Wall clock time and date at job start Mon Mar 30 2020 07:02:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31510 * 1
3 3 Si 1.86798 * 120.00247 * 2 1
4 4 H 1.48500 * 109.47312 * 179.97438 * 3 2 1
5 5 H 1.48499 * 109.47285 * 299.99908 * 3 2 1
6 6 H 1.48501 * 109.47258 * 59.99824 * 3 2 1
7 7 C 1.37879 * 120.00019 * 179.97438 * 2 1 3
8 8 H 1.08000 * 119.99966 * 179.97438 * 7 2 1
9 9 C 1.50701 * 120.00065 * 0.02562 * 7 2 1
10 10 H 1.09005 * 109.46975 * 299.99793 * 9 7 2
11 11 C 1.50695 * 109.47559 * 179.97438 * 9 7 2
12 12 C 1.38969 * 119.42115 * 299.73205 * 11 9 7
13 13 C 1.36712 * 120.15353 * 179.71807 * 12 11 9
14 14 C 1.38793 * 119.75365 * 0.58591 * 13 12 11
15 15 S 1.76509 * 133.55258 * 179.71859 * 14 13 12
16 16 N 1.69393 * 96.11883 * 179.97438 * 15 14 13
17 17 C 1.28729 * 108.98351 * 0.02562 * 16 15 14
18 18 C 1.40796 * 120.92692 * 359.66290 * 14 13 12
19 19 C 1.36039 * 119.41999 * 119.99354 * 11 9 7
20 20 C 1.52999 * 109.47139 * 59.99300 * 9 7 2
21 21 C 1.53002 * 117.49968 * 179.97438 * 20 9 7
22 22 C 1.53000 * 60.02940 * 107.50530 * 21 20 9
23 23 H 0.97002 * 119.99898 * 0.02562 * 1 2 3
24 24 H 1.08003 * 119.92035 * 0.02562 * 12 11 9
25 25 H 1.07997 * 120.12643 * 180.27278 * 13 12 11
26 26 H 1.07995 * 121.08044 * 179.97438 * 17 16 15
27 27 H 1.08001 * 119.89354 * 0.02562 * 19 11 9
28 28 H 1.08999 * 115.55899 * 34.31791 * 20 9 7
29 29 H 1.09002 * 117.49918 * 0.02562 * 21 20 9
30 30 H 1.09002 * 117.49754 * 215.00713 * 21 20 9
31 31 H 1.09008 * 117.49673 * 107.47884 * 22 21 20
32 32 H 1.08999 * 117.49942 * 252.47315 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.7092 1.3463 0.0006
5 1 1.8905 2.3964 -1.2125
6 1 1.8904 2.3964 1.2125
7 6 2.0045 -1.1941 0.0005
8 1 3.0845 -1.1941 0.0001
9 6 1.2510 -2.4992 0.0005
10 1 0.6240 -2.5567 0.8904
11 6 2.2302 -3.6447 0.0005
12 6 3.1301 -3.7735 -1.0506
13 6 4.0288 -4.8036 -1.0629
14 6 4.0312 -5.7279 -0.0275
15 16 4.9966 -7.1647 0.3179
16 7 4.2242 -7.5555 1.7739
17 6 3.3038 -6.6860 2.0062
18 6 3.1239 -5.6173 1.0434
19 6 2.2141 -4.5375 1.0268
20 6 0.3718 -2.5805 -1.2489
21 6 -0.4778 -3.8394 -1.4343
22 6 -1.1449 -2.5167 -1.0518
23 1 -0.4850 0.8401 -0.0004
24 1 3.1228 -3.0552 -1.8571
25 1 4.7308 -4.9008 -1.8777
26 1 2.6865 -6.7502 2.8900
27 1 1.5028 -4.4205 1.8310
28 1 0.7830 -2.1148 -2.1445
29 1 -0.4106 -4.6096 -0.6659
30 1 -0.6252 -4.2017 -2.4517
31 1 -1.7310 -2.0086 -1.8177
32 1 -1.5167 -2.4169 -0.0320
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260849992.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:02:12
Heat of formation + Delta-G solvation = 65.532562 kcal
Electronic energy + Delta-G solvation = -16485.542116 eV
Core-core repulsion = 13923.678927 eV
Total energy + Delta-G solvation = -2561.863189 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 259.073 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-39.57309 -37.18805 -35.63560 -32.79837 -31.24766 -30.28283 -27.32689 -24.20253
-23.39093 -22.17546 -21.29824 -20.67676 -19.04329 -17.70988 -16.58549 -15.71289
-15.34976 -14.80522 -14.49029 -14.09117 -13.97672 -13.39560 -13.34238 -12.96592
-12.28334 -11.79293 -11.51757 -11.27618 -11.03795 -10.84133 -10.57020 -10.50253
-10.40897 -10.20895 -9.92385 -9.78405 -9.35775 -8.85970 -8.79286 -8.41296
-8.35195 -7.48093 -6.09761 -4.17843 0.83960 1.70291 1.71362 2.06901
2.47535 3.23126 3.32617 3.36060 4.12979 4.37259 4.66377 4.90740
5.01244 5.20985 5.44352 5.60895 5.74504 5.86866 5.88272 6.01230
6.14050 6.28280 6.33317 6.41398 6.45641 6.65649 6.78802 6.93975
6.96822 7.09329 7.16114 7.32491 7.42650 7.67338 7.85169 8.21430
8.84689 9.47542 10.95745
Molecular weight = 259.07amu
Principal moments of inertia in cm(-1)
A = 0.025736 B = 0.005987 C = 0.005406
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1087.711328 B = 4675.400992 C = 5177.738130
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.872 5.872
2 C 0.070 3.930
3 Si 0.888 3.112
4 H -0.273 1.273
5 H -0.284 1.284
6 H -0.284 1.284
7 C -0.519 4.519
8 H 0.059 0.941
9 C 0.105 3.895
10 H 0.039 0.961
11 C -0.027 4.027
12 C -0.054 4.054
13 C -0.096 4.096
14 C -0.141 4.141
15 S 0.141 5.859
16 N -0.452 5.452
17 C 0.136 3.864
18 C -0.142 4.142
19 C -0.067 4.067
20 C -0.084 4.084
21 C -0.226 4.226
22 C -0.136 4.136
23 H 0.260 0.740
24 H 0.136 0.864
25 H 0.124 0.876
26 H 0.184 0.816
27 H 0.127 0.873
28 H 0.084 0.916
29 H 0.077 0.923
30 H 0.071 0.929
31 H 0.070 0.930
32 H 0.086 0.914
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.118 -8.336 -0.769 8.933
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.508 5.508
2 C -0.134 4.134
3 Si 0.716 3.284
4 H -0.198 1.198
5 H -0.210 1.210
6 H -0.210 1.210
7 C -0.557 4.557
8 H 0.078 0.922
9 C 0.086 3.914
10 H 0.057 0.943
11 C -0.029 4.029
12 C -0.076 4.076
13 C -0.119 4.119
14 C -0.261 4.261
15 S 0.292 5.708
16 N -0.262 5.262
17 C -0.075 4.075
18 C -0.153 4.153
19 C -0.090 4.090
20 C -0.102 4.102
21 C -0.264 4.264
22 C -0.173 4.173
23 H 0.070 0.930
24 H 0.154 0.846
25 H 0.142 0.858
26 H 0.201 0.799
27 H 0.145 0.855
28 H 0.102 0.898
29 H 0.095 0.905
30 H 0.090 0.910
31 H 0.089 0.911
32 H 0.104 0.896
Dipole moment (debyes) X Y Z Total
from point charges 4.516 -10.008 -0.799 11.009
hybrid contribution -0.872 2.318 0.177 2.482
sum 3.644 -7.691 -0.622 8.533
Atomic orbital electron populations
1.70024 1.05674 1.26375 1.48761 1.24940 0.94847 0.98891 0.94709
0.86595 0.80270 0.83907 0.77612 1.19762 1.21032 1.21041 1.21006
0.92806 0.89341 1.52549 0.92246 1.17591 0.90579 0.89708 0.93510
0.94282 1.20182 0.95810 0.95159 0.91766 1.21078 0.92619 0.95502
0.98427 1.19942 1.00589 0.94381 0.96952 1.23215 1.01397 1.01340
1.00156 1.84565 1.42523 1.22830 1.20925 1.75830 1.12641 1.25959
1.11745 1.23908 0.94849 0.89566 0.99168 1.20361 1.00693 0.99045
0.95179 1.20615 0.97194 0.92054 0.99115 1.22206 0.92449 0.95656
0.99929 1.23074 1.10406 0.92524 1.00358 1.22445 0.96826 0.96849
1.01145 0.93045 0.84586 0.85769 0.79912 0.85525 0.89777 0.90481
0.91018 0.91105 0.89571
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.87 -22.62 11.44 55.43 0.63 -21.98 16
2 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16
3 Si 0.89 19.95 29.54 -169.99 -5.02 14.93 16
4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16
5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16
6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16
7 C -0.52 -12.79 8.21 -34.44 -0.28 -13.08 16
8 H 0.06 1.48 7.60 -52.49 -0.40 1.08 16
9 C 0.10 2.30 2.08 -92.93 -0.19 2.10 16
10 H 0.04 0.93 7.57 -51.93 -0.39 0.54 16
11 C -0.03 -0.52 4.34 -105.14 -0.46 -0.98 16
12 C -0.05 -0.95 8.73 -39.86 -0.35 -1.30 16
13 C -0.10 -1.52 10.02 -39.93 -0.40 -1.92 16
14 C -0.14 -2.32 6.71 -38.41 -0.26 -2.58 16
15 S 0.14 2.15 23.86 -107.50 -2.56 -0.42 16
16 N -0.45 -7.10 11.90 30.96 0.37 -6.73 16
17 C 0.14 1.96 11.46 -16.19 -0.19 1.77 16
18 C -0.14 -2.32 6.12 -105.14 -0.64 -2.96 16
19 C -0.07 -1.16 9.66 -39.24 -0.38 -1.54 16
20 C -0.08 -1.76 3.83 -90.58 -0.35 -2.11 16
21 C -0.23 -4.16 9.86 -26.73 -0.26 -4.42 16
22 C -0.14 -2.76 9.06 -26.70 -0.24 -3.00 16
23 H 0.26 6.53 8.31 -40.82 -0.34 6.19 16
24 H 0.14 2.33 8.03 -52.48 -0.42 1.91 16
25 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16
26 H 0.18 1.97 8.06 -52.49 -0.42 1.54 16
27 H 0.13 1.99 7.88 -52.49 -0.41 1.58 16
28 H 0.08 1.86 8.11 -51.93 -0.42 1.44 16
29 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16
30 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16
31 H 0.07 1.41 8.14 -51.92 -0.42 0.98 16
32 H 0.09 1.85 8.05 -51.93 -0.42 1.43 16
LS Contribution 289.53 15.07 4.36 4.36
Total: -1.00 -26.25 289.53 -10.03 -36.28
By element:
Atomic # 1 Polarization: 5.61 SS G_CDS: -3.71 Total: 1.90 kcal
Atomic # 6 Polarization: -24.25 SS G_CDS: -4.09 Total: -28.34 kcal
Atomic # 7 Polarization: -29.71 SS G_CDS: 1.00 Total: -28.71 kcal
Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal
Atomic # 16 Polarization: 2.15 SS G_CDS: -2.56 Total: -0.42 kcal
Total LS contribution 4.36 Total: 4.36 kcal
Total: -26.25 -10.03 -36.28 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260849992.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 101.810 kcal
(2) G-P(sol) polarization free energy of solvation -26.249 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.561 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.028 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.277 kcal
(6) G-S(sol) free energy of system = (1) + (5) 65.533 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds