Wall clock time and date at job start Mon Mar 30 2020 07:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.76191 * 103.00069 * 2 1 4 4 C 1.38861 * 120.06079 * 359.72522 * 3 2 1 5 5 C 1.38156 * 119.96482 * 179.74599 * 4 3 2 6 6 C 1.38468 * 120.09243 * 0.54978 * 5 4 3 7 7 F 1.35101 * 119.93658 * 179.72325 * 6 5 4 8 8 C 1.38470 * 120.12033 * 359.70449 * 6 5 4 9 9 C 1.50707 * 119.98411 * 180.02562 * 8 6 5 10 10 H 1.08996 * 109.47374 * 164.97935 * 9 8 6 11 11 N 1.46896 * 109.46927 * 44.97711 * 9 8 6 12 12 C 1.50697 * 109.46826 * 284.97779 * 9 8 6 13 13 H 1.08000 * 120.00717 * 5.25320 * 12 9 8 14 14 C 1.37884 * 120.00006 * 185.25202 * 12 9 8 15 15 N 1.31519 * 119.99557 * 7.08071 * 14 12 9 16 16 Si 1.86799 * 120.00385 * 187.08020 * 14 12 9 17 17 H 1.48500 * 109.46802 * 84.96057 * 16 14 12 18 18 H 1.48499 * 109.47063 * 204.96275 * 16 14 12 19 19 H 1.48497 * 109.46903 * 324.96274 * 16 14 12 20 20 C 1.38268 * 120.03548 * 0.02562 * 8 6 5 21 21 F 1.35106 * 120.04958 * 179.97438 * 20 8 6 22 22 H 1.08993 * 109.47594 * 59.99862 * 1 2 3 23 23 H 1.08999 * 109.46908 * 299.99852 * 1 2 3 24 24 H 1.08997 * 109.47579 * 180.02562 * 1 2 3 25 25 H 1.07995 * 120.01706 * 0.02562 * 4 3 2 26 26 H 1.08002 * 119.94970 * 180.25649 * 5 4 3 27 27 H 1.00906 * 110.99920 * 172.36419 * 11 9 8 28 28 H 1.00900 * 111.00135 * 296.31570 * 11 9 8 29 29 H 0.97003 * 119.99874 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7167 0.0000 4 6 1.1958 2.6649 -0.0058 5 6 1.5088 4.0105 -0.0004 6 6 2.8330 4.4153 -0.0009 7 9 3.1356 5.7320 -0.0013 8 6 3.8477 3.4730 -0.0004 9 6 5.2879 3.9170 -0.0003 10 1 5.9275 3.0756 0.2663 11 7 5.4670 4.9977 0.9783 12 6 5.6599 4.4155 -1.3729 13 1 4.9062 4.4911 -2.1427 14 6 6.9627 4.7751 -1.6462 15 7 7.9062 4.5535 -0.7571 16 14 7.3875 5.5771 -3.2789 17 1 7.1519 7.0404 -3.1877 18 1 8.8157 5.3245 -3.5976 19 1 6.5326 5.0038 -4.3492 20 6 3.5403 2.1249 -0.0001 21 9 4.5300 1.2053 -0.0002 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 0.1626 2.3505 -0.0098 26 1 0.7196 4.7477 -0.0007 27 1 6.4432 5.2281 1.0880 28 1 4.9301 5.8120 0.7201 29 1 8.8226 4.8068 -0.9491 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260853890.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:39 Heat of formation + Delta-G solvation = -86.399486 kcal Electronic energy + Delta-G solvation = -17267.568235 eV Core-core repulsion = 14144.887247 eV Total energy + Delta-G solvation = -3122.680987 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.054 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.95196 -49.87198 -39.81304 -36.74284 -33.75032 -31.53901 -31.33484 -29.65598 -27.96092 -25.09138 -23.91032 -22.36679 -19.15193 -18.96526 -18.31307 -18.21244 -16.93527 -16.81170 -16.50054 -16.29841 -15.87745 -15.81707 -15.13737 -14.85488 -14.48723 -14.45341 -13.92324 -13.83390 -13.45049 -13.27827 -12.99952 -12.98963 -12.67874 -12.59656 -12.06289 -11.54097 -11.23001 -10.76129 -10.49847 -9.86555 -9.32351 -8.37492 -8.22822 -6.45710 -0.12428 0.08286 0.44290 1.34243 1.34510 1.45091 1.48450 2.27205 2.39088 2.96949 3.01916 3.45673 3.64331 3.94361 4.07517 4.35221 4.36264 4.44577 4.67053 4.77598 4.88115 4.93892 5.01816 5.06237 5.39081 5.54235 5.78336 5.93021 6.54181 6.67947 6.98456 7.26523 8.76491 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.027185 B = 0.006814 C = 0.006230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.750988 B = 4108.100083 C = 4493.505099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 S -0.141 6.141 3 C -0.134 4.134 4 C -0.084 4.084 5 C -0.130 4.130 6 C 0.110 3.890 7 F -0.132 7.132 8 C -0.113 4.113 9 C 0.245 3.755 10 H 0.018 0.982 11 N -0.846 5.846 12 C -0.563 4.563 13 H 0.046 0.954 14 C 0.024 3.976 15 N -0.913 5.913 16 Si 0.963 3.037 17 H -0.269 1.269 18 H -0.279 1.279 19 H -0.272 1.272 20 C 0.105 3.895 21 F -0.141 7.141 22 H 0.101 0.899 23 H 0.103 0.897 24 H 0.131 0.869 25 H 0.186 0.814 26 H 0.181 0.819 27 H 0.339 0.661 28 H 0.329 0.671 29 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.564 -4.625 1.006 18.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.303 4.303 2 S 0.100 5.900 3 C -0.247 4.247 4 C -0.107 4.107 5 C -0.150 4.150 6 C 0.088 3.912 7 F -0.110 7.110 8 C -0.117 4.117 9 C 0.135 3.865 10 H 0.037 0.963 11 N -0.376 5.376 12 C -0.602 4.602 13 H 0.065 0.935 14 C -0.178 4.178 15 N -0.551 5.551 16 Si 0.787 3.213 17 H -0.194 1.194 18 H -0.204 1.204 19 H -0.197 1.197 20 C 0.080 3.920 21 F -0.120 7.120 22 H 0.120 0.880 23 H 0.122 0.878 24 H 0.149 0.851 25 H 0.203 0.797 26 H 0.198 0.802 27 H 0.151 0.849 28 H 0.143 0.857 29 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -17.007 -6.176 1.584 18.162 hybrid contribution 1.062 2.043 -1.537 2.768 sum -15.944 -4.133 0.047 16.472 Atomic orbital electron populations 1.23889 0.89957 1.09103 1.07343 1.85854 1.11348 1.00211 1.92548 1.21900 0.93623 1.00187 1.08999 1.21206 0.99318 0.90499 0.99675 1.21416 0.93728 0.97920 1.01965 1.17433 0.93307 0.77305 1.03202 1.91344 1.93806 1.32158 1.93704 1.20365 0.98505 0.91845 1.00959 1.17619 0.86390 0.91954 0.90547 0.96349 1.59503 1.15208 1.12736 1.50158 1.21843 0.94866 1.45425 0.98086 0.93540 1.25793 0.95735 0.95451 1.00772 1.69999 1.01539 1.46517 1.37027 0.85505 0.77357 0.79084 0.79346 1.19392 1.20394 1.19674 1.16927 0.84262 0.85225 1.05629 1.91441 1.61415 1.65212 1.93902 0.87998 0.87838 0.85111 0.79664 0.80194 0.84881 0.85699 0.92168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.15 113.37 1.04 -0.64 15 2 S -0.14 -3.71 22.17 -56.49 -1.25 -4.96 15 3 C -0.13 -4.34 6.11 22.63 0.14 -4.20 15 4 C -0.08 -2.05 9.36 22.40 0.21 -1.84 15 5 C -0.13 -3.58 10.02 22.31 0.22 -3.35 15 6 C 0.11 4.28 7.01 22.38 0.16 4.43 15 7 F -0.13 -5.37 14.36 44.97 0.65 -4.72 15 8 C -0.11 -5.24 4.90 -19.80 -0.10 -5.33 15 9 C 0.25 13.37 2.64 43.43 0.11 13.48 15 10 H 0.02 1.15 7.23 -2.39 -0.02 1.13 15 11 N -0.85 -43.43 9.03 -174.96 -1.58 -45.01 15 12 C -0.56 -32.24 8.55 25.60 0.22 -32.02 15 13 H 0.05 2.68 7.75 -2.91 -0.02 2.65 15 14 C 0.02 1.33 5.35 84.66 0.45 1.79 15 15 N -0.91 -53.13 12.22 21.45 0.26 -52.87 15 16 Si 0.96 44.33 29.54 68.60 2.03 46.35 15 17 H -0.27 -11.92 7.11 99.48 0.71 -11.21 15 18 H -0.28 -12.47 7.11 99.48 0.71 -11.77 15 19 H -0.27 -12.36 7.11 99.48 0.71 -11.66 15 20 C 0.10 4.52 7.22 22.49 0.16 4.68 15 21 F -0.14 -6.73 15.75 44.97 0.71 -6.02 15 22 H 0.10 0.99 7.73 -2.39 -0.02 0.97 15 23 H 0.10 0.97 7.76 -2.39 -0.02 0.95 15 24 H 0.13 1.10 8.14 -2.39 -0.02 1.08 15 25 H 0.19 2.61 5.87 -2.91 -0.02 2.59 15 26 H 0.18 3.37 8.06 -2.91 -0.02 3.35 15 27 H 0.34 18.32 7.87 -89.69 -0.71 17.61 15 28 H 0.33 16.10 6.24 -89.69 -0.56 15.54 15 29 H 0.27 14.77 8.31 -92.71 -0.77 14.00 15 Total: -1.00 -68.36 269.67 3.38 -64.98 By element: Atomic # 1 Polarization: 25.30 SS G_CDS: -0.05 Total: 25.25 kcal Atomic # 6 Polarization: -25.62 SS G_CDS: 2.62 Total: -23.00 kcal Atomic # 7 Polarization: -96.56 SS G_CDS: -1.32 Total: -97.88 kcal Atomic # 9 Polarization: -12.10 SS G_CDS: 1.35 Total: -10.74 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.35 kcal Atomic # 16 Polarization: -3.71 SS G_CDS: -1.25 Total: -4.96 kcal Total: -68.36 3.38 -64.98 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260853890.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.415 kcal (2) G-P(sol) polarization free energy of solvation -68.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds