Wall clock time and date at job start Mon Mar 30 2020 07:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 120.00247 * 2 1 4 4 H 1.48500 * 109.47312 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47285 * 299.99908 * 3 2 1 6 6 H 1.48501 * 109.47258 * 59.99824 * 3 2 1 7 7 C 1.37879 * 120.00019 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99966 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00065 * 0.02562 * 7 2 1 10 10 H 1.09005 * 109.46975 * 299.99793 * 9 7 2 11 11 C 1.50695 * 109.47559 * 179.97438 * 9 7 2 12 12 C 1.38969 * 119.42115 * 299.73205 * 11 9 7 13 13 C 1.36712 * 120.15353 * 179.71807 * 12 11 9 14 14 C 1.38793 * 119.75365 * 0.58591 * 13 12 11 15 15 S 1.76509 * 133.55258 * 179.71859 * 14 13 12 16 16 N 1.69393 * 96.11883 * 179.97438 * 15 14 13 17 17 C 1.28729 * 108.98351 * 0.02562 * 16 15 14 18 18 C 1.40796 * 120.92692 * 359.66290 * 14 13 12 19 19 C 1.36039 * 119.41999 * 119.99354 * 11 9 7 20 20 C 1.52999 * 109.47139 * 59.99300 * 9 7 2 21 21 C 1.53002 * 117.49968 * 179.97438 * 20 9 7 22 22 C 1.53000 * 60.02940 * 107.50530 * 21 20 9 23 23 H 0.97002 * 119.99898 * 0.02562 * 1 2 3 24 24 H 1.08003 * 119.92035 * 0.02562 * 12 11 9 25 25 H 1.07997 * 120.12643 * 180.27278 * 13 12 11 26 26 H 1.07995 * 121.08044 * 179.97438 * 17 16 15 27 27 H 1.08001 * 119.89354 * 0.02562 * 19 11 9 28 28 H 1.08999 * 115.55899 * 34.31791 * 20 9 7 29 29 H 1.09002 * 117.49918 * 0.02562 * 21 20 9 30 30 H 1.09002 * 117.49754 * 215.00713 * 21 20 9 31 31 H 1.09008 * 117.49673 * 107.47884 * 22 21 20 32 32 H 1.08999 * 117.49942 * 252.47315 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6240 -2.5567 0.8904 11 6 2.2302 -3.6447 0.0005 12 6 3.1301 -3.7735 -1.0506 13 6 4.0288 -4.8036 -1.0629 14 6 4.0312 -5.7279 -0.0275 15 16 4.9966 -7.1647 0.3179 16 7 4.2242 -7.5555 1.7739 17 6 3.3038 -6.6860 2.0062 18 6 3.1239 -5.6173 1.0434 19 6 2.2141 -4.5375 1.0268 20 6 0.3718 -2.5805 -1.2489 21 6 -0.4778 -3.8394 -1.4343 22 6 -1.1449 -2.5167 -1.0518 23 1 -0.4850 0.8401 -0.0004 24 1 3.1228 -3.0552 -1.8571 25 1 4.7308 -4.9008 -1.8777 26 1 2.6865 -6.7502 2.8900 27 1 1.5028 -4.4205 1.8310 28 1 0.7830 -2.1148 -2.1445 29 1 -0.4106 -4.6096 -0.6659 30 1 -0.6252 -4.2017 -2.4517 31 1 -1.7310 -2.0086 -1.8177 32 1 -1.5167 -2.4169 -0.0320 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260849992.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:12 Heat of formation + Delta-G solvation = 54.521136 kcal Electronic energy + Delta-G solvation = -16486.019608 eV Core-core repulsion = 13923.678927 eV Total energy + Delta-G solvation = -2562.340681 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.89286 -38.65602 -37.00991 -34.62013 -32.74600 -31.59784 -28.96669 -25.65524 -24.94345 -23.49461 -22.83805 -22.11246 -20.58321 -19.02246 -18.38317 -17.00323 -16.67793 -16.49775 -16.09393 -15.47982 -15.26906 -14.84843 -14.60070 -14.51657 -13.93281 -13.35082 -12.98507 -12.84677 -12.58523 -12.51628 -12.14047 -12.02881 -11.82453 -11.70875 -11.57572 -11.38002 -10.72691 -10.61651 -10.40470 -10.18104 -9.70046 -8.74456 -8.01697 -6.14227 -0.41387 0.38375 0.47479 0.88404 1.26496 1.42838 1.48183 1.56116 2.47007 2.81890 3.25642 3.37045 3.50452 3.72034 4.13958 4.29405 4.38995 4.44148 4.54529 4.59719 4.66742 4.82068 4.96418 5.02139 5.05861 5.16636 5.35578 5.39347 5.53944 5.56677 5.60486 5.70113 5.87291 5.96068 6.08105 6.39055 6.93370 7.52619 9.01905 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.025736 B = 0.005987 C = 0.005406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.711328 B = 4675.400992 C = 5177.738130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.028 3.972 3 Si 0.940 3.060 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.286 1.286 7 C -0.527 4.527 8 H 0.051 0.949 9 C 0.111 3.889 10 H 0.013 0.987 11 C -0.047 4.047 12 C -0.064 4.064 13 C -0.088 4.088 14 C -0.154 4.154 15 S 0.157 5.843 16 N -0.467 5.467 17 C 0.144 3.856 18 C -0.147 4.147 19 C -0.068 4.068 20 C -0.098 4.098 21 C -0.193 4.193 22 C -0.144 4.144 23 H 0.258 0.742 24 H 0.133 0.867 25 H 0.151 0.849 26 H 0.220 0.780 27 H 0.137 0.863 28 H 0.069 0.931 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.072 0.928 32 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.878 -9.610 -0.805 10.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.173 4.173 3 Si 0.767 3.233 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.212 1.212 7 C -0.565 4.565 8 H 0.070 0.930 9 C 0.092 3.908 10 H 0.031 0.969 11 C -0.049 4.049 12 C -0.086 4.086 13 C -0.111 4.111 14 C -0.274 4.274 15 S 0.308 5.692 16 N -0.277 5.277 17 C -0.066 4.066 18 C -0.158 4.158 19 C -0.090 4.090 20 C -0.117 4.117 21 C -0.230 4.230 22 C -0.181 4.181 23 H 0.067 0.933 24 H 0.151 0.849 25 H 0.169 0.831 26 H 0.236 0.764 27 H 0.154 0.846 28 H 0.087 0.913 29 H 0.103 0.897 30 H 0.111 0.889 31 H 0.090 0.910 32 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.290 -11.294 -0.839 12.500 hybrid contribution -1.067 2.645 0.218 2.860 sum 4.224 -8.649 -0.621 9.645 Atomic orbital electron populations 1.70122 1.06513 1.26655 1.49799 1.25529 0.95531 1.01361 0.94909 0.85782 0.79227 0.80959 0.77283 1.19645 1.20954 1.21226 1.21282 0.92642 0.90861 1.51700 0.93048 1.17353 0.90772 0.89958 0.92676 0.96939 1.19971 0.96352 0.95185 0.93425 1.21055 0.93126 0.96302 0.98166 1.20158 1.00176 0.93297 0.97452 1.23523 1.01677 1.01909 1.00280 1.84512 1.42048 1.21794 1.20801 1.75855 1.13250 1.26515 1.12101 1.24311 0.94506 0.88172 0.99588 1.20547 1.00336 0.99198 0.95766 1.20667 0.97562 0.91984 0.98795 1.22013 0.92563 0.98059 0.99019 1.23057 1.06887 0.91376 1.01636 1.22369 0.96464 0.98876 1.00369 0.93294 0.84884 0.83086 0.76363 0.84555 0.91261 0.89739 0.88908 0.90950 0.91186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -47.19 11.44 21.45 0.25 -46.94 16 2 C 0.03 1.43 5.30 84.66 0.45 1.88 16 3 Si 0.94 41.31 29.54 68.60 2.03 43.34 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 5 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 6 H -0.29 -12.56 7.11 99.48 0.71 -11.86 16 7 C -0.53 -26.36 8.21 25.60 0.21 -26.15 16 8 H 0.05 2.59 7.60 -2.91 -0.02 2.57 16 9 C 0.11 4.94 2.08 -12.29 -0.03 4.91 16 10 H 0.01 0.62 7.57 -2.38 -0.02 0.60 16 11 C -0.05 -1.79 4.34 -20.20 -0.09 -1.88 16 12 C -0.06 -2.20 8.73 22.09 0.19 -2.01 16 13 C -0.09 -2.64 10.02 22.04 0.22 -2.41 16 14 C -0.15 -4.73 6.71 23.03 0.15 -4.58 16 15 S 0.16 4.42 23.86 -56.49 -1.35 3.07 16 16 N -0.47 -13.42 11.90 -55.95 -0.67 -14.09 16 17 C 0.14 3.75 11.46 86.87 1.00 4.74 16 18 C -0.15 -4.50 6.12 -20.20 -0.12 -4.62 16 19 C -0.07 -2.26 9.66 22.49 0.22 -2.04 16 20 C -0.10 -4.14 3.83 -10.77 -0.04 -4.18 16 21 C -0.19 -6.83 9.86 30.60 0.30 -6.53 16 22 C -0.14 -5.87 9.06 30.62 0.28 -5.59 16 23 H 0.26 13.19 8.31 -92.71 -0.77 12.42 16 24 H 0.13 4.55 8.03 -2.91 -0.02 4.53 16 25 H 0.15 3.60 8.06 -2.91 -0.02 3.57 16 26 H 0.22 3.89 8.06 -2.91 -0.02 3.87 16 27 H 0.14 4.16 7.88 -2.91 -0.02 4.13 16 28 H 0.07 3.11 8.11 -2.39 -0.02 3.09 16 29 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 30 H 0.09 2.91 8.14 -2.39 -0.02 2.89 16 31 H 0.07 2.88 8.14 -2.38 -0.02 2.86 16 32 H 0.07 3.07 8.05 -2.39 -0.02 3.05 16 Total: -1.00 -55.30 289.53 4.12 -51.19 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: 1.12 Total: 11.90 kcal Atomic # 6 Polarization: -51.20 SS G_CDS: 2.74 Total: -48.46 kcal Atomic # 7 Polarization: -60.61 SS G_CDS: -0.42 Total: -61.03 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.34 kcal Atomic # 16 Polarization: 4.42 SS G_CDS: -1.35 Total: 3.07 kcal Total: -55.30 4.12 -51.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260849992.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.706 kcal (2) G-P(sol) polarization free energy of solvation -55.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds