Wall clock time and date at job start Mon Mar 30 2020 06:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38261 * 119.95834 * 2 1 4 4 C 1.38243 * 120.13691 * 179.97438 * 3 2 1 5 5 C 1.50699 * 119.97932 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.46633 * 220.00380 * 5 4 3 7 7 N 1.46900 * 109.46716 * 339.99837 * 5 4 3 8 8 C 1.50699 * 109.47449 * 100.00143 * 5 4 3 9 9 H 1.07999 * 119.99411 * 0.02562 * 8 5 4 10 10 C 1.37869 * 120.00276 * 180.02562 * 8 5 4 11 11 N 1.31515 * 119.99949 * 359.97438 * 10 8 5 12 12 Si 1.86797 * 120.00209 * 179.97438 * 10 8 5 13 13 H 1.48498 * 109.47160 * 89.99940 * 12 10 8 14 14 H 1.48500 * 109.47165 * 210.00033 * 12 10 8 15 15 H 1.48493 * 109.47059 * 329.99908 * 12 10 8 16 16 C 1.38363 * 120.04566 * 0.02562 * 4 3 2 17 17 F 1.35102 * 120.04055 * 180.02562 * 16 4 3 18 18 C 1.38863 * 119.92409 * 359.97438 * 16 4 3 19 19 O 1.35968 * 120.07271 * 179.97438 * 18 16 4 20 20 C 1.38266 * 119.95715 * 179.71859 * 2 1 3 21 21 Cl 1.73598 * 120.02685 * 0.02562 * 20 2 1 22 22 H 1.09001 * 109.46953 * 89.99942 * 1 2 3 23 23 H 1.09000 * 109.47318 * 209.99540 * 1 2 3 24 24 H 1.09000 * 109.47161 * 330.00171 * 1 2 3 25 25 H 1.08008 * 119.93489 * 0.02562 * 3 2 1 26 26 H 1.00896 * 110.99971 * 296.04456 * 7 5 4 27 27 H 1.00899 * 110.99991 * 60.00490 * 7 5 4 28 28 H 0.97002 * 120.00727 * 179.97438 * 11 10 8 29 29 H 0.96702 * 113.99878 * 90.00232 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1975 1.1979 0.0000 4 6 3.5799 1.2022 0.0005 5 6 4.3289 2.5099 -0.0001 6 1 5.1928 2.4334 -0.6603 7 7 3.4430 3.5812 -0.4749 8 6 4.7921 2.8242 1.3991 9 1 4.5671 2.1446 2.2078 10 6 5.5032 3.9791 1.6468 11 7 5.7777 4.8063 0.6619 12 14 6.0768 4.3690 3.3812 13 1 7.4256 3.7873 3.5990 14 1 6.1375 5.8415 3.5632 15 1 5.1233 3.7881 4.3602 16 6 4.2764 0.0066 0.0005 17 9 5.6274 0.0110 0.0016 18 6 3.5852 -1.1977 0.0005 19 8 4.2666 -2.3744 0.0000 20 6 2.1975 -1.1979 0.0059 21 17 1.3291 -2.7011 0.0126 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 1.6557 2.1322 0.0004 26 1 3.1703 3.4265 -1.4339 27 1 2.6339 3.6721 0.1211 28 1 6.2776 5.6191 0.8361 29 1 4.4640 -2.7149 0.8833 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260887177.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:50 Heat of formation + Delta-G solvation = -92.517551 kcal Electronic energy + Delta-G solvation = -17286.669630 eV Core-core repulsion = 14149.306847 eV Total energy + Delta-G solvation = -3137.362782 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.052 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.83236 -40.89114 -38.48854 -37.63237 -36.23340 -33.81669 -32.69271 -30.31078 -28.39240 -27.44849 -25.06448 -23.06828 -21.63655 -19.28772 -18.73615 -18.38460 -18.18640 -16.90430 -16.62958 -16.08132 -15.87188 -15.62324 -15.18563 -14.84569 -14.70403 -14.36600 -13.77016 -13.58804 -13.15834 -13.05589 -12.84974 -12.66153 -12.56800 -12.16770 -12.11691 -11.86470 -11.58775 -11.26364 -10.58683 -9.68181 -9.43027 -9.00831 -8.01628 -6.23944 -0.08434 -0.02553 0.96818 1.42560 1.43844 1.52819 2.26157 2.48063 2.85072 3.22386 3.39295 3.74979 3.83112 4.01840 4.30592 4.39807 4.59136 4.74214 4.80651 4.81699 5.05632 5.21951 5.25286 5.45372 5.62406 5.70766 6.09537 6.53191 6.58622 7.03917 7.21461 7.48387 9.01950 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.027849 B = 0.006553 C = 0.006013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.178904 B = 4272.124952 C = 4655.738975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.060 4.060 3 C -0.102 4.102 4 C -0.104 4.104 5 C 0.264 3.736 6 H 0.011 0.989 7 N -0.816 5.816 8 C -0.542 4.542 9 H 0.045 0.955 10 C 0.038 3.962 11 N -0.877 5.877 12 Si 0.949 3.051 13 H -0.281 1.281 14 H -0.281 1.281 15 H -0.268 1.268 16 C 0.051 3.949 17 F -0.141 7.141 18 C 0.085 3.915 19 O -0.485 6.485 20 C -0.063 4.063 21 Cl -0.036 7.036 22 H 0.092 0.908 23 H 0.081 0.919 24 H 0.088 0.912 25 H 0.154 0.846 26 H 0.317 0.683 27 H 0.330 0.670 28 H 0.257 0.743 29 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.312 -11.523 -0.225 16.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.061 4.061 3 C -0.120 4.120 4 C -0.107 4.107 5 C 0.153 3.847 6 H 0.029 0.971 7 N -0.345 5.345 8 C -0.581 4.581 9 H 0.063 0.937 10 C -0.166 4.166 11 N -0.512 5.512 12 Si 0.774 3.226 13 H -0.207 1.207 14 H -0.207 1.207 15 H -0.193 1.193 16 C 0.031 3.969 17 F -0.120 7.120 18 C 0.038 3.962 19 O -0.298 6.298 20 C -0.091 4.091 21 Cl -0.007 7.007 22 H 0.110 0.890 23 H 0.099 0.901 24 H 0.107 0.893 25 H 0.171 0.829 26 H 0.129 0.871 27 H 0.145 0.855 28 H 0.066 0.934 29 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -10.664 -10.930 -0.751 15.289 hybrid contribution 0.513 -0.629 1.139 1.399 sum -10.151 -11.558 0.389 15.388 Atomic orbital electron populations 1.20946 0.87032 1.04695 1.04274 1.20017 0.98692 0.89702 0.97704 1.20905 0.91595 0.98803 1.00724 1.21729 0.96021 0.96814 0.96177 1.17731 0.90068 0.81464 0.95428 0.97137 1.58857 1.21809 1.49413 1.04386 1.20963 1.37193 1.06924 0.92979 0.93700 1.25636 0.95084 0.95904 0.99979 1.70211 1.37456 1.11129 1.32449 0.85735 0.78566 0.77297 0.80987 1.20658 1.20666 1.19261 1.18031 0.77307 0.93813 1.07782 1.91442 1.29229 1.97281 1.94050 1.18035 0.89082 0.84709 1.04330 1.84804 1.75706 1.34056 1.35194 1.20856 0.90052 0.88831 1.09312 1.98332 1.75182 1.30341 1.96858 0.88957 0.90062 0.89276 0.82874 0.87118 0.85525 0.93380 0.73295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.11 9.62 71.24 0.69 -1.43 15 2 C -0.06 -1.64 5.88 -19.85 -0.12 -1.75 15 3 C -0.10 -3.29 8.90 22.28 0.20 -3.09 15 4 C -0.10 -4.25 5.02 -19.83 -0.10 -4.35 15 5 C 0.26 13.01 2.57 43.42 0.11 13.13 15 6 H 0.01 0.62 7.94 -2.39 -0.02 0.60 15 7 N -0.82 -36.20 8.01 -174.95 -1.40 -37.60 15 8 C -0.54 -29.57 8.70 25.60 0.22 -29.35 15 9 H 0.04 2.46 7.74 -2.91 -0.02 2.44 15 10 C 0.04 2.11 5.39 84.65 0.46 2.57 15 11 N -0.88 -50.98 12.77 21.44 0.27 -50.70 15 12 Si 0.95 43.52 29.54 68.60 2.03 45.54 15 13 H -0.28 -12.78 7.11 99.48 0.71 -12.08 15 14 H -0.28 -12.60 7.11 99.48 0.71 -11.90 15 15 H -0.27 -11.89 7.11 99.48 0.71 -11.18 15 16 C 0.05 2.09 7.24 22.45 0.16 2.25 15 17 F -0.14 -6.47 16.50 44.97 0.74 -5.73 15 18 C 0.09 2.87 6.70 22.55 0.15 3.02 15 19 O -0.49 -14.33 12.83 -93.19 -1.20 -15.53 15 20 C -0.06 -1.82 6.33 22.40 0.14 -1.68 15 21 Cl -0.04 -0.85 26.83 -2.72 -0.07 -0.92 15 22 H 0.09 1.47 8.14 -2.39 -0.02 1.45 15 23 H 0.08 1.39 6.89 -2.39 -0.02 1.38 15 24 H 0.09 1.43 8.08 -2.39 -0.02 1.41 15 25 H 0.15 4.37 6.24 -2.91 -0.02 4.35 15 26 H 0.32 12.31 9.06 -89.70 -0.81 11.50 15 27 H 0.33 13.28 7.28 -89.69 -0.65 12.63 15 28 H 0.26 14.27 8.31 -92.71 -0.77 13.50 15 29 H 0.41 8.34 9.06 -74.06 -0.67 7.67 15 Total: -1.00 -65.24 272.89 1.38 -63.86 By element: Atomic # 1 Polarization: 22.66 SS G_CDS: -0.90 Total: 21.76 kcal Atomic # 6 Polarization: -22.60 SS G_CDS: 1.91 Total: -20.69 kcal Atomic # 7 Polarization: -87.17 SS G_CDS: -1.13 Total: -88.30 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: -1.20 Total: -15.53 kcal Atomic # 9 Polarization: -6.47 SS G_CDS: 0.74 Total: -5.73 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -0.07 Total: -0.92 kcal Total: -65.24 1.38 -63.86 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260887177.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.660 kcal (2) G-P(sol) polarization free energy of solvation -65.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds