Wall clock time and date at job start Mon Mar 30 2020 06:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86794 * 120.00164 * 2 1 4 4 H 1.48505 * 109.47471 * 270.00246 * 3 2 1 5 5 H 1.48503 * 109.47271 * 30.00059 * 3 2 1 6 6 H 1.48494 * 109.47271 * 149.99835 * 3 2 1 7 7 C 1.37882 * 119.99866 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99793 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00008 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47017 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.47204 * 305.00367 * 10 9 7 12 12 N 1.46905 * 109.47034 * 65.00189 * 10 9 7 13 13 C 1.50698 * 109.47049 * 184.99831 * 10 9 7 14 14 C 1.38223 * 120.01542 * 264.99918 * 13 10 9 15 15 C 1.38316 * 120.08626 * 179.97438 * 14 13 10 16 16 Cl 1.73598 * 119.95082 * 180.02562 * 15 14 13 17 17 C 1.38395 * 120.09831 * 0.04666 * 15 14 13 18 18 C 1.38287 * 120.01746 * 359.97438 * 17 15 14 19 19 F 1.35104 * 120.04010 * 179.97438 * 18 17 15 20 20 C 1.38609 * 120.00578 * 84.73042 * 13 10 9 21 21 O 1.35981 * 120.05372 * 359.97438 * 20 13 10 22 22 H 0.96995 * 119.99589 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46976 * 60.00236 * 9 7 2 24 24 H 1.09003 * 109.47133 * 300.00443 * 9 7 2 25 25 H 1.00901 * 110.99869 * 60.00199 * 12 10 9 26 26 H 1.00896 * 110.99543 * 183.95322 * 12 10 9 27 27 H 1.07999 * 119.95426 * 0.02562 * 14 13 10 28 28 H 1.08004 * 119.99058 * 179.97438 * 17 15 14 29 29 H 0.96697 * 113.99637 * 89.99833 * 21 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 1 2.9295 -3.5552 -0.8423 12 7 3.0084 -3.6539 1.2548 13 6 1.4959 -4.9636 -0.1243 14 6 1.1633 -5.6806 1.0097 15 6 0.4751 -6.8751 0.8978 16 17 0.0586 -7.7723 2.3244 17 6 0.1183 -7.3563 -0.3498 18 6 0.4492 -6.6427 -1.4871 19 9 0.1016 -7.1122 -2.7053 20 6 1.1350 -5.4394 -1.3752 21 8 1.4561 -4.7324 -2.4914 22 1 -0.4849 0.8400 0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8897 25 1 2.3961 -3.7518 2.0508 26 1 3.7160 -4.3731 1.2523 27 1 1.4406 -5.3071 1.9844 28 1 -0.4188 -8.2895 -0.4352 29 1 2.3155 -4.9635 -2.8697 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260903577.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:44 Heat of formation + Delta-G solvation = -74.953949 kcal Electronic energy + Delta-G solvation = -16958.427870 eV Core-core repulsion = 13821.826702 eV Total energy + Delta-G solvation = -3136.601167 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.052 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.93092 -39.93014 -37.21645 -36.28293 -35.29036 -32.49183 -29.93804 -29.57826 -28.28545 -24.79649 -22.63069 -22.49179 -20.02741 -18.57286 -17.18642 -17.04237 -16.23778 -16.01697 -15.49674 -15.15353 -14.63295 -14.38719 -14.02338 -13.89495 -13.21689 -12.93514 -12.62530 -12.19056 -12.03875 -11.36363 -11.16521 -11.12231 -10.81987 -10.60837 -10.52888 -10.31924 -9.70968 -9.11589 -8.69221 -8.47358 -8.30104 -8.15011 -5.91662 -3.90943 0.86875 1.01973 1.91999 3.28399 3.38264 3.44347 3.49052 3.95709 4.29029 4.52301 4.65941 4.86845 5.07016 5.19464 5.43436 5.48724 5.64406 5.81398 5.94672 6.02550 6.29325 6.53204 6.72342 7.49702 7.63941 7.66806 7.89020 8.00799 8.08463 8.48698 9.14423 9.70858 11.20158 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.024123 B = 0.005782 C = 0.005103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.444467 B = 4841.772947 C = 5485.409409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.051 3.949 3 Si 0.893 3.107 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.274 1.274 7 C -0.495 4.495 8 H 0.063 0.937 9 C 0.040 3.960 10 C 0.139 3.861 11 H 0.087 0.913 12 N -0.820 5.820 13 C -0.083 4.083 14 C -0.113 4.113 15 C -0.012 4.012 16 Cl -0.063 7.063 17 C -0.150 4.150 18 C 0.086 3.914 19 F -0.130 7.130 20 C 0.087 3.913 21 O -0.470 6.470 22 H 0.258 0.742 23 H 0.027 0.973 24 H 0.016 0.984 25 H 0.336 0.664 26 H 0.324 0.676 27 H 0.141 0.859 28 H 0.145 0.855 29 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.809 -16.192 0.569 16.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.149 4.149 3 Si 0.722 3.278 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.199 1.199 7 C -0.533 4.533 8 H 0.081 0.919 9 C 0.003 3.997 10 C 0.027 3.973 11 H 0.105 0.895 12 N -0.348 5.348 13 C -0.086 4.086 14 C -0.132 4.132 15 C -0.039 4.039 16 Cl -0.034 7.034 17 C -0.170 4.170 18 C 0.066 3.934 19 F -0.108 7.108 20 C 0.040 3.960 21 O -0.280 6.280 22 H 0.068 0.932 23 H 0.046 0.954 24 H 0.034 0.966 25 H 0.151 0.849 26 H 0.135 0.865 27 H 0.159 0.841 28 H 0.163 0.837 29 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 2.299 -15.133 0.543 15.316 hybrid contribution 0.179 -0.504 -0.079 0.540 sum 2.478 -15.636 0.464 15.838 Atomic orbital electron populations 1.69975 1.06032 1.26426 1.51671 1.25018 0.94802 0.99195 0.95843 0.86575 0.79851 0.83535 0.77885 1.20918 1.21517 1.19857 1.21095 0.93298 0.89881 1.49037 0.91922 1.19139 0.92714 0.90240 0.97657 1.20817 0.94942 0.89028 0.92492 0.89462 1.58816 1.17764 1.54297 1.03939 1.21754 0.97370 0.98618 0.90884 1.20862 0.99411 0.93215 0.99732 1.20496 1.01379 0.94507 0.87501 1.98371 1.92270 1.74555 1.38217 1.20734 1.04442 1.02126 0.89672 1.17892 1.01634 0.93388 0.80481 1.91502 1.90133 1.88079 1.41098 1.18320 1.00199 0.89721 0.87751 1.85007 1.41231 1.61919 1.39811 0.93192 0.95445 0.96619 0.84942 0.86489 0.84136 0.83727 0.75531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.24 13.29 55.43 0.74 -26.51 15 2 C 0.05 1.47 5.46 -17.82 -0.10 1.38 15 3 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 15 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 15 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 15 6 H -0.27 -6.60 7.11 56.52 0.40 -6.20 15 7 C -0.49 -13.70 8.84 -34.44 -0.30 -14.01 15 8 H 0.06 1.72 7.74 -52.48 -0.41 1.31 15 9 C 0.04 0.99 4.60 -27.89 -0.13 0.86 15 10 C 0.14 2.62 2.64 -68.86 -0.18 2.44 15 11 H 0.09 1.64 7.70 -51.93 -0.40 1.25 15 12 N -0.82 -13.80 8.54 -5.65 -0.05 -13.85 15 13 C -0.08 -1.34 5.06 -104.49 -0.53 -1.87 15 14 C -0.11 -1.62 9.05 -39.56 -0.36 -1.98 15 15 C -0.01 -0.16 6.32 -39.49 -0.25 -0.41 15 16 Cl -0.06 -0.73 28.95 -51.86 -1.50 -2.23 15 17 C -0.15 -1.95 9.80 -39.51 -0.39 -2.34 15 18 C 0.09 1.26 7.31 -39.30 -0.29 0.98 15 19 F -0.13 -1.91 17.11 2.25 0.04 -1.88 15 20 C 0.09 1.39 6.68 -39.18 -0.26 1.13 15 21 O -0.47 -7.46 12.51 -19.68 -0.25 -7.70 15 22 H 0.26 7.43 8.31 -40.82 -0.34 7.10 15 23 H 0.03 0.76 8.14 -51.93 -0.42 0.34 15 24 H 0.02 0.42 8.14 -51.93 -0.42 0.00 15 25 H 0.34 5.40 7.21 -39.29 -0.28 5.12 15 26 H 0.32 4.39 9.06 -39.29 -0.36 4.03 15 27 H 0.14 1.84 6.29 -52.49 -0.33 1.51 15 28 H 0.14 1.55 8.06 -52.48 -0.42 1.13 15 29 H 0.39 4.05 9.06 45.56 0.41 4.47 15 LS Contribution 276.74 15.07 4.17 4.17 Total: -1.00 -31.57 276.74 -6.42 -37.99 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -1.77 Total: 6.91 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: -2.78 Total: -13.82 kcal Atomic # 7 Polarization: -41.04 SS G_CDS: 0.69 Total: -40.35 kcal Atomic # 8 Polarization: -7.46 SS G_CDS: -0.25 Total: -7.70 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 0.04 Total: -1.88 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -1.50 Total: -2.23 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -31.57 -6.42 -37.99 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260903577.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.960 kcal (2) G-P(sol) polarization free energy of solvation -31.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds