Wall clock time and date at job start Mon Mar 30 2020 07:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86806 * 119.99890 * 2 1 4 4 H 1.48495 * 109.47183 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46895 * 300.00340 * 3 2 1 6 6 H 1.48493 * 109.47126 * 60.00244 * 3 2 1 7 7 C 1.37873 * 120.00374 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00392 * 174.92188 * 7 2 1 9 9 C 1.50704 * 119.99621 * 355.19923 * 7 2 1 10 10 H 1.08997 * 109.47269 * 334.79141 * 9 7 2 11 11 C 1.50699 * 109.47096 * 94.78972 * 9 7 2 12 12 C 1.38797 * 119.60893 * 59.72216 * 11 9 7 13 13 C 1.37655 * 120.06300 * 179.78440 * 12 11 9 14 14 C 1.39340 * 119.95283 * 0.44949 * 13 12 11 15 15 S 1.76083 * 131.72563 * 179.80773 * 14 13 12 16 16 C 1.70654 * 90.82284 * 179.97438 * 15 14 13 17 17 N 1.27933 * 111.52135 * 359.97438 * 16 15 14 18 18 C 1.34665 * 117.84905 * 359.97438 * 17 16 15 19 19 C 1.36178 * 119.61381 * 240.00063 * 11 9 7 20 20 C 1.53002 * 109.46937 * 214.78718 * 9 7 2 21 21 C 1.53001 * 117.49567 * 133.98300 * 20 9 7 22 22 C 1.52996 * 60.00077 * 252.51216 * 21 20 9 23 23 H 0.97002 * 119.99945 * 359.97438 * 1 2 3 24 24 H 1.08001 * 119.96803 * 0.02590 * 12 11 9 25 25 H 1.08000 * 120.02252 * 180.25664 * 13 12 11 26 26 H 1.07992 * 124.23546 * 179.97438 * 16 15 14 27 27 H 1.08007 * 119.77985 * 359.97438 * 19 11 9 28 28 H 1.08998 * 115.55047 * 279.68900 * 20 9 7 29 29 H 1.09001 * 117.49873 * 359.97438 * 21 20 9 30 30 H 1.08996 * 117.49841 * 145.01797 * 21 20 9 31 31 H 1.09003 * 117.50282 * 252.51700 * 22 21 20 32 32 H 1.08998 * 117.52461 * 107.48169 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0814 -1.1958 -0.0833 9 6 1.2550 -2.4969 0.1081 10 1 0.3023 -2.3272 0.6096 11 6 1.0051 -3.0492 -1.2716 12 6 2.0808 -3.3380 -2.0998 13 6 1.8635 -3.8470 -3.3602 14 6 0.5619 -4.0636 -3.8081 15 16 -0.0650 -4.6848 -5.3318 16 6 -1.6675 -4.5127 -4.7709 17 7 -1.7005 -4.0442 -3.5809 18 6 -0.5269 -3.7715 -2.9794 19 6 -0.2735 -3.2537 -1.6931 20 6 2.0852 -3.4971 0.9152 21 6 1.3670 -4.2930 2.0068 22 6 2.3405 -3.1763 2.3893 23 1 -0.4850 0.8401 0.0004 24 1 3.0894 -3.1668 -1.7537 25 1 2.7011 -4.0753 -4.0026 26 1 -2.5439 -4.7674 -5.3482 27 1 -1.0987 -3.0195 -1.0368 28 1 2.8798 -4.0008 0.3648 29 1 0.3032 -4.1037 2.1502 30 1 1.6889 -5.3207 2.1746 31 1 3.3029 -3.4694 2.8087 32 1 1.9174 -2.2526 2.7840 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260867247.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:14 Heat of formation + Delta-G solvation = 56.825576 kcal Electronic energy + Delta-G solvation = -16507.915397 eV Core-core repulsion = 13945.674644 eV Total energy + Delta-G solvation = -2562.240753 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.25396 -39.00175 -37.21245 -34.80693 -32.55290 -31.11151 -28.86465 -26.01780 -25.39749 -23.39114 -23.01820 -22.18762 -20.64456 -19.25494 -18.36315 -17.25150 -16.77285 -16.63014 -16.28647 -15.64662 -15.21749 -15.00991 -14.68464 -14.33000 -14.07559 -13.27697 -13.13865 -12.84618 -12.79374 -12.60696 -12.33756 -12.22883 -11.77879 -11.75084 -11.23247 -11.00872 -10.73983 -10.59406 -10.53185 -10.38773 -9.41762 -8.83148 -8.11718 -6.21218 -0.39897 0.41881 0.44133 0.81239 1.39384 1.42483 1.52550 1.54938 2.41522 2.90338 3.12265 3.24784 3.29900 3.78174 4.07406 4.25305 4.36407 4.37756 4.41522 4.50971 4.60263 4.85853 4.91895 4.97183 5.05535 5.22861 5.23384 5.35333 5.46678 5.50030 5.73054 5.75353 5.95948 6.07286 6.33095 6.72860 6.92496 7.44964 8.94981 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.019869 B = 0.006906 C = 0.005935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.923370 B = 4053.426165 C = 4716.922964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.013 3.987 3 Si 0.948 3.052 4 H -0.258 1.258 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.499 4.499 8 H 0.064 0.936 9 C 0.096 3.904 10 H 0.026 0.974 11 C -0.019 4.019 12 C -0.091 4.091 13 C -0.079 4.079 14 C -0.216 4.216 15 S 0.128 5.872 16 C 0.063 3.937 17 N -0.507 5.507 18 C 0.056 3.944 19 C -0.096 4.096 20 C -0.136 4.136 21 C -0.187 4.187 22 C -0.166 4.166 23 H 0.258 0.742 24 H 0.143 0.857 25 H 0.158 0.842 26 H 0.241 0.759 27 H 0.096 0.904 28 H 0.103 0.897 29 H 0.072 0.928 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.071 -10.035 -7.741 13.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.186 4.186 3 Si 0.774 3.226 4 H -0.182 1.182 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.537 4.537 8 H 0.082 0.918 9 C 0.077 3.923 10 H 0.044 0.956 11 C -0.022 4.022 12 C -0.112 4.112 13 C -0.102 4.102 14 C -0.334 4.334 15 S 0.379 5.621 16 C -0.241 4.241 17 N -0.221 5.221 18 C -0.062 4.062 19 C -0.118 4.118 20 C -0.155 4.155 21 C -0.224 4.224 22 C -0.203 4.203 23 H 0.067 0.933 24 H 0.161 0.839 25 H 0.175 0.825 26 H 0.257 0.743 27 H 0.114 0.886 28 H 0.121 0.879 29 H 0.090 0.910 30 H 0.126 0.874 31 H 0.125 0.875 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.747 -10.193 -8.428 13.508 hybrid contribution -0.246 1.725 1.099 2.060 sum 2.501 -8.469 -7.329 11.475 Atomic orbital electron populations 1.70093 1.07416 1.27070 1.51383 1.25745 0.95458 1.02502 0.94903 0.85645 0.79715 0.80087 0.77112 1.18165 1.21643 1.20905 1.21238 0.93309 0.90164 1.48980 0.91821 1.17539 0.95502 0.91646 0.87610 0.95603 1.20198 0.91597 0.91206 0.99243 1.21194 0.99667 0.97262 0.93040 1.20583 0.93778 0.99584 0.96232 1.23974 0.99243 1.10735 0.99422 1.83242 1.01106 1.64634 1.13076 1.28732 1.03074 0.98602 0.93690 1.66190 1.29030 1.15910 1.10961 1.19323 0.86817 1.03487 0.96584 1.20173 0.97369 1.01015 0.93250 1.22384 1.01637 1.00458 0.90988 1.23014 0.97416 0.96898 1.05044 1.22727 1.00493 0.98729 0.98335 0.93289 0.83896 0.82479 0.74308 0.88589 0.87885 0.90973 0.87360 0.87493 0.91127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.82 12.84 21.45 0.28 -53.55 16 2 C 0.01 0.70 5.45 84.65 0.46 1.16 16 3 Si 0.95 43.14 29.54 68.60 2.03 45.16 16 4 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 5 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 6 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 7 C -0.50 -25.76 7.69 25.60 0.20 -25.56 16 8 H 0.06 3.18 7.82 -2.91 -0.02 3.15 16 9 C 0.10 4.59 2.12 -12.28 -0.03 4.56 16 10 H 0.03 1.43 6.86 -2.39 -0.02 1.42 16 11 C -0.02 -0.87 4.73 -20.21 -0.10 -0.97 16 12 C -0.09 -3.46 8.63 22.27 0.19 -3.27 16 13 C -0.08 -2.65 10.07 22.40 0.23 -2.42 16 14 C -0.22 -7.65 6.56 22.94 0.15 -7.49 16 15 S 0.13 3.21 23.17 -56.49 -1.31 1.90 16 16 C 0.06 1.70 12.10 130.81 1.58 3.28 16 17 N -0.51 -19.27 10.57 -194.77 -2.06 -21.32 16 18 C 0.06 2.34 7.00 39.78 0.28 2.62 16 19 C -0.10 -4.56 9.66 22.46 0.22 -4.34 16 20 C -0.14 -5.35 4.93 -10.79 -0.05 -5.41 16 21 C -0.19 -6.51 10.18 30.59 0.31 -6.19 16 22 C -0.17 -5.99 10.01 30.59 0.31 -5.68 16 23 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 24 H 0.14 4.93 7.79 -2.91 -0.02 4.91 16 25 H 0.16 3.94 8.06 -2.91 -0.02 3.92 16 26 H 0.24 3.85 8.06 -2.91 -0.02 3.83 16 27 H 0.10 4.94 7.88 -2.91 -0.02 4.92 16 28 H 0.10 3.65 7.41 -2.39 -0.02 3.64 16 29 H 0.07 2.71 8.08 -2.39 -0.02 2.69 16 30 H 0.11 3.10 8.14 -2.39 -0.02 3.08 16 31 H 0.11 3.20 8.14 -2.39 -0.02 3.18 16 32 H 0.07 2.88 8.14 -2.39 -0.02 2.87 16 Total: -1.00 -64.96 291.25 3.81 -61.15 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: 1.12 Total: 16.36 kcal Atomic # 6 Polarization: -53.46 SS G_CDS: 3.75 Total: -49.71 kcal Atomic # 7 Polarization: -73.09 SS G_CDS: -1.78 Total: -74.87 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.16 kcal Atomic # 16 Polarization: 3.21 SS G_CDS: -1.31 Total: 1.90 kcal Total: -64.96 3.81 -61.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260867247.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.977 kcal (2) G-P(sol) polarization free energy of solvation -64.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds