Wall clock time and date at job start Mon Mar 30 2020 06:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48501 * 109.46758 * 269.72240 * 3 2 1 5 5 H 1.48499 * 109.47026 * 29.72088 * 3 2 1 6 6 H 1.48496 * 109.47474 * 149.72124 * 3 2 1 7 7 C 1.37884 * 119.99573 * 179.72306 * 2 1 3 8 8 H 1.08002 * 119.99706 * 0.27353 * 7 2 1 9 9 C 1.50699 * 119.99783 * 180.27665 * 7 2 1 10 10 H 1.09005 * 109.47370 * 60.00470 * 9 7 2 11 11 N 1.46891 * 109.47265 * 299.99906 * 9 7 2 12 12 C 1.50701 * 109.46837 * 179.97438 * 9 7 2 13 13 C 1.38299 * 119.91779 * 79.72716 * 12 9 7 14 14 C 1.38092 * 120.08045 * 179.72388 * 13 12 9 15 15 C 1.38970 * 119.91609 * 0.55003 * 14 13 12 16 16 S 1.76200 * 120.07999 * 179.75193 * 15 14 13 17 17 C 1.81401 * 103.00051 * 359.97131 * 16 15 14 18 18 F 1.39897 * 109.47231 * 300.00864 * 17 16 15 19 19 F 1.39900 * 109.46556 * 60.00446 * 17 16 15 20 20 C 1.38977 * 119.84111 * 359.72501 * 15 14 13 21 21 C 1.38080 * 119.92018 * 0.02562 * 20 15 14 22 22 H 0.97004 * 119.99485 * 0.02562 * 1 2 3 23 23 H 1.00898 * 111.00132 * 299.99806 * 11 9 7 24 24 H 1.00900 * 111.00439 * 63.95189 * 11 9 7 25 25 H 1.07997 * 119.96129 * 359.97438 * 13 12 9 26 26 H 1.07998 * 120.03956 * 180.27630 * 14 13 12 27 27 H 1.08993 * 109.47164 * 180.02562 * 17 16 15 28 28 H 1.08006 * 120.04140 * 179.97438 * 20 15 14 29 29 H 1.08006 * 119.96291 * 180.02562 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.5027 2.0428 -1.4001 5 1 1.4439 2.6543 0.6941 6 1 3.5439 1.4417 0.7059 7 6 2.0045 -1.1941 0.0058 8 1 1.4644 -2.1294 0.0058 9 6 3.5114 -1.1942 0.0121 10 1 3.8711 -0.6783 0.9024 11 7 4.0062 -0.5047 -1.1869 12 6 4.0137 -2.6150 0.0182 13 6 4.0469 -3.3400 -1.1590 14 6 4.5118 -4.6403 -1.1583 15 6 4.9358 -5.2241 0.0295 16 16 5.5237 -6.8851 0.0366 17 6 5.3773 -7.3772 -1.7033 18 9 4.0404 -7.2815 -2.1041 19 9 6.1630 -6.5322 -2.4944 20 6 4.8956 -4.4944 1.2116 21 6 4.4344 -3.1929 1.2023 22 1 -0.4849 0.8401 -0.0004 23 1 3.6862 -0.9642 -2.0262 24 1 3.7367 0.4677 -1.1820 25 1 3.7127 -2.8873 -2.0808 26 1 4.5417 -5.2043 -2.0788 27 1 5.7186 -8.4057 -1.8199 28 1 5.2240 -4.9450 2.1366 29 1 4.4032 -2.6251 2.1205 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260831138.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:52 Heat of formation + Delta-G solvation = -81.429854 kcal Electronic energy + Delta-G solvation = -16767.513791 eV Core-core repulsion = 13645.048303 eV Total energy + Delta-G solvation = -3122.465488 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.054 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -50.33291 -48.34237 -40.30158 -36.81612 -34.04474 -32.09477 -31.35802 -28.24427 -27.93529 -25.00048 -23.70980 -21.75734 -19.76137 -19.10351 -18.94420 -18.51836 -17.83712 -17.47535 -16.38775 -16.23205 -15.64846 -15.26858 -15.24674 -14.78366 -14.67534 -14.42446 -14.34517 -14.06763 -13.79314 -13.49715 -12.92390 -12.83520 -12.33382 -12.14779 -11.82864 -11.51025 -11.42269 -10.94055 -10.77631 -9.93570 -9.50554 -8.61715 -8.41525 -6.51420 -0.20871 0.22543 0.42872 0.75198 1.23639 1.31921 1.41221 2.19579 2.73539 2.79283 2.91635 3.35734 3.42618 3.83231 3.85908 3.93268 4.25967 4.47088 4.49038 4.76379 4.83825 5.11867 5.19514 5.33647 5.36890 5.77814 5.91759 6.03224 6.35395 6.52328 6.65065 7.15367 8.74189 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.037985 B = 0.005147 C = 0.005049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.957438 B = 5438.664251 C = 5543.910974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.018 3.982 3 Si 0.940 3.060 4 H -0.256 1.256 5 H -0.291 1.291 6 H -0.244 1.244 7 C -0.549 4.549 8 H 0.030 0.970 9 C 0.212 3.788 10 H 0.049 0.951 11 N -0.838 5.838 12 C -0.041 4.041 13 C -0.103 4.103 14 C -0.125 4.125 15 C -0.126 4.126 16 S -0.093 6.093 17 C 0.270 3.730 18 F -0.194 7.194 19 F -0.191 7.191 20 C -0.087 4.087 21 C -0.117 4.117 22 H 0.269 0.731 23 H 0.337 0.663 24 H 0.318 0.682 25 H 0.121 0.879 26 H 0.130 0.870 27 H 0.209 0.791 28 H 0.152 0.848 29 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.418 -13.502 -1.769 19.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.182 4.182 3 Si 0.765 3.235 4 H -0.181 1.181 5 H -0.218 1.218 6 H -0.168 1.168 7 C -0.588 4.588 8 H 0.048 0.952 9 C 0.102 3.898 10 H 0.067 0.933 11 N -0.372 5.372 12 C -0.043 4.043 13 C -0.123 4.123 14 C -0.148 4.148 15 C -0.237 4.237 16 S 0.144 5.856 17 C 0.107 3.893 18 F -0.176 7.176 19 F -0.173 7.173 20 C -0.110 4.110 21 C -0.137 4.137 22 H 0.079 0.921 23 H 0.150 0.850 24 H 0.134 0.866 25 H 0.139 0.861 26 H 0.147 0.853 27 H 0.225 0.775 28 H 0.169 0.831 29 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 14.409 -14.321 -0.690 20.327 hybrid contribution -2.007 1.986 -1.323 3.118 sum 12.403 -12.335 -2.013 17.608 Atomic orbital electron populations 1.70050 1.08207 1.28431 1.50903 1.25915 0.95588 1.03066 0.93592 0.85921 0.79254 0.78578 0.79759 1.18097 1.21820 1.16826 1.21798 0.91748 0.93262 1.52030 0.95152 1.18355 0.90932 0.89292 0.91193 0.93271 1.59688 1.66275 1.05540 1.05678 1.20100 0.94358 0.96049 0.93800 1.20876 0.99239 0.93829 0.98389 1.21351 1.00459 0.95977 0.97005 1.21531 1.07316 0.97701 0.97192 1.85809 1.81366 1.09368 1.09101 1.24864 0.75458 0.99563 0.89368 1.93103 1.35663 1.97182 1.91636 1.93097 1.73902 1.74205 1.76091 1.20873 0.99672 0.93498 0.96915 1.21156 0.99079 0.95432 0.98003 0.92140 0.85003 0.86645 0.86089 0.85268 0.77508 0.83066 0.84484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.13 13.96 21.45 0.30 -56.83 15 2 C 0.02 1.01 5.47 84.66 0.46 1.47 15 3 Si 0.94 42.24 24.61 68.60 1.69 43.93 15 4 H -0.26 -10.67 7.01 99.48 0.70 -9.97 15 5 H -0.29 -13.11 7.11 99.48 0.71 -12.40 15 6 H -0.24 -10.36 6.54 99.48 0.65 -9.71 15 7 C -0.55 -30.68 9.28 25.60 0.24 -30.44 15 8 H 0.03 1.93 7.98 -2.91 -0.02 1.90 15 9 C 0.21 9.85 2.47 43.42 0.11 9.96 15 10 H 0.05 2.30 7.06 -2.38 -0.02 2.29 15 11 N -0.84 -35.64 8.98 -174.96 -1.57 -37.21 15 12 C -0.04 -1.71 4.90 -19.83 -0.10 -1.80 15 13 C -0.10 -4.05 9.28 22.25 0.21 -3.84 15 14 C -0.13 -4.30 8.69 22.41 0.19 -4.10 15 15 C -0.13 -3.91 6.11 22.62 0.14 -3.77 15 16 S -0.09 -2.06 22.17 -56.49 -1.25 -3.32 15 17 C 0.27 4.85 5.37 113.37 0.61 5.46 15 18 F -0.19 -4.57 15.65 44.97 0.70 -3.87 15 19 F -0.19 -4.25 15.64 44.97 0.70 -3.54 15 20 C -0.09 -2.71 9.79 22.41 0.22 -2.49 15 21 C -0.12 -4.24 9.66 22.25 0.21 -4.03 15 22 H 0.27 15.32 8.31 -92.71 -0.77 14.55 15 23 H 0.34 13.76 7.34 -89.70 -0.66 13.10 15 24 H 0.32 13.41 4.30 -89.69 -0.39 13.03 15 25 H 0.12 4.66 6.67 -2.91 -0.02 4.64 15 26 H 0.13 4.07 4.55 -2.91 -0.01 4.06 15 27 H 0.21 1.43 8.14 -2.39 -0.02 1.41 15 28 H 0.15 3.74 8.06 -2.91 -0.02 3.72 15 29 H 0.14 4.55 8.03 -2.91 -0.02 4.52 15 Total: -1.00 -66.27 263.12 2.97 -63.30 By element: Atomic # 1 Polarization: 31.03 SS G_CDS: 0.10 Total: 31.13 kcal Atomic # 6 Polarization: -35.89 SS G_CDS: 2.29 Total: -33.60 kcal Atomic # 7 Polarization: -92.77 SS G_CDS: -1.27 Total: -94.04 kcal Atomic # 9 Polarization: -8.82 SS G_CDS: 1.41 Total: -7.41 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 1.69 Total: 43.93 kcal Atomic # 16 Polarization: -2.06 SS G_CDS: -1.25 Total: -3.32 kcal Total: -66.27 2.97 -63.30 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260831138.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.126 kcal (2) G-P(sol) polarization free energy of solvation -66.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds