Wall clock time and date at job start Mon Mar 30 2020 07:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86806 * 119.99890 * 2 1 4 4 H 1.48495 * 109.47183 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46895 * 300.00340 * 3 2 1 6 6 H 1.48493 * 109.47126 * 60.00244 * 3 2 1 7 7 C 1.37873 * 120.00374 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00392 * 174.92188 * 7 2 1 9 9 C 1.50704 * 119.99621 * 355.19923 * 7 2 1 10 10 H 1.08997 * 109.47269 * 334.79141 * 9 7 2 11 11 C 1.50699 * 109.47096 * 94.78972 * 9 7 2 12 12 C 1.38797 * 119.60893 * 59.72216 * 11 9 7 13 13 C 1.37655 * 120.06300 * 179.78440 * 12 11 9 14 14 C 1.39340 * 119.95283 * 0.44949 * 13 12 11 15 15 S 1.76083 * 131.72563 * 179.80773 * 14 13 12 16 16 C 1.70654 * 90.82284 * 179.97438 * 15 14 13 17 17 N 1.27933 * 111.52135 * 359.97438 * 16 15 14 18 18 C 1.34665 * 117.84905 * 359.97438 * 17 16 15 19 19 C 1.36178 * 119.61381 * 240.00063 * 11 9 7 20 20 C 1.53002 * 109.46937 * 214.78718 * 9 7 2 21 21 C 1.53001 * 117.49567 * 133.98300 * 20 9 7 22 22 C 1.52996 * 60.00077 * 252.51216 * 21 20 9 23 23 H 0.97002 * 119.99945 * 359.97438 * 1 2 3 24 24 H 1.08001 * 119.96803 * 0.02590 * 12 11 9 25 25 H 1.08000 * 120.02252 * 180.25664 * 13 12 11 26 26 H 1.07992 * 124.23546 * 179.97438 * 16 15 14 27 27 H 1.08007 * 119.77985 * 359.97438 * 19 11 9 28 28 H 1.08998 * 115.55047 * 279.68900 * 20 9 7 29 29 H 1.09001 * 117.49873 * 359.97438 * 21 20 9 30 30 H 1.08996 * 117.49841 * 145.01797 * 21 20 9 31 31 H 1.09003 * 117.50282 * 252.51700 * 22 21 20 32 32 H 1.08998 * 117.52461 * 107.48169 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0814 -1.1958 -0.0833 9 6 1.2550 -2.4969 0.1081 10 1 0.3023 -2.3272 0.6096 11 6 1.0051 -3.0492 -1.2716 12 6 2.0808 -3.3380 -2.0998 13 6 1.8635 -3.8470 -3.3602 14 6 0.5619 -4.0636 -3.8081 15 16 -0.0650 -4.6848 -5.3318 16 6 -1.6675 -4.5127 -4.7709 17 7 -1.7005 -4.0442 -3.5809 18 6 -0.5269 -3.7715 -2.9794 19 6 -0.2735 -3.2537 -1.6931 20 6 2.0852 -3.4971 0.9152 21 6 1.3670 -4.2930 2.0068 22 6 2.3405 -3.1763 2.3893 23 1 -0.4850 0.8401 0.0004 24 1 3.0894 -3.1668 -1.7537 25 1 2.7011 -4.0753 -4.0026 26 1 -2.5439 -4.7674 -5.3482 27 1 -1.0987 -3.0195 -1.0368 28 1 2.8798 -4.0008 0.3648 29 1 0.3032 -4.1037 2.1502 30 1 1.6889 -5.3207 2.1746 31 1 3.3029 -3.4694 2.8087 32 1 1.9174 -2.2526 2.7840 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260867247.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:15 Heat of formation + Delta-G solvation = 71.478042 kcal Electronic energy + Delta-G solvation = -16507.280018 eV Core-core repulsion = 13945.674644 eV Total energy + Delta-G solvation = -2561.605374 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.80883 -37.46640 -35.75911 -32.94270 -30.92719 -29.61127 -27.15528 -24.56419 -23.66984 -21.91324 -21.55582 -20.71202 -19.04601 -17.86255 -16.49463 -15.81172 -15.30290 -14.93598 -14.66643 -14.22154 -13.80765 -13.47469 -13.14008 -12.91422 -12.31226 -11.62001 -11.48754 -11.23691 -11.15916 -10.91896 -10.77671 -10.59531 -10.31764 -10.05062 -9.63387 -9.34108 -9.28460 -9.23087 -8.76953 -8.58616 -7.93768 -7.42120 -6.13962 -4.18015 0.96971 1.70370 1.94100 2.12586 2.94082 3.24011 3.33016 3.35689 4.30714 4.44443 4.48296 4.74196 5.17855 5.20673 5.49772 5.64611 5.72219 5.85073 5.86340 5.95065 6.17127 6.28596 6.40987 6.47748 6.58532 6.73227 6.75287 6.89832 6.97630 7.11022 7.34860 7.56606 7.69728 7.83914 8.06084 8.23034 8.88813 9.45902 10.93719 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.019869 B = 0.006906 C = 0.005935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.923370 B = 4053.426165 C = 4716.922964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.066 3.934 3 Si 0.891 3.109 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.283 1.283 7 C -0.502 4.502 8 H 0.060 0.940 9 C 0.093 3.907 10 H 0.069 0.931 11 C -0.008 4.008 12 C -0.075 4.075 13 C -0.095 4.095 14 C -0.186 4.186 15 S 0.041 5.959 16 C 0.050 3.950 17 N -0.457 5.457 18 C 0.070 3.930 19 C -0.063 4.063 20 C -0.121 4.121 21 C -0.201 4.201 22 C -0.169 4.169 23 H 0.263 0.737 24 H 0.130 0.870 25 H 0.119 0.881 26 H 0.195 0.805 27 H 0.128 0.872 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.351 -8.432 -5.498 10.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.137 4.137 3 Si 0.719 3.281 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.209 1.209 7 C -0.540 4.540 8 H 0.079 0.921 9 C 0.075 3.925 10 H 0.087 0.913 11 C -0.011 4.011 12 C -0.096 4.096 13 C -0.118 4.118 14 C -0.303 4.303 15 S 0.292 5.708 16 C -0.255 4.255 17 N -0.169 5.169 18 C -0.048 4.048 19 C -0.084 4.084 20 C -0.139 4.139 21 C -0.238 4.238 22 C -0.206 4.206 23 H 0.073 0.927 24 H 0.148 0.852 25 H 0.137 0.863 26 H 0.211 0.789 27 H 0.146 0.854 28 H 0.103 0.897 29 H 0.105 0.895 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.001 -8.575 -6.178 10.616 hybrid contribution 0.374 1.370 0.571 1.530 sum 1.375 -7.205 -5.607 9.233 Atomic orbital electron populations 1.69931 1.05953 1.26935 1.49056 1.25009 0.94862 0.99365 0.94468 0.86541 0.80262 0.83652 0.77655 1.19551 1.21078 1.20863 1.20927 0.93165 0.89139 1.50747 0.92134 1.17727 0.97289 0.91122 0.86395 0.91287 1.20321 0.90881 0.90265 0.99683 1.21095 1.00019 0.96169 0.92288 1.20200 0.92866 1.02012 0.96735 1.23506 0.99324 1.10472 0.97037 1.83550 1.03157 1.66947 1.17141 1.27819 1.00621 1.02183 0.94901 1.66142 1.29135 1.12805 1.08824 1.19261 0.85151 1.03597 0.96787 1.20336 0.97906 0.98160 0.91995 1.22470 1.00907 1.00010 0.90544 1.22990 0.98238 0.95539 1.06996 1.22706 0.99086 0.99369 0.99455 0.92713 0.85220 0.86307 0.78883 0.85366 0.89704 0.89471 0.90479 0.90491 0.88657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.35 12.84 55.43 0.71 -23.64 16 2 C 0.07 1.75 5.45 -17.82 -0.10 1.65 16 3 Si 0.89 20.56 29.54 -169.99 -5.02 15.54 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.50 -12.61 7.69 -34.44 -0.26 -12.88 16 8 H 0.06 1.51 7.82 -52.49 -0.41 1.10 16 9 C 0.09 2.13 2.12 -92.92 -0.20 1.93 16 10 H 0.07 1.76 6.86 -51.93 -0.36 1.41 16 11 C -0.01 -0.18 4.73 -105.16 -0.50 -0.68 16 12 C -0.07 -1.45 8.63 -39.59 -0.34 -1.79 16 13 C -0.10 -1.69 10.07 -39.38 -0.40 -2.09 16 14 C -0.19 -3.46 6.56 -38.55 -0.25 -3.71 16 15 S 0.04 0.60 23.17 -107.50 -2.49 -1.89 16 16 C 0.05 0.75 12.10 51.14 0.62 1.37 16 17 N -0.46 -8.78 10.57 -12.96 -0.14 -8.92 16 18 C 0.07 1.44 7.00 -84.97 -0.59 0.85 16 19 C -0.06 -1.38 9.66 -39.29 -0.38 -1.76 16 20 C -0.12 -2.36 4.93 -90.62 -0.45 -2.81 16 21 C -0.20 -3.51 10.18 -26.73 -0.27 -3.78 16 22 C -0.17 -3.08 10.01 -26.73 -0.27 -3.35 16 23 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 24 H 0.13 2.32 7.79 -52.49 -0.41 1.91 16 25 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 26 H 0.19 2.01 8.06 -52.49 -0.42 1.59 16 27 H 0.13 2.94 7.88 -52.48 -0.41 2.52 16 28 H 0.08 1.56 7.41 -51.93 -0.38 1.17 16 29 H 0.09 1.56 8.08 -51.93 -0.42 1.14 16 30 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 31 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16 LS Contribution 291.25 15.07 4.39 4.39 Total: -1.00 -28.20 291.25 -9.58 -37.78 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -3.64 Total: 3.77 kcal Atomic # 6 Polarization: -23.65 SS G_CDS: -3.39 Total: -27.04 kcal Atomic # 7 Polarization: -33.13 SS G_CDS: 0.57 Total: -32.55 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Atomic # 16 Polarization: 0.60 SS G_CDS: -2.49 Total: -1.89 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -28.20 -9.58 -37.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260867247.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.258 kcal (2) G-P(sol) polarization free energy of solvation -28.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds