Wall clock time and date at job start Mon Mar 30 2020 06:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38267 * 119.95968 * 2 1 4 4 C 1.38248 * 120.13165 * 180.29684 * 3 2 1 5 5 C 1.50698 * 119.97519 * 179.69872 * 4 3 2 6 6 H 1.08993 * 109.46878 * 144.99940 * 5 4 3 7 7 N 1.46900 * 109.46975 * 25.00077 * 5 4 3 8 8 C 1.50699 * 109.47096 * 265.00307 * 5 4 3 9 9 H 1.07997 * 120.00457 * 359.97438 * 8 5 4 10 10 C 1.37878 * 119.99693 * 179.97438 * 8 5 4 11 11 N 1.31508 * 120.00255 * 0.02562 * 10 8 5 12 12 Si 1.86802 * 120.00067 * 179.97438 * 10 8 5 13 13 H 1.48508 * 109.46840 * 60.00417 * 12 10 8 14 14 H 1.48496 * 109.47392 * 180.02562 * 12 10 8 15 15 H 1.48499 * 109.47124 * 300.00774 * 12 10 8 16 16 C 1.38363 * 120.04766 * 359.45106 * 4 3 2 17 17 F 1.35100 * 120.03734 * 180.25553 * 16 4 3 18 18 C 1.38855 * 119.91932 * 0.54257 * 16 4 3 19 19 O 1.35983 * 120.06657 * 179.70640 * 18 16 4 20 20 C 1.38270 * 119.95474 * 180.02562 * 2 1 3 21 21 Cl 1.73598 * 120.02975 * 0.02562 * 20 2 1 22 22 H 1.09000 * 109.46957 * 90.00096 * 1 2 3 23 23 H 1.09001 * 109.47364 * 210.00393 * 1 2 3 24 24 H 1.09000 * 109.46979 * 330.00409 * 1 2 3 25 25 H 1.08002 * 119.93140 * 0.02562 * 3 2 1 26 26 H 1.00902 * 111.00396 * 176.04941 * 7 5 4 27 27 H 1.00900 * 111.00192 * 299.99998 * 7 5 4 28 28 H 0.97002 * 120.00451 * 179.97438 * 11 10 8 29 29 H 0.96698 * 113.99988 * 270.02441 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1979 0.0000 4 6 3.5800 1.2021 -0.0062 5 6 4.3290 2.5097 -0.0130 6 1 5.2426 2.4082 0.5726 7 7 3.4857 3.5600 0.5733 8 6 4.6797 2.8803 -1.4310 9 1 4.3897 2.2335 -2.2458 10 6 5.3709 4.0453 -1.6882 11 7 5.7245 4.8328 -0.6961 12 14 5.8063 4.5044 -3.4458 13 1 4.5617 4.6420 -4.2442 14 1 6.5442 5.7930 -3.4525 15 1 6.6593 3.4429 -4.0379 16 6 4.2764 0.0065 -0.0009 17 9 5.6274 0.0108 -0.0018 18 6 3.5851 -1.1977 -0.0008 19 8 4.2666 -2.3745 -0.0017 20 6 2.1974 -1.1980 -0.0005 21 17 1.3290 -2.7012 -0.0019 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3634 -0.8899 0.5139 24 1 -0.3633 0.8900 0.5138 25 1 1.6557 2.1322 0.0004 26 1 3.9883 4.4325 0.6393 27 1 2.6318 3.6735 0.0479 28 1 6.2111 5.6522 -0.8770 29 1 4.4634 -2.7144 -0.8853 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260887175.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:47 Heat of formation + Delta-G solvation = -99.499059 kcal Electronic energy + Delta-G solvation = -17278.036083 eV Core-core repulsion = 14140.370560 eV Total energy + Delta-G solvation = -3137.665523 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.83782 -40.82394 -38.42619 -37.59698 -36.40125 -33.78570 -32.58383 -30.38513 -28.28132 -27.44882 -25.14594 -23.09880 -21.57206 -19.25995 -18.75129 -18.44681 -18.24572 -16.94395 -16.74965 -16.03171 -15.84146 -15.57694 -14.87081 -14.79788 -14.60842 -14.26605 -13.79759 -13.47903 -13.20029 -13.12963 -12.89692 -12.70739 -12.57087 -12.23934 -12.14500 -11.87083 -11.74711 -11.40625 -10.75854 -9.61716 -9.48732 -9.22600 -8.17449 -6.43441 -0.01452 0.02006 1.00537 1.37602 1.39287 1.47024 2.28314 2.43019 2.86019 3.02135 3.41956 3.81333 3.83953 4.08748 4.39650 4.43262 4.69587 4.77127 4.85734 4.90673 5.11668 5.25352 5.35746 5.56543 5.58653 5.72538 5.94383 6.56446 6.56870 6.82108 7.06844 7.32771 8.78224 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.027716 B = 0.006513 C = 0.006022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.995230 B = 4298.324254 C = 4648.479132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.064 4.064 3 C -0.085 4.085 4 C -0.063 4.063 5 C 0.247 3.753 6 H 0.010 0.990 7 N -0.838 5.838 8 C -0.561 4.561 9 H 0.048 0.952 10 C 0.026 3.974 11 N -0.913 5.913 12 Si 0.961 3.039 13 H -0.266 1.266 14 H -0.280 1.280 15 H -0.278 1.278 16 C 0.045 3.955 17 F -0.143 7.143 18 C 0.085 3.915 19 O -0.485 6.485 20 C -0.062 4.062 21 Cl -0.036 7.036 22 H 0.091 0.909 23 H 0.081 0.919 24 H 0.089 0.911 25 H 0.154 0.846 26 H 0.349 0.651 27 H 0.324 0.676 28 H 0.270 0.730 29 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.403 -10.190 -1.088 14.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.065 4.065 3 C -0.103 4.103 4 C -0.065 4.065 5 C 0.136 3.864 6 H 0.028 0.972 7 N -0.368 5.368 8 C -0.600 4.600 9 H 0.066 0.934 10 C -0.175 4.175 11 N -0.552 5.552 12 Si 0.786 3.214 13 H -0.191 1.191 14 H -0.206 1.206 15 H -0.204 1.204 16 C 0.025 3.975 17 F -0.122 7.122 18 C 0.038 3.962 19 O -0.297 6.297 20 C -0.089 4.089 21 Cl -0.007 7.007 22 H 0.110 0.890 23 H 0.099 0.901 24 H 0.107 0.893 25 H 0.171 0.829 26 H 0.164 0.836 27 H 0.135 0.865 28 H 0.079 0.921 29 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -10.373 -10.576 0.227 14.816 hybrid contribution 1.395 0.687 -2.173 2.672 sum -8.978 -9.889 -1.946 13.498 Atomic orbital electron populations 1.20932 0.87039 1.04659 1.04210 1.20051 0.98749 0.89696 0.97987 1.20862 0.91625 0.98585 0.99232 1.20492 0.95568 0.94461 0.95977 1.17626 0.90240 0.85799 0.92707 0.97208 1.59490 1.08876 1.12736 1.55717 1.21850 1.37960 1.06899 0.93286 0.93358 1.25726 0.94392 0.96100 1.01320 1.69820 1.39328 1.13440 1.32626 0.85569 0.78610 0.77315 0.79911 1.19078 1.20555 1.20391 1.18002 0.77168 0.93864 1.08459 1.91426 1.29308 1.97292 1.94182 1.17922 0.89024 0.84552 1.04667 1.84808 1.75723 1.34000 1.35150 1.20828 0.90004 0.88761 1.09343 1.98327 1.75194 1.30338 1.96872 0.89042 0.90068 0.89268 0.82872 0.83556 0.86486 0.92084 0.73349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.24 9.61 71.24 0.68 -1.56 15 2 C -0.06 -1.84 5.88 -19.85 -0.12 -1.95 15 3 C -0.08 -2.94 8.92 22.28 0.20 -2.74 15 4 C -0.06 -2.72 5.00 -19.83 -0.10 -2.82 15 5 C 0.25 12.44 2.72 43.42 0.12 12.56 15 6 H 0.01 0.59 7.78 -2.39 -0.02 0.57 15 7 N -0.84 -38.56 8.79 -174.96 -1.54 -40.10 15 8 C -0.56 -29.96 8.71 25.60 0.22 -29.74 15 9 H 0.05 2.59 7.74 -2.91 -0.02 2.57 15 10 C 0.03 1.35 5.38 84.66 0.46 1.81 15 11 N -0.91 -49.98 11.54 21.45 0.25 -49.74 15 12 Si 0.96 42.14 29.54 68.60 2.03 44.16 15 13 H -0.27 -11.18 7.11 99.48 0.71 -10.47 15 14 H -0.28 -11.99 7.11 99.48 0.71 -11.29 15 15 H -0.28 -12.27 7.11 99.48 0.71 -11.56 15 16 C 0.05 1.91 7.25 22.45 0.16 2.07 15 17 F -0.14 -6.66 16.40 44.97 0.74 -5.93 15 18 C 0.09 2.95 6.70 22.54 0.15 3.10 15 19 O -0.48 -14.62 12.83 -93.36 -1.20 -15.81 15 20 C -0.06 -1.86 6.33 22.40 0.14 -1.72 15 21 Cl -0.04 -0.88 26.84 -2.72 -0.07 -0.95 15 22 H 0.09 1.58 8.14 -2.39 -0.02 1.56 15 23 H 0.08 1.48 6.90 -2.39 -0.02 1.46 15 24 H 0.09 1.55 8.08 -2.39 -0.02 1.53 15 25 H 0.15 4.87 6.28 -2.91 -0.02 4.86 15 26 H 0.35 17.43 7.08 -89.69 -0.63 16.80 15 27 H 0.32 13.42 7.20 -89.69 -0.65 12.77 15 28 H 0.27 14.04 8.31 -92.71 -0.77 13.27 15 29 H 0.41 8.48 9.06 -74.06 -0.67 7.81 15 Total: -1.00 -60.88 270.33 1.41 -59.48 By element: Atomic # 1 Polarization: 30.59 SS G_CDS: -0.72 Total: 29.87 kcal Atomic # 6 Polarization: -22.91 SS G_CDS: 1.92 Total: -20.99 kcal Atomic # 7 Polarization: -88.54 SS G_CDS: -1.29 Total: -89.83 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: -1.20 Total: -15.81 kcal Atomic # 9 Polarization: -6.66 SS G_CDS: 0.74 Total: -5.93 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.16 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -0.07 Total: -0.95 kcal Total: -60.88 1.41 -59.48 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260887175.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.022 kcal (2) G-P(sol) polarization free energy of solvation -60.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds