Wall clock time and date at job start Mon Mar 30 2020 07:02:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31510 * 1
3 3 Si 1.86798 * 120.00247 * 2 1
4 4 H 1.48500 * 109.47312 * 179.97438 * 3 2 1
5 5 H 1.48499 * 109.47285 * 299.99908 * 3 2 1
6 6 H 1.48501 * 109.47258 * 59.99824 * 3 2 1
7 7 C 1.37879 * 120.00019 * 179.97438 * 2 1 3
8 8 H 1.08000 * 119.99966 * 179.97438 * 7 2 1
9 9 C 1.50701 * 120.00065 * 0.02562 * 7 2 1
10 10 H 1.09005 * 109.46975 * 299.99793 * 9 7 2
11 11 C 1.50695 * 109.47559 * 179.97438 * 9 7 2
12 12 C 1.38969 * 119.42115 * 299.73205 * 11 9 7
13 13 C 1.36712 * 120.15353 * 179.71807 * 12 11 9
14 14 C 1.38793 * 119.75365 * 0.58591 * 13 12 11
15 15 S 1.76509 * 133.55258 * 179.71859 * 14 13 12
16 16 N 1.69393 * 96.11883 * 179.97438 * 15 14 13
17 17 C 1.28729 * 108.98351 * 0.02562 * 16 15 14
18 18 C 1.40796 * 120.92692 * 359.66290 * 14 13 12
19 19 C 1.36039 * 119.41999 * 119.99354 * 11 9 7
20 20 C 1.52999 * 109.47139 * 59.99300 * 9 7 2
21 21 C 1.53002 * 117.49968 * 179.97438 * 20 9 7
22 22 C 1.53000 * 60.02940 * 107.50530 * 21 20 9
23 23 H 0.97002 * 119.99898 * 0.02562 * 1 2 3
24 24 H 1.08003 * 119.92035 * 0.02562 * 12 11 9
25 25 H 1.07997 * 120.12643 * 180.27278 * 13 12 11
26 26 H 1.07995 * 121.08044 * 179.97438 * 17 16 15
27 27 H 1.08001 * 119.89354 * 0.02562 * 19 11 9
28 28 H 1.08999 * 115.55899 * 34.31791 * 20 9 7
29 29 H 1.09002 * 117.49918 * 0.02562 * 21 20 9
30 30 H 1.09002 * 117.49754 * 215.00713 * 21 20 9
31 31 H 1.09008 * 117.49673 * 107.47884 * 22 21 20
32 32 H 1.08999 * 117.49942 * 252.47315 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.7092 1.3463 0.0006
5 1 1.8905 2.3964 -1.2125
6 1 1.8904 2.3964 1.2125
7 6 2.0045 -1.1941 0.0005
8 1 3.0845 -1.1941 0.0001
9 6 1.2510 -2.4992 0.0005
10 1 0.6240 -2.5567 0.8904
11 6 2.2302 -3.6447 0.0005
12 6 3.1301 -3.7735 -1.0506
13 6 4.0288 -4.8036 -1.0629
14 6 4.0312 -5.7279 -0.0275
15 16 4.9966 -7.1647 0.3179
16 7 4.2242 -7.5555 1.7739
17 6 3.3038 -6.6860 2.0062
18 6 3.1239 -5.6173 1.0434
19 6 2.2141 -4.5375 1.0268
20 6 0.3718 -2.5805 -1.2489
21 6 -0.4778 -3.8394 -1.4343
22 6 -1.1449 -2.5167 -1.0518
23 1 -0.4850 0.8401 -0.0004
24 1 3.1228 -3.0552 -1.8571
25 1 4.7308 -4.9008 -1.8777
26 1 2.6865 -6.7502 2.8900
27 1 1.5028 -4.4205 1.8310
28 1 0.7830 -2.1148 -2.1445
29 1 -0.4106 -4.6096 -0.6659
30 1 -0.6252 -4.2017 -2.4517
31 1 -1.7310 -2.0086 -1.8177
32 1 -1.5167 -2.4169 -0.0320
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260849992.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:02:12
Heat of formation + Delta-G solvation = 54.521136 kcal
Electronic energy + Delta-G solvation = -16486.019608 eV
Core-core repulsion = 13923.678927 eV
Total energy + Delta-G solvation = -2562.340681 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 259.073 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-40.89286 -38.65602 -37.00991 -34.62013 -32.74600 -31.59784 -28.96669 -25.65524
-24.94345 -23.49461 -22.83805 -22.11246 -20.58321 -19.02246 -18.38317 -17.00323
-16.67793 -16.49775 -16.09393 -15.47982 -15.26906 -14.84843 -14.60070 -14.51657
-13.93281 -13.35082 -12.98507 -12.84677 -12.58523 -12.51628 -12.14047 -12.02881
-11.82453 -11.70875 -11.57572 -11.38002 -10.72691 -10.61651 -10.40470 -10.18104
-9.70046 -8.74456 -8.01697 -6.14227 -0.41387 0.38375 0.47479 0.88404
1.26496 1.42838 1.48183 1.56116 2.47007 2.81890 3.25642 3.37045
3.50452 3.72034 4.13958 4.29405 4.38995 4.44148 4.54529 4.59719
4.66742 4.82068 4.96418 5.02139 5.05861 5.16636 5.35578 5.39347
5.53944 5.56677 5.60486 5.70113 5.87291 5.96068 6.08105 6.39055
6.93370 7.52619 9.01905
Molecular weight = 259.07amu
Principal moments of inertia in cm(-1)
A = 0.025736 B = 0.005987 C = 0.005406
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1087.711328 B = 4675.400992 C = 5177.738130
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.893 5.893
2 C 0.028 3.972
3 Si 0.940 3.060
4 H -0.272 1.272
5 H -0.283 1.283
6 H -0.286 1.286
7 C -0.527 4.527
8 H 0.051 0.949
9 C 0.111 3.889
10 H 0.013 0.987
11 C -0.047 4.047
12 C -0.064 4.064
13 C -0.088 4.088
14 C -0.154 4.154
15 S 0.157 5.843
16 N -0.467 5.467
17 C 0.144 3.856
18 C -0.147 4.147
19 C -0.068 4.068
20 C -0.098 4.098
21 C -0.193 4.193
22 C -0.144 4.144
23 H 0.258 0.742
24 H 0.133 0.867
25 H 0.151 0.849
26 H 0.220 0.780
27 H 0.137 0.863
28 H 0.069 0.931
29 H 0.084 0.916
30 H 0.093 0.907
31 H 0.072 0.928
32 H 0.070 0.930
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.878 -9.610 -0.805 10.394
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.531 5.531
2 C -0.173 4.173
3 Si 0.767 3.233
4 H -0.196 1.196
5 H -0.210 1.210
6 H -0.212 1.212
7 C -0.565 4.565
8 H 0.070 0.930
9 C 0.092 3.908
10 H 0.031 0.969
11 C -0.049 4.049
12 C -0.086 4.086
13 C -0.111 4.111
14 C -0.274 4.274
15 S 0.308 5.692
16 N -0.277 5.277
17 C -0.066 4.066
18 C -0.158 4.158
19 C -0.090 4.090
20 C -0.117 4.117
21 C -0.230 4.230
22 C -0.181 4.181
23 H 0.067 0.933
24 H 0.151 0.849
25 H 0.169 0.831
26 H 0.236 0.764
27 H 0.154 0.846
28 H 0.087 0.913
29 H 0.103 0.897
30 H 0.111 0.889
31 H 0.090 0.910
32 H 0.088 0.912
Dipole moment (debyes) X Y Z Total
from point charges 5.290 -11.294 -0.839 12.500
hybrid contribution -1.067 2.645 0.218 2.860
sum 4.224 -8.649 -0.621 9.645
Atomic orbital electron populations
1.70122 1.06513 1.26655 1.49799 1.25529 0.95531 1.01361 0.94909
0.85782 0.79227 0.80959 0.77283 1.19645 1.20954 1.21226 1.21282
0.92642 0.90861 1.51700 0.93048 1.17353 0.90772 0.89958 0.92676
0.96939 1.19971 0.96352 0.95185 0.93425 1.21055 0.93126 0.96302
0.98166 1.20158 1.00176 0.93297 0.97452 1.23523 1.01677 1.01909
1.00280 1.84512 1.42048 1.21794 1.20801 1.75855 1.13250 1.26515
1.12101 1.24311 0.94506 0.88172 0.99588 1.20547 1.00336 0.99198
0.95766 1.20667 0.97562 0.91984 0.98795 1.22013 0.92563 0.98059
0.99019 1.23057 1.06887 0.91376 1.01636 1.22369 0.96464 0.98876
1.00369 0.93294 0.84884 0.83086 0.76363 0.84555 0.91261 0.89739
0.88908 0.90950 0.91186
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -47.19 11.44 21.45 0.25 -46.94 16
2 C 0.03 1.43 5.30 84.66 0.45 1.88 16
3 Si 0.94 41.31 29.54 68.60 2.03 43.34 16
4 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16
5 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16
6 H -0.29 -12.56 7.11 99.48 0.71 -11.86 16
7 C -0.53 -26.36 8.21 25.60 0.21 -26.15 16
8 H 0.05 2.59 7.60 -2.91 -0.02 2.57 16
9 C 0.11 4.94 2.08 -12.29 -0.03 4.91 16
10 H 0.01 0.62 7.57 -2.38 -0.02 0.60 16
11 C -0.05 -1.79 4.34 -20.20 -0.09 -1.88 16
12 C -0.06 -2.20 8.73 22.09 0.19 -2.01 16
13 C -0.09 -2.64 10.02 22.04 0.22 -2.41 16
14 C -0.15 -4.73 6.71 23.03 0.15 -4.58 16
15 S 0.16 4.42 23.86 -56.49 -1.35 3.07 16
16 N -0.47 -13.42 11.90 -55.95 -0.67 -14.09 16
17 C 0.14 3.75 11.46 86.87 1.00 4.74 16
18 C -0.15 -4.50 6.12 -20.20 -0.12 -4.62 16
19 C -0.07 -2.26 9.66 22.49 0.22 -2.04 16
20 C -0.10 -4.14 3.83 -10.77 -0.04 -4.18 16
21 C -0.19 -6.83 9.86 30.60 0.30 -6.53 16
22 C -0.14 -5.87 9.06 30.62 0.28 -5.59 16
23 H 0.26 13.19 8.31 -92.71 -0.77 12.42 16
24 H 0.13 4.55 8.03 -2.91 -0.02 4.53 16
25 H 0.15 3.60 8.06 -2.91 -0.02 3.57 16
26 H 0.22 3.89 8.06 -2.91 -0.02 3.87 16
27 H 0.14 4.16 7.88 -2.91 -0.02 4.13 16
28 H 0.07 3.11 8.11 -2.39 -0.02 3.09 16
29 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16
30 H 0.09 2.91 8.14 -2.39 -0.02 2.89 16
31 H 0.07 2.88 8.14 -2.38 -0.02 2.86 16
32 H 0.07 3.07 8.05 -2.39 -0.02 3.05 16
Total: -1.00 -55.30 289.53 4.12 -51.19
By element:
Atomic # 1 Polarization: 10.78 SS G_CDS: 1.12 Total: 11.90 kcal
Atomic # 6 Polarization: -51.20 SS G_CDS: 2.74 Total: -48.46 kcal
Atomic # 7 Polarization: -60.61 SS G_CDS: -0.42 Total: -61.03 kcal
Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.34 kcal
Atomic # 16 Polarization: 4.42 SS G_CDS: -1.35 Total: 3.07 kcal
Total: -55.30 4.12 -51.19 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260849992.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 105.706 kcal
(2) G-P(sol) polarization free energy of solvation -55.304 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.402 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.119 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.185 kcal
(6) G-S(sol) free energy of system = (1) + (5) 54.521 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds