 * 299.99806 * 11 9 7 24 24 H 1.00900 * 111.00439 * 63.95189 * 11 9 7 25 25 H 1.07997 * 119.96129 * 359.97438 * 13 12 9 26 26 H 1.07998 * 120.03956 * 180.27630 * 14 13 12 27 27 H 1.08993 * 109.47164 * 180.02562 * 17 16 15 28 28 H 1.08006 * 120.04140 * 179.97438 * 20 15 14 29 29 H 1.08006 * 119.96291 * 180.02562 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.5027 2.0428 -1.4001 5 1 1.4439 2.6543 0.6941 6 1 3.5439 1.4417 0.7059 7 6 2.0045 -1.1941 0.0058 8 1 1.4644 -2.1294 0.0058 9 6 3.5114 -1.1942 0.0121 10 1 3.8711 -0.6783 0.9024 11 7 4.0062 -0.5047 -1.1869 12 6 4.0137 -2.6150 0.0182 13 6 4.0469 -3.3400 -1.1590 14 6 4.5118 -4.6403 -1.1583 15 6 4.9358 -5.2241 0.0295 16 16 5.5237 -6.8851 0.0366 17 6 5.3773 -7.3772 -1.7033 18 9 4.0404 -7.2815 -2.1041 19 9 6.1630 -6.5322 -2.4944 20 6 4.8956 -4.4944 1.2116 21 6 4.4344 -3.1929 1.2023 22 1 -0.4849 0.8401 -0.0004 23 1 3.6862 -0.9642 -2.0262 24 1 3.7367 0.4677 -1.1820 25 1 3.7127 -2.8873 -2.0808 26 1 4.5417 -5.2043 -2.0788 27 1 5.7186 -8.4057 -1.8199 28 1 5.2240 -4.9450 2.1366 29 1 4.4032 -2.6251 2.1205 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260831138.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:52 Heat of formation + Delta-G solvation = -61.426167 kcal Electronic energy + Delta-G solvation = -16766.646366 eV Core-core repulsion = 13645.048303 eV Total energy + Delta-G solvation = -3121.598063 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.054 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.41289 -47.40810 -38.85443 -35.04781 -32.00312 -30.69782 -29.84513 -27.15237 -26.21117 -23.30523 -22.31876 -20.12861 -18.69393 -18.02182 -17.60442 -17.08083 -16.61461 -15.76375 -14.78407 -14.57549 -14.29891 -14.24487 -13.89891 -13.73402 -13.20340 -12.97619 -12.71791 -12.70762 -12.36030 -11.74638 -11.43337 -10.96048 -10.83188 -10.67206 -10.33003 -10.11831 -9.58883 -9.44875 -8.83288 -8.54086 -7.76038 -7.32102 -6.28362 -4.32839 0.71384 1.64324 1.83030 1.92824 3.09524 3.23891 3.24403 3.53548 4.14684 4.16554 4.18257 4.25817 5.00409 5.20976 5.23293 5.50486 5.79199 5.92361 6.01553 6.17828 6.33527 6.59213 6.69524 6.87198 7.23240 7.39825 7.43215 7.99832 8.20945 8.41768 8.78738 9.29856 10.84038 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.037985 B = 0.005147 C = 0.005049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.957438 B = 5438.664251 C = 5543.910974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.074 3.926 3 Si 0.873 3.127 4 H -0.274 1.274 5 H -0.290 1.290 6 H -0.258 1.258 7 C -0.548 4.548 8 H 0.077 0.923 9 C 0.204 3.796 10 H 0.053 0.947 11 N -0.849 5.849 12 C -0.007 4.007 13 C -0.089 4.089 14 C -0.119 4.119 15 C -0.118 4.118 16 S -0.119 6.119 17 C 0.275 3.725 18 F -0.180 7.180 19 F -0.182 7.182 20 C -0.088 4.088 21 C -0.109 4.109 22 H 0.267 0.733 23 H 0.331 0.669 24 H 0.319 0.681 25 H 0.126 0.874 26 H 0.119 0.881 27 H 0.152 0.848 28 H 0.122 0.878 29 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.244 -12.489 -1.782 16.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.130 4.130 3 Si 0.702 3.298 4 H -0.201 1.201 5 H -0.217 1.217 6 H -0.183 1.183 7 C -0.587 4.587 8 H 0.095 0.905 9 C 0.095 3.905 10 H 0.071 0.929 11 N -0.382 5.382 12 C -0.009 4.009 13 C -0.109 4.109 14 C -0.142 4.142 15 C -0.230 4.230 16 S 0.117 5.883 17 C 0.112 3.888 18 F -0.162 7.162 19 F -0.163 7.163 20 C -0.111 4.111 21 C -0.129 4.129 22 H 0.077 0.923 23 H 0.144 0.856 24 H 0.135 0.865 25 H 0.144 0.856 26 H 0.137 0.863 27 H 0.169 0.831 28 H 0.140 0.860 29 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 12.213 -13.288 -0.693 18.061 hybrid contribution -1.335 1.883 -1.309 2.653 sum 10.878 -11.405 -2.002 15.888 Atomic orbital electron populations 1.69895 1.06216 1.27279 1.49006 1.25036 0.94860 0.99043 0.94073 0.87002 0.80363 0.83772 0.78675 1.20095 1.21664 1.18318 1.21600 0.89374 0.95062 1.52691 0.90484 1.18552 0.93773 0.87280 0.90907 0.92948 1.59729 1.66914 1.05703 1.05896 1.20187 0.91611 0.96843 0.92231 1.20826 0.98531 0.92759 0.98824 1.21230 1.00453 0.96590 0.95885 1.21111 1.09032 0.95167 0.97707 1.85946 1.82365 1.13101 1.06936 1.24217 0.76193 0.97363 0.91043 1.93127 1.34381 1.97052 1.91639 1.93115 1.73732 1.73510 1.75971 1.20554 1.00689 0.94274 0.95601 1.20951 0.99264 0.94267 0.98423 0.92284 0.85622 0.86546 0.85641 0.86333 0.83145 0.86041 0.85472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.23 13.96 55.43 0.77 -25.45 15 2 C 0.07 2.04 5.47 -17.82 -0.10 1.95 15 3 Si 0.87 20.47 24.61 -169.99 -4.18 16.29 15 4 H -0.27 -6.18 7.01 56.52 0.40 -5.79 15 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 15 6 H -0.26 -5.87 6.54 56.52 0.37 -5.50 15 7 C -0.55 -14.83 9.28 -34.44 -0.32 -15.14 15 8 H 0.08 2.32 7.98 -52.49 -0.42 1.90 15 9 C 0.20 4.71 2.47 -70.02 -0.17 4.53 15 10 H 0.05 1.24 7.06 -51.93 -0.37 0.87 15 11 N -0.85 -18.33 8.98 -6.65 -0.06 -18.39 15 12 C -0.01 -0.14 4.90 -104.57 -0.51 -0.65 15 13 C -0.09 -1.73 9.28 -39.61 -0.37 -2.10 15 14 C -0.12 -2.09 8.69 -39.36 -0.34 -2.43 15 15 C -0.12 -1.95 6.11 -39.04 -0.24 -2.19 15 16 S -0.12 -1.51 22.17 -107.50 -2.38 -3.90 15 17 C 0.27 2.93 5.37 101.05 0.54 3.47 15 18 F -0.18 -2.33 15.65 2.25 0.04 -2.30 15 19 F -0.18 -2.26 15.64 2.25 0.04 -2.22 15 20 C -0.09 -1.46 9.79 -39.37 -0.39 -1.84 15 21 C -0.11 -2.01 9.66 -39.61 -0.38 -2.39 15 22 H 0.27 7.39 8.31 -40.82 -0.34 7.05 15 23 H 0.33 6.78 7.34 -39.29 -0.29 6.49 15 24 H 0.32 6.98 4.30 -39.29 -0.17 6.81 15 25 H 0.13 2.35 6.67 -52.49 -0.35 2.00 15 26 H 0.12 1.93 4.55 -52.49 -0.24 1.69 15 27 H 0.15 0.89 8.14 -51.93 -0.42 0.47 15 28 H 0.12 1.68 8.06 -52.48 -0.42 1.26 15 29 H 0.13 2.15 8.03 -52.48 -0.42 1.72 15 LS Contribution 263.12 15.07 3.97 3.97 Total: -1.00 -29.90 263.12 -6.36 -36.26 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -2.27 Total: 12.53 kcal Atomic # 6 Polarization: -14.52 SS G_CDS: -2.28 Total: -16.79 kcal Atomic # 7 Polarization: -44.55 SS G_CDS: 0.71 Total: -43.84 kcal Atomic # 9 Polarization: -4.59 SS G_CDS: 0.07 Total: -4.52 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -4.18 Total: 16.29 kcal Atomic # 16 Polarization: -1.51 SS G_CDS: -2.38 Total: -3.90 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -29.90 -6.36 -36.26 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260831138.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.162 kcal (2) G-P(sol) polarization free energy of solvation -29.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds