Wall clock time and date at job start Mon Mar 30 2020 07:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 120.00247 * 2 1 4 4 H 1.48500 * 109.47312 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47285 * 299.99908 * 3 2 1 6 6 H 1.48501 * 109.47258 * 59.99824 * 3 2 1 7 7 C 1.37879 * 120.00019 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99966 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00065 * 0.02562 * 7 2 1 10 10 H 1.09005 * 109.46975 * 299.99793 * 9 7 2 11 11 C 1.50695 * 109.47559 * 179.97438 * 9 7 2 12 12 C 1.38969 * 119.42115 * 299.73205 * 11 9 7 13 13 C 1.36712 * 120.15353 * 179.71807 * 12 11 9 14 14 C 1.38793 * 119.75365 * 0.58591 * 13 12 11 15 15 S 1.76509 * 133.55258 * 179.71859 * 14 13 12 16 16 N 1.69393 * 96.11883 * 179.97438 * 15 14 13 17 17 C 1.28729 * 108.98351 * 0.02562 * 16 15 14 18 18 C 1.40796 * 120.92692 * 359.66290 * 14 13 12 19 19 C 1.36039 * 119.41999 * 119.99354 * 11 9 7 20 20 C 1.52999 * 109.47139 * 59.99300 * 9 7 2 21 21 C 1.53002 * 117.49968 * 179.97438 * 20 9 7 22 22 C 1.53000 * 60.02940 * 107.50530 * 21 20 9 23 23 H 0.97002 * 119.99898 * 0.02562 * 1 2 3 24 24 H 1.08003 * 119.92035 * 0.02562 * 12 11 9 25 25 H 1.07997 * 120.12643 * 180.27278 * 13 12 11 26 26 H 1.07995 * 121.08044 * 179.97438 * 17 16 15 27 27 H 1.08001 * 119.89354 * 0.02562 * 19 11 9 28 28 H 1.08999 * 115.55899 * 34.31791 * 20 9 7 29 29 H 1.09002 * 117.49918 * 0.02562 * 21 20 9 30 30 H 1.09002 * 117.49754 * 215.00713 * 21 20 9 31 31 H 1.09008 * 117.49673 * 107.47884 * 22 21 20 32 32 H 1.08999 * 117.49942 * 252.47315 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6240 -2.5567 0.8904 11 6 2.2302 -3.6447 0.0005 12 6 3.1301 -3.7735 -1.0506 13 6 4.0288 -4.8036 -1.0629 14 6 4.0312 -5.7279 -0.0275 15 16 4.9966 -7.1647 0.3179 16 7 4.2242 -7.5555 1.7739 17 6 3.3038 -6.6860 2.0062 18 6 3.1239 -5.6173 1.0434 19 6 2.2141 -4.5375 1.0268 20 6 0.3718 -2.5805 -1.2489 21 6 -0.4778 -3.8394 -1.4343 22 6 -1.1449 -2.5167 -1.0518 23 1 -0.4850 0.8401 -0.0004 24 1 3.1228 -3.0552 -1.8571 25 1 4.7308 -4.9008 -1.8777 26 1 2.6865 -6.7502 2.8900 27 1 1.5028 -4.4205 1.8310 28 1 0.7830 -2.1148 -2.1445 29 1 -0.4106 -4.6096 -0.6659 30 1 -0.6252 -4.2017 -2.4517 31 1 -1.7310 -2.0086 -1.8177 32 1 -1.5167 -2.4169 -0.0320 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260849992.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:12 Heat of formation + Delta-G solvation = 65.532562 kcal Electronic energy + Delta-G solvation = -16485.542116 eV Core-core repulsion = 13923.678927 eV Total energy + Delta-G solvation = -2561.863189 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.57309 -37.18805 -35.63560 -32.79837 -31.24766 -30.28283 -27.32689 -24.20253 -23.39093 -22.17546 -21.29824 -20.67676 -19.04329 -17.70988 -16.58549 -15.71289 -15.34976 -14.80522 -14.49029 -14.09117 -13.97672 -13.39560 -13.34238 -12.96592 -12.28334 -11.79293 -11.51757 -11.27618 -11.03795 -10.84133 -10.57020 -10.50253 -10.40897 -10.20895 -9.92385 -9.78405 -9.35775 -8.85970 -8.79286 -8.41296 -8.35195 -7.48093 -6.09761 -4.17843 0.83960 1.70291 1.71362 2.06901 2.47535 3.23126 3.32617 3.36060 4.12979 4.37259 4.66377 4.90740 5.01244 5.20985 5.44352 5.60895 5.74504 5.86866 5.88272 6.01230 6.14050 6.28280 6.33317 6.41398 6.45641 6.65649 6.78802 6.93975 6.96822 7.09329 7.16114 7.32491 7.42650 7.67338 7.85169 8.21430 8.84689 9.47542 10.95745 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.025736 B = 0.005987 C = 0.005406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.711328 B = 4675.400992 C = 5177.738130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.070 3.930 3 Si 0.888 3.112 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.059 0.941 9 C 0.105 3.895 10 H 0.039 0.961 11 C -0.027 4.027 12 C -0.054 4.054 13 C -0.096 4.096 14 C -0.141 4.141 15 S 0.141 5.859 16 N -0.452 5.452 17 C 0.136 3.864 18 C -0.142 4.142 19 C -0.067 4.067 20 C -0.084 4.084 21 C -0.226 4.226 22 C -0.136 4.136 23 H 0.260 0.740 24 H 0.136 0.864 25 H 0.124 0.876 26 H 0.184 0.816 27 H 0.127 0.873 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.118 -8.336 -0.769 8.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.134 4.134 3 Si 0.716 3.284 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.557 4.557 8 H 0.078 0.922 9 C 0.086 3.914 10 H 0.057 0.943 11 C -0.029 4.029 12 C -0.076 4.076 13 C -0.119 4.119 14 C -0.261 4.261 15 S 0.292 5.708 16 N -0.262 5.262 17 C -0.075 4.075 18 C -0.153 4.153 19 C -0.090 4.090 20 C -0.102 4.102 21 C -0.264 4.264 22 C -0.173 4.173 23 H 0.070 0.930 24 H 0.154 0.846 25 H 0.142 0.858 26 H 0.201 0.799 27 H 0.145 0.855 28 H 0.102 0.898 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.516 -10.008 -0.799 11.009 hybrid contribution -0.872 2.318 0.177 2.482 sum 3.644 -7.691 -0.622 8.533 Atomic orbital electron populations 1.70024 1.05674 1.26375 1.48761 1.24940 0.94847 0.98891 0.94709 0.86595 0.80270 0.83907 0.77612 1.19762 1.21032 1.21041 1.21006 0.92806 0.89341 1.52549 0.92246 1.17591 0.90579 0.89708 0.93510 0.94282 1.20182 0.95810 0.95159 0.91766 1.21078 0.92619 0.95502 0.98427 1.19942 1.00589 0.94381 0.96952 1.23215 1.01397 1.01340 1.00156 1.84565 1.42523 1.22830 1.20925 1.75830 1.12641 1.25959 1.11745 1.23908 0.94849 0.89566 0.99168 1.20361 1.00693 0.99045 0.95179 1.20615 0.97194 0.92054 0.99115 1.22206 0.92449 0.95656 0.99929 1.23074 1.10406 0.92524 1.00358 1.22445 0.96826 0.96849 1.01145 0.93045 0.84586 0.85769 0.79912 0.85525 0.89777 0.90481 0.91018 0.91105 0.89571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.62 11.44 55.43 0.63 -21.98 16 2 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 3 Si 0.89 19.95 29.54 -169.99 -5.02 14.93 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.52 -12.79 8.21 -34.44 -0.28 -13.08 16 8 H 0.06 1.48 7.60 -52.49 -0.40 1.08 16 9 C 0.10 2.30 2.08 -92.93 -0.19 2.10 16 10 H 0.04 0.93 7.57 -51.93 -0.39 0.54 16 11 C -0.03 -0.52 4.34 -105.14 -0.46 -0.98 16 12 C -0.05 -0.95 8.73 -39.86 -0.35 -1.30 16 13 C -0.10 -1.52 10.02 -39.93 -0.40 -1.92 16 14 C -0.14 -2.32 6.71 -38.41 -0.26 -2.58 16 15 S 0.14 2.15 23.86 -107.50 -2.56 -0.42 16 16 N -0.45 -7.10 11.90 30.96 0.37 -6.73 16 17 C 0.14 1.96 11.46 -16.19 -0.19 1.77 16 18 C -0.14 -2.32 6.12 -105.14 -0.64 -2.96 16 19 C -0.07 -1.16 9.66 -39.24 -0.38 -1.54 16 20 C -0.08 -1.76 3.83 -90.58 -0.35 -2.11 16 21 C -0.23 -4.16 9.86 -26.73 -0.26 -4.42 16 22 C -0.14 -2.76 9.06 -26.70 -0.24 -3.00 16 23 H 0.26 6.53 8.31 -40.82 -0.34 6.19 16 24 H 0.14 2.33 8.03 -52.48 -0.42 1.91 16 25 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 26 H 0.18 1.97 8.06 -52.49 -0.42 1.54 16 27 H 0.13 1.99 7.88 -52.49 -0.41 1.58 16 28 H 0.08 1.86 8.11 -51.93 -0.42 1.44 16 29 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 30 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.07 1.41 8.14 -51.92 -0.42 0.98 16 32 H 0.09 1.85 8.05 -51.93 -0.42 1.43 16 LS Contribution 289.53 15.07 4.36 4.36 Total: -1.00 -26.25 289.53 -10.03 -36.28 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -3.71 Total: 1.90 kcal Atomic # 6 Polarization: -24.25 SS G_CDS: -4.09 Total: -28.34 kcal Atomic # 7 Polarization: -29.71 SS G_CDS: 1.00 Total: -28.71 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Atomic # 16 Polarization: 2.15 SS G_CDS: -2.56 Total: -0.42 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -26.25 -10.03 -36.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260849992.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.810 kcal (2) G-P(sol) polarization free energy of solvation -26.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds