Wall clock time and date at job start Mon Mar 30 2020 07:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.76203 * 102.99998 * 2 1 4 4 C 1.38858 * 120.05863 * 0.02562 * 3 2 1 5 5 C 1.38149 * 119.96499 * 179.97438 * 4 3 2 6 6 C 1.38467 * 120.09282 * 359.97438 * 5 4 3 7 7 F 1.35100 * 119.93977 * 180.02562 * 6 5 4 8 8 C 1.38484 * 120.12034 * 0.03994 * 6 5 4 9 9 C 1.50703 * 119.98282 * 179.97438 * 8 6 5 10 10 H 1.08998 * 109.47145 * 194.99983 * 9 8 6 11 11 N 1.46900 * 109.47047 * 315.00207 * 9 8 6 12 12 C 1.50700 * 109.47148 * 74.99962 * 9 8 6 13 13 H 1.08002 * 119.99770 * 0.02562 * 12 9 8 14 14 C 1.37871 * 120.00083 * 179.97438 * 12 9 8 15 15 N 1.31514 * 120.00147 * 0.02562 * 14 12 9 16 16 Si 1.86803 * 120.00278 * 180.02562 * 14 12 9 17 17 H 1.48494 * 109.47228 * 179.97438 * 16 14 12 18 18 H 1.48501 * 109.46793 * 300.00001 * 16 14 12 19 19 H 1.48500 * 109.47000 * 60.00094 * 16 14 12 20 20 C 1.38269 * 120.03075 * 0.25292 * 8 6 5 21 21 F 1.35098 * 120.04647 * 179.72548 * 20 8 6 22 22 H 1.08997 * 109.47484 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.46727 * 299.99920 * 1 2 3 24 24 H 1.09004 * 109.47245 * 59.99604 * 1 2 3 25 25 H 1.08001 * 120.01926 * 359.97438 * 4 3 2 26 26 H 1.08006 * 119.95372 * 179.97438 * 5 4 3 27 27 H 1.00907 * 110.99867 * 296.04432 * 11 9 8 28 28 H 1.00896 * 111.00376 * 59.99771 * 11 9 8 29 29 H 0.97005 * 119.99661 * 359.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 1.1958 2.6649 0.0005 5 6 1.5088 4.0105 0.0011 6 6 2.8330 4.4153 0.0016 7 9 3.1355 5.7320 0.0027 8 6 3.8478 3.4730 0.0008 9 6 5.2879 3.9170 0.0008 10 1 5.9275 3.0757 -0.2659 11 7 5.4670 4.9978 -0.9778 12 6 5.6598 4.4155 1.3734 13 1 4.9268 4.4109 2.1666 14 6 6.9361 4.8766 1.6170 15 7 7.8289 4.8818 0.6513 16 14 7.3975 5.4939 3.3186 17 1 8.8168 5.9304 3.3189 18 1 6.5264 6.6403 3.6822 19 1 7.2160 4.4011 4.3076 20 6 3.5403 2.1249 -0.0059 21 9 4.5300 1.2054 -0.0123 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 0.1626 2.3506 0.0005 26 1 0.7195 4.7477 0.0011 27 1 5.2859 4.6707 -1.9151 28 1 4.8842 5.7900 -0.7525 29 1 7.5894 4.5609 -0.2323 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260853898.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:42 Heat of formation + Delta-G solvation = -63.714521 kcal Electronic energy + Delta-G solvation = -17320.406008 eV Core-core repulsion = 14198.708715 eV Total energy + Delta-G solvation = -3121.697293 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.054 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.59070 -48.53256 -38.59390 -35.10271 -31.67245 -30.24257 -30.03447 -28.83483 -25.65536 -23.25284 -22.61093 -20.93291 -17.92077 -17.45891 -17.05418 -16.60302 -15.57628 -15.30253 -14.92212 -14.88995 -14.51412 -14.03554 -13.87941 -13.79654 -13.56991 -13.03247 -12.76459 -12.56090 -12.07446 -11.91860 -11.46162 -11.31950 -10.71479 -10.36395 -10.28339 -10.03151 -9.44064 -9.02881 -8.35545 -8.19604 -7.57564 -7.32687 -6.20119 -4.03491 1.07919 1.28649 1.40258 2.30207 3.48206 3.50808 3.54605 3.69481 4.23040 4.60441 4.65390 4.80829 4.84720 4.85815 5.04478 5.32032 5.43731 5.45059 5.79978 5.94880 6.05700 6.08951 6.24059 6.30277 7.00944 7.07647 7.88734 8.23033 8.59635 8.73332 9.01864 9.79779 11.20380 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.027138 B = 0.006824 C = 0.006273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.534448 B = 4102.202731 C = 4462.472200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 S -0.099 6.099 3 C -0.139 4.139 4 C -0.102 4.102 5 C -0.150 4.150 6 C 0.125 3.875 7 F -0.120 7.120 8 C -0.122 4.122 9 C 0.242 3.758 10 H 0.049 0.951 11 N -0.833 5.833 12 C -0.608 4.608 13 H 0.046 0.954 14 C 0.041 3.959 15 N -0.886 5.886 16 Si 1.065 2.935 17 H -0.282 1.282 18 H -0.289 1.289 19 H -0.289 1.289 20 C 0.143 3.857 21 F -0.119 7.119 22 H 0.108 0.892 23 H 0.084 0.916 24 H 0.083 0.917 25 H 0.135 0.865 26 H 0.138 0.862 27 H 0.301 0.699 28 H 0.336 0.664 29 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.848 -6.193 -2.552 17.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.317 4.317 2 S 0.142 5.858 3 C -0.253 4.253 4 C -0.126 4.126 5 C -0.171 4.171 6 C 0.103 3.897 7 F -0.098 7.098 8 C -0.128 4.128 9 C 0.132 3.868 10 H 0.067 0.933 11 N -0.364 5.364 12 C -0.647 4.647 13 H 0.064 0.936 14 C -0.169 4.169 15 N -0.519 5.519 16 Si 0.894 3.106 17 H -0.207 1.207 18 H -0.215 1.215 19 H -0.216 1.216 20 C 0.117 3.883 21 F -0.097 7.097 22 H 0.126 0.874 23 H 0.103 0.897 24 H 0.102 0.898 25 H 0.153 0.847 26 H 0.156 0.844 27 H 0.111 0.889 28 H 0.154 0.846 29 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -13.121 -6.568 -1.443 14.744 hybrid contribution -3.081 0.416 -1.030 3.275 sum -16.202 -6.152 -2.473 17.506 Atomic orbital electron populations 1.23695 0.95422 1.07008 1.05601 1.85658 1.05439 1.01763 1.92905 1.21733 0.94925 0.98114 1.10485 1.20602 0.97793 0.91598 1.02570 1.20983 0.94937 0.96479 1.04679 1.17197 0.92189 0.78106 1.02245 1.91394 1.93456 1.31540 1.93445 1.21714 1.01970 0.90593 0.98520 1.18375 0.82669 0.91545 0.94209 0.93287 1.59481 1.63533 1.10198 1.03158 1.21569 0.99937 1.50110 0.93090 0.93573 1.25637 0.92422 0.94251 1.04622 1.70548 1.36543 1.40321 1.04532 0.83626 0.76197 0.76337 0.74448 1.20740 1.21537 1.21565 1.16638 0.82838 0.85950 1.02871 1.91514 1.60152 1.64644 1.93369 0.87379 0.89716 0.89783 0.84695 0.84410 0.88871 0.84614 0.89737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.15 101.05 0.92 -0.32 15 2 S -0.10 -1.35 22.17 -107.50 -2.38 -3.73 15 3 C -0.14 -2.29 6.11 -39.03 -0.24 -2.52 15 4 C -0.10 -1.42 9.36 -39.38 -0.37 -1.78 15 5 C -0.15 -2.26 10.02 -39.53 -0.40 -2.66 15 6 C 0.12 2.39 7.01 -39.41 -0.28 2.12 15 7 F -0.12 -2.42 14.30 2.25 0.03 -2.39 15 8 C -0.12 -2.64 4.88 -104.52 -0.51 -3.15 15 9 C 0.24 6.15 2.31 -70.01 -0.16 5.99 15 10 H 0.05 1.36 7.13 -51.93 -0.37 0.99 15 11 N -0.83 -19.89 7.67 -6.65 -0.05 -19.94 15 12 C -0.61 -17.35 8.63 -34.44 -0.30 -17.65 15 13 H 0.05 1.33 7.74 -52.49 -0.41 0.93 15 14 C 0.04 1.19 5.39 -17.82 -0.10 1.10 15 15 N -0.89 -27.16 13.51 55.43 0.75 -26.41 15 16 Si 1.07 25.75 29.90 -169.99 -5.08 20.67 15 17 H -0.28 -6.80 7.11 56.52 0.40 -6.40 15 18 H -0.29 -6.72 7.11 56.52 0.40 -6.32 15 19 H -0.29 -6.71 7.11 56.52 0.40 -6.31 15 20 C 0.14 2.88 7.22 -39.25 -0.28 2.59 15 21 F -0.12 -2.55 15.75 2.25 0.04 -2.52 15 22 H 0.11 0.70 8.14 -51.93 -0.42 0.28 15 23 H 0.08 0.65 7.75 -51.92 -0.40 0.25 15 24 H 0.08 0.62 7.75 -51.92 -0.40 0.21 15 25 H 0.14 1.37 5.87 -52.49 -0.31 1.06 15 26 H 0.14 1.63 8.06 -52.48 -0.42 1.21 15 27 H 0.30 6.34 9.06 -39.29 -0.36 5.98 15 28 H 0.34 7.88 6.12 -39.29 -0.24 7.64 15 29 H 0.29 8.90 6.39 -40.82 -0.26 8.64 15 LS Contribution 268.70 15.07 4.05 4.05 Total: -1.00 -31.66 268.70 -6.74 -38.41 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -2.39 Total: 8.16 kcal Atomic # 6 Polarization: -14.60 SS G_CDS: -1.70 Total: -16.30 kcal Atomic # 7 Polarization: -47.05 SS G_CDS: 0.70 Total: -46.35 kcal Atomic # 9 Polarization: -4.97 SS G_CDS: 0.07 Total: -4.90 kcal Atomic # 14 Polarization: 25.75 SS G_CDS: -5.08 Total: 20.67 kcal Atomic # 16 Polarization: -1.35 SS G_CDS: -2.38 Total: -3.73 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -31.66 -6.74 -38.41 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260853898.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.309 kcal (2) G-P(sol) polarization free energy of solvation -31.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds