Wall clock time and date at job start Mon Mar 30 2020 07:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48503 * 109.46845 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 299.99578 * 3 2 1 6 6 H 1.48498 * 109.47295 * 60.00185 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99722 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.46844 * 299.99724 * 9 7 2 11 11 C 1.50705 * 109.46757 * 180.02562 * 9 7 2 12 12 C 1.37695 * 120.02488 * 299.99822 * 11 9 7 13 13 C 1.38743 * 120.06808 * 180.02562 * 12 11 9 14 14 C 1.36219 * 120.77895 * 0.02562 * 13 12 11 15 15 C 1.40924 * 120.42383 * 359.97438 * 14 13 12 16 16 N 1.34671 * 129.69501 * 180.02562 * 15 14 13 17 17 C 1.27945 * 117.84017 * 179.12168 * 16 15 14 18 18 S 1.70643 * 111.53086 * 0.82858 * 17 16 15 19 19 C 1.39293 * 120.02423 * 119.72993 * 11 9 7 20 20 C 1.52992 * 109.47120 * 60.00132 * 9 7 2 21 21 C 1.52997 * 117.49898 * 248.61938 * 20 9 7 22 22 C 1.52992 * 60.00261 * 252.50938 * 21 20 9 23 23 H 0.97000 * 119.99651 * 180.02562 * 1 2 3 24 24 H 1.07999 * 119.96504 * 0.02605 * 12 11 9 25 25 H 1.08000 * 119.61355 * 180.02562 * 13 12 11 26 26 H 1.07997 * 119.78865 * 179.97438 * 14 13 12 27 27 H 1.08002 * 124.22976 * 180.22057 * 17 16 15 28 28 H 1.09006 * 115.55247 * 34.32791 * 20 9 7 29 29 H 1.09005 * 117.50113 * 0.02562 * 21 20 9 30 30 H 1.09000 * 117.50472 * 145.01957 * 21 20 9 31 31 H 1.08998 * 117.50041 * 252.50841 * 22 21 20 32 32 H 1.09010 * 117.49873 * 107.48231 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6241 -2.5566 0.8903 11 6 2.2304 -3.6445 0.0018 12 6 3.1320 -3.7813 -1.0299 13 6 4.0337 -4.8358 -1.0299 14 6 4.0413 -5.7465 -0.0169 15 6 3.1304 -5.6322 1.0523 16 7 2.9747 -6.4149 2.1370 17 6 2.0753 -6.0875 2.9861 18 16 1.2380 -4.6821 2.5007 19 6 2.2280 -4.5625 1.0495 20 6 0.3720 -2.5804 -1.2490 21 6 -1.1439 -2.5158 -1.0517 22 6 -0.4780 -3.8391 -1.4341 23 1 -0.4850 -0.8401 0.0004 24 1 3.1372 -3.0670 -1.8399 25 1 4.7379 -4.9358 -1.8426 26 1 4.7499 -6.5613 -0.0333 27 1 1.8654 -6.6377 3.8914 28 1 0.7836 -2.1149 -2.1446 29 1 -1.5149 -2.4149 -0.0317 30 1 -1.7299 -2.0075 -1.8174 31 1 -0.6259 -4.2014 -2.4514 32 1 -0.4108 -4.6093 -0.6656 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260900940.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:47 Heat of formation + Delta-G solvation = 56.789493 kcal Electronic energy + Delta-G solvation = -16869.352189 eV Core-core repulsion = 14307.109872 eV Total energy + Delta-G solvation = -2562.242317 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.37645 -39.30173 -37.42611 -34.77661 -32.92957 -30.80749 -28.80575 -25.87666 -25.38933 -23.54519 -23.08147 -22.64110 -20.99504 -19.18893 -18.64219 -17.30558 -16.92402 -16.57994 -16.03592 -15.73199 -15.61168 -15.17816 -14.69431 -14.49299 -14.02889 -13.46723 -12.95849 -12.77919 -12.70396 -12.65733 -12.42832 -12.13729 -11.95302 -11.69265 -11.40370 -11.07285 -10.86654 -10.69521 -10.44343 -10.30128 -9.65134 -8.89362 -8.43395 -6.26643 -0.48164 0.29135 0.36811 0.85609 1.44194 1.54644 1.61585 1.77983 2.58348 2.80144 3.01883 3.11360 3.25175 3.74587 3.95277 4.11728 4.16334 4.20157 4.29479 4.36510 4.43945 4.69264 4.72153 4.82230 4.96740 4.99627 5.16153 5.21467 5.29750 5.38436 5.48630 5.74545 5.87789 6.10247 6.29541 6.57091 6.77609 7.54170 8.93356 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.020411 B = 0.007739 C = 0.007483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.464876 B = 3617.160206 C = 3741.056862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.017 4.017 3 Si 1.108 2.892 4 H -0.277 1.277 5 H -0.279 1.279 6 H -0.285 1.285 7 C -0.604 4.604 8 H 0.042 0.958 9 C 0.096 3.904 10 H 0.000 1.000 11 C -0.003 4.003 12 C -0.109 4.109 13 C -0.091 4.091 14 C -0.092 4.092 15 C 0.055 3.945 16 N -0.487 5.487 17 C 0.069 3.931 18 S 0.078 5.922 19 C -0.205 4.205 20 C -0.123 4.123 21 C -0.171 4.171 22 C -0.173 4.173 23 H 0.283 0.717 24 H 0.129 0.871 25 H 0.168 0.832 26 H 0.154 0.846 27 H 0.245 0.755 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.091 0.909 31 H 0.106 0.894 32 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.739 -10.675 0.483 11.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.219 4.219 3 Si 0.932 3.068 4 H -0.202 1.202 5 H -0.205 1.205 6 H -0.211 1.211 7 C -0.642 4.642 8 H 0.060 0.940 9 C 0.078 3.922 10 H 0.018 0.982 11 C -0.007 4.007 12 C -0.131 4.131 13 C -0.111 4.111 14 C -0.113 4.113 15 C -0.064 4.064 16 N -0.200 5.200 17 C -0.235 4.235 18 S 0.331 5.669 19 C -0.323 4.323 20 C -0.142 4.142 21 C -0.208 4.208 22 C -0.210 4.210 23 H 0.097 0.903 24 H 0.147 0.853 25 H 0.186 0.814 26 H 0.171 0.829 27 H 0.261 0.739 28 H 0.099 0.901 29 H 0.091 0.909 30 H 0.110 0.890 31 H 0.124 0.876 32 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.027 -9.031 1.105 9.589 hybrid contribution 0.412 -1.403 -0.416 1.520 sum 3.440 -10.434 0.689 11.008 Atomic orbital electron populations 1.70756 1.07634 1.32841 1.46495 1.26876 0.96758 1.05306 0.92924 0.83023 0.74272 0.72204 0.77255 1.20234 1.20516 1.21091 1.22139 0.93706 0.91808 1.56546 0.93959 1.17518 0.91364 0.91575 0.91782 0.98215 1.19523 0.96611 0.92966 0.91625 1.21144 0.95029 0.98621 0.98297 1.21059 0.98354 0.92887 0.98805 1.20552 0.98005 1.01086 0.91646 1.19620 0.98985 0.91926 0.95853 1.66300 1.20537 1.30230 1.02935 1.28780 0.94110 0.97810 1.02826 1.84168 1.38158 1.28100 1.16426 1.23918 1.03839 1.02799 1.01776 1.22393 0.92102 0.99923 0.99791 1.22726 0.96133 1.00787 1.01127 1.22985 1.05051 0.90798 1.02207 0.90312 0.85276 0.81445 0.82868 0.73946 0.90143 0.90925 0.89046 0.87551 0.90366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.60 13.38 21.45 0.29 -54.32 16 2 C -0.02 -0.95 5.30 84.65 0.45 -0.50 16 3 Si 1.11 49.77 29.90 68.60 2.05 51.82 16 4 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 6 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 7 C -0.60 -32.90 8.22 25.60 0.21 -32.69 16 8 H 0.04 2.34 7.60 -2.91 -0.02 2.31 16 9 C 0.10 4.70 1.86 -12.28 -0.02 4.68 16 10 H 0.00 0.00 6.75 -2.39 -0.02 -0.02 16 11 C 0.00 -0.13 4.41 -19.74 -0.09 -0.22 16 12 C -0.11 -4.08 8.81 22.26 0.20 -3.88 16 13 C -0.09 -2.68 9.94 21.92 0.22 -2.47 16 14 C -0.09 -2.81 10.05 22.46 0.23 -2.59 16 15 C 0.06 1.99 7.00 39.78 0.28 2.27 16 16 N -0.49 -16.04 10.57 -194.76 -2.06 -18.10 16 17 C 0.07 1.91 12.10 130.81 1.58 3.49 16 18 S 0.08 2.68 22.25 -56.49 -1.26 1.42 16 19 C -0.21 -8.21 6.35 22.94 0.15 -8.07 16 20 C -0.12 -5.53 3.86 -10.80 -0.04 -5.57 16 21 C -0.17 -7.15 8.14 30.59 0.25 -6.90 16 22 C -0.17 -6.48 9.87 30.59 0.30 -6.17 16 23 H 0.28 15.93 3.57 -92.71 -0.33 15.60 16 24 H 0.13 4.82 8.05 -2.91 -0.02 4.80 16 25 H 0.17 3.48 8.06 -2.91 -0.02 3.46 16 26 H 0.15 3.72 8.06 -2.91 -0.02 3.70 16 27 H 0.24 4.05 8.06 -2.91 -0.02 4.03 16 28 H 0.08 3.79 8.11 -2.38 -0.02 3.77 16 29 H 0.07 3.24 7.43 -2.38 -0.02 3.22 16 30 H 0.09 3.63 8.14 -2.39 -0.02 3.61 16 31 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 32 H 0.08 2.95 8.14 -2.38 -0.02 2.93 16 Total: -1.00 -65.60 283.42 4.29 -61.31 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: 1.56 Total: 16.49 kcal Atomic # 6 Polarization: -62.32 SS G_CDS: 3.71 Total: -58.61 kcal Atomic # 7 Polarization: -70.65 SS G_CDS: -1.77 Total: -72.42 kcal Atomic # 14 Polarization: 49.77 SS G_CDS: 2.05 Total: 51.82 kcal Atomic # 16 Polarization: 2.68 SS G_CDS: -1.26 Total: 1.42 kcal Total: -65.60 4.29 -61.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260900940.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.100 kcal (2) G-P(sol) polarization free energy of solvation -65.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds