Wall clock time and date at job start Mon Mar 30 2020 07:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48503 * 109.46845 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 299.99578 * 3 2 1 6 6 H 1.48498 * 109.47295 * 60.00185 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99722 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.46844 * 299.99724 * 9 7 2 11 11 C 1.50705 * 109.46757 * 180.02562 * 9 7 2 12 12 C 1.37695 * 120.02488 * 299.99822 * 11 9 7 13 13 C 1.38743 * 120.06808 * 180.02562 * 12 11 9 14 14 C 1.36219 * 120.77895 * 0.02562 * 13 12 11 15 15 C 1.40924 * 120.42383 * 359.97438 * 14 13 12 16 16 N 1.34671 * 129.69501 * 180.02562 * 15 14 13 17 17 C 1.27945 * 117.84017 * 179.12168 * 16 15 14 18 18 S 1.70643 * 111.53086 * 0.82858 * 17 16 15 19 19 C 1.39293 * 120.02423 * 119.72993 * 11 9 7 20 20 C 1.52992 * 109.47120 * 60.00132 * 9 7 2 21 21 C 1.52997 * 117.49898 * 248.61938 * 20 9 7 22 22 C 1.52992 * 60.00261 * 252.50938 * 21 20 9 23 23 H 0.97000 * 119.99651 * 180.02562 * 1 2 3 24 24 H 1.07999 * 119.96504 * 0.02605 * 12 11 9 25 25 H 1.08000 * 119.61355 * 180.02562 * 13 12 11 26 26 H 1.07997 * 119.78865 * 179.97438 * 14 13 12 27 27 H 1.08002 * 124.22976 * 180.22057 * 17 16 15 28 28 H 1.09006 * 115.55247 * 34.32791 * 20 9 7 29 29 H 1.09005 * 117.50113 * 0.02562 * 21 20 9 30 30 H 1.09000 * 117.50472 * 145.01957 * 21 20 9 31 31 H 1.08998 * 117.50041 * 252.50841 * 22 21 20 32 32 H 1.09010 * 117.49873 * 107.48231 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6241 -2.5566 0.8903 11 6 2.2304 -3.6445 0.0018 12 6 3.1320 -3.7813 -1.0299 13 6 4.0337 -4.8358 -1.0299 14 6 4.0413 -5.7465 -0.0169 15 6 3.1304 -5.6322 1.0523 16 7 2.9747 -6.4149 2.1370 17 6 2.0753 -6.0875 2.9861 18 16 1.2380 -4.6821 2.5007 19 6 2.2280 -4.5625 1.0495 20 6 0.3720 -2.5804 -1.2490 21 6 -1.1439 -2.5158 -1.0517 22 6 -0.4780 -3.8391 -1.4341 23 1 -0.4850 -0.8401 0.0004 24 1 3.1372 -3.0670 -1.8399 25 1 4.7379 -4.9358 -1.8426 26 1 4.7499 -6.5613 -0.0333 27 1 1.8654 -6.6377 3.8914 28 1 0.7836 -2.1149 -2.1446 29 1 -1.5149 -2.4149 -0.0317 30 1 -1.7299 -2.0075 -1.8174 31 1 -0.6259 -4.2014 -2.4514 32 1 -0.4108 -4.6093 -0.6656 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260900940.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:47 Heat of formation + Delta-G solvation = 72.337821 kcal Electronic energy + Delta-G solvation = -16868.677963 eV Core-core repulsion = 14307.109872 eV Total energy + Delta-G solvation = -2561.568091 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.99748 -37.69248 -35.99163 -32.88602 -31.33369 -29.44087 -27.09251 -24.55353 -23.46306 -22.02401 -21.53307 -21.19871 -19.32283 -17.67488 -16.86762 -15.92288 -15.55733 -14.99850 -14.57952 -14.30197 -13.80633 -13.52188 -13.26287 -12.98414 -12.26380 -12.04287 -11.48904 -11.29444 -11.02492 -10.86658 -10.83518 -10.45977 -10.21858 -10.10448 -9.67685 -9.57322 -9.35084 -9.13755 -8.56174 -8.37235 -8.28689 -7.44442 -6.33820 -4.14945 0.84174 1.67339 1.70494 2.18503 2.80562 3.41449 3.43624 3.57719 4.17687 4.31316 4.48875 4.67125 5.09978 5.27831 5.34431 5.52470 5.64131 5.73576 5.74327 5.86143 5.91723 6.14969 6.26029 6.33413 6.48576 6.66101 6.68017 6.75992 6.82147 6.94584 7.10545 7.24245 7.46917 7.89371 8.05983 8.38888 8.84813 9.59112 11.02461 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.020411 B = 0.007739 C = 0.007483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.464876 B = 3617.160206 C = 3741.056862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.028 3.972 3 Si 1.069 2.931 4 H -0.289 1.289 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.597 4.597 8 H 0.054 0.946 9 C 0.091 3.909 10 H 0.027 0.973 11 C 0.025 3.975 12 C -0.098 4.098 13 C -0.103 4.103 14 C -0.093 4.093 15 C 0.068 3.932 16 N -0.470 5.470 17 C 0.041 3.959 18 S 0.100 5.900 19 C -0.175 4.175 20 C -0.107 4.107 21 C -0.166 4.166 22 C -0.208 4.208 23 H 0.285 0.715 24 H 0.134 0.866 25 H 0.126 0.874 26 H 0.124 0.876 27 H 0.196 0.804 28 H 0.095 0.905 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.562 -9.030 0.656 9.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.179 4.179 3 Si 0.897 3.103 4 H -0.215 1.215 5 H -0.213 1.213 6 H -0.214 1.214 7 C -0.635 4.635 8 H 0.073 0.927 9 C 0.073 3.927 10 H 0.045 0.955 11 C 0.021 3.979 12 C -0.121 4.121 13 C -0.124 4.124 14 C -0.115 4.115 15 C -0.052 4.052 16 N -0.183 5.183 17 C -0.264 4.264 18 S 0.354 5.646 19 C -0.294 4.294 20 C -0.126 4.126 21 C -0.204 4.204 22 C -0.245 4.245 23 H 0.099 0.901 24 H 0.152 0.848 25 H 0.144 0.856 26 H 0.142 0.858 27 H 0.213 0.787 28 H 0.113 0.887 29 H 0.105 0.895 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.845 -7.373 1.291 7.709 hybrid contribution 0.759 -1.814 -0.538 2.039 sum 2.603 -9.187 0.753 9.578 Atomic orbital electron populations 1.70691 1.06874 1.32680 1.44433 1.25708 0.96557 1.02195 0.93406 0.83547 0.74612 0.75088 0.77010 1.21504 1.21336 1.21352 1.21869 0.94091 0.90085 1.57436 0.92733 1.17750 0.91107 0.91514 0.92378 0.95466 1.19661 0.95711 0.92734 0.89780 1.21030 0.94554 0.97557 0.98910 1.20711 0.99002 0.94653 0.98001 1.20111 0.98360 1.00470 0.92549 1.19173 0.98883 0.92209 0.94904 1.66219 1.19422 1.30100 1.02608 1.27992 0.96404 0.99508 1.02454 1.84106 1.37506 1.26278 1.16719 1.23750 1.02416 1.02078 1.01115 1.22655 0.91717 0.97232 1.00971 1.22767 0.96855 0.99125 1.01621 1.23012 1.08483 0.92101 1.00900 0.90057 0.84771 0.85562 0.85847 0.78743 0.88727 0.89467 0.89822 0.90236 0.90270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.78 13.38 55.43 0.74 -25.04 16 2 C 0.03 0.76 5.30 -17.82 -0.09 0.66 16 3 Si 1.07 24.41 29.90 -169.99 -5.08 19.32 16 4 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.44 7.11 56.52 0.40 -6.03 16 6 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.60 -15.78 8.22 -34.44 -0.28 -16.06 16 8 H 0.05 1.47 7.60 -52.48 -0.40 1.07 16 9 C 0.09 2.16 1.86 -92.92 -0.17 1.98 16 10 H 0.03 0.70 6.75 -51.93 -0.35 0.35 16 11 C 0.03 0.54 4.41 -104.43 -0.46 0.08 16 12 C -0.10 -1.86 8.81 -39.59 -0.35 -2.21 16 13 C -0.10 -1.66 9.94 -40.12 -0.40 -2.05 16 14 C -0.09 -1.56 10.05 -39.29 -0.39 -1.96 16 15 C 0.07 1.28 7.00 -84.96 -0.59 0.68 16 16 N -0.47 -8.31 10.57 -12.95 -0.14 -8.45 16 17 C 0.04 0.61 12.10 51.14 0.62 1.23 16 18 S 0.10 1.73 22.25 -107.50 -2.39 -0.66 16 19 C -0.18 -3.52 6.35 -38.55 -0.24 -3.77 16 20 C -0.11 -2.35 3.86 -90.62 -0.35 -2.70 16 21 C -0.17 -3.43 8.14 -26.74 -0.22 -3.65 16 22 C -0.21 -3.94 9.87 -26.74 -0.26 -4.20 16 23 H 0.28 7.74 3.57 -40.82 -0.15 7.59 16 24 H 0.13 2.49 8.05 -52.49 -0.42 2.06 16 25 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 26 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 27 H 0.20 2.03 8.06 -52.49 -0.42 1.61 16 28 H 0.09 2.16 8.11 -51.93 -0.42 1.74 16 29 H 0.09 1.87 7.43 -51.93 -0.39 1.48 16 30 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 31 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 32 H 0.08 1.51 8.14 -51.92 -0.42 1.09 16 LS Contribution 283.42 15.07 4.27 4.27 Total: -1.00 -29.73 283.42 -9.26 -38.99 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -3.46 Total: 3.53 kcal Atomic # 6 Polarization: -28.76 SS G_CDS: -3.20 Total: -31.97 kcal Atomic # 7 Polarization: -34.09 SS G_CDS: 0.60 Total: -33.49 kcal Atomic # 14 Polarization: 24.41 SS G_CDS: -5.08 Total: 19.32 kcal Atomic # 16 Polarization: 1.73 SS G_CDS: -2.39 Total: -0.66 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -29.73 -9.26 -38.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260900940.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.324 kcal (2) G-P(sol) polarization free energy of solvation -29.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds