Wall clock time and date at job start Mon Mar 30 2020 06:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86794 * 120.00164 * 2 1 4 4 H 1.48505 * 109.47471 * 270.00246 * 3 2 1 5 5 H 1.48503 * 109.47271 * 30.00059 * 3 2 1 6 6 H 1.48494 * 109.47271 * 149.99835 * 3 2 1 7 7 C 1.37882 * 119.99866 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99793 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00008 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47017 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.47204 * 305.00367 * 10 9 7 12 12 N 1.46905 * 109.47034 * 65.00189 * 10 9 7 13 13 C 1.50698 * 109.47049 * 184.99831 * 10 9 7 14 14 C 1.38223 * 120.01542 * 264.99918 * 13 10 9 15 15 C 1.38316 * 120.08626 * 179.97438 * 14 13 10 16 16 Cl 1.73598 * 119.95082 * 180.02562 * 15 14 13 17 17 C 1.38395 * 120.09831 * 0.04666 * 15 14 13 18 18 C 1.38287 * 120.01746 * 359.97438 * 17 15 14 19 19 F 1.35104 * 120.04010 * 179.97438 * 18 17 15 20 20 C 1.38609 * 120.00578 * 84.73042 * 13 10 9 21 21 O 1.35981 * 120.05372 * 359.97438 * 20 13 10 22 22 H 0.96995 * 119.99589 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46976 * 60.00236 * 9 7 2 24 24 H 1.09003 * 109.47133 * 300.00443 * 9 7 2 25 25 H 1.00901 * 110.99869 * 60.00199 * 12 10 9 26 26 H 1.00896 * 110.99543 * 183.95322 * 12 10 9 27 27 H 1.07999 * 119.95426 * 0.02562 * 14 13 10 28 28 H 1.08004 * 119.99058 * 179.97438 * 17 15 14 29 29 H 0.96697 * 113.99637 * 89.99833 * 21 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 1 2.9295 -3.5552 -0.8423 12 7 3.0084 -3.6539 1.2548 13 6 1.4959 -4.9636 -0.1243 14 6 1.1633 -5.6806 1.0097 15 6 0.4751 -6.8751 0.8978 16 17 0.0586 -7.7723 2.3244 17 6 0.1183 -7.3563 -0.3498 18 6 0.4492 -6.6427 -1.4871 19 9 0.1016 -7.1122 -2.7053 20 6 1.1350 -5.4394 -1.3752 21 8 1.4561 -4.7324 -2.4914 22 1 -0.4849 0.8400 0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8897 25 1 2.3961 -3.7518 2.0508 26 1 3.7160 -4.3731 1.2523 27 1 1.4406 -5.3071 1.9844 28 1 -0.4188 -8.2895 -0.4352 29 1 2.3155 -4.9635 -2.8697 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260903577.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:44 Heat of formation + Delta-G solvation = -97.946020 kcal Electronic energy + Delta-G solvation = -16959.424881 eV Core-core repulsion = 13821.826702 eV Total energy + Delta-G solvation = -3137.598178 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -50.07195 -41.13187 -38.31140 -37.51040 -36.66018 -34.54273 -31.16350 -30.81450 -30.09063 -26.48100 -24.14257 -23.77708 -21.53398 -19.76964 -18.60855 -18.27454 -18.00945 -17.18702 -16.84317 -16.52739 -16.25994 -15.81205 -15.37178 -15.14686 -14.40890 -14.34950 -14.12572 -13.67362 -13.40233 -13.18268 -12.76050 -12.57901 -12.33358 -12.15521 -12.03134 -11.79745 -11.47485 -11.20154 -10.50330 -9.94541 -9.63091 -9.50799 -8.10516 -6.16823 -0.25679 -0.12806 0.88449 1.44278 1.45093 1.56711 2.14407 2.48516 2.83795 3.16646 3.23397 3.47486 3.75145 3.87283 4.01274 4.26237 4.43502 4.60463 4.66634 4.84281 4.90589 5.11536 5.42938 5.49935 5.67262 5.87536 6.28122 6.45216 6.66698 6.79951 6.97657 7.49832 9.01678 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.024123 B = 0.005782 C = 0.005103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.444467 B = 4841.772947 C = 5485.409409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.007 4.007 3 Si 0.961 3.039 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.263 1.263 7 C -0.503 4.503 8 H 0.065 0.935 9 C 0.048 3.952 10 C 0.156 3.844 11 H 0.085 0.915 12 N -0.827 5.827 13 C -0.101 4.101 14 C -0.108 4.108 15 C -0.014 4.014 16 Cl -0.043 7.043 17 C -0.134 4.134 18 C 0.077 3.923 19 F -0.131 7.131 20 C 0.079 3.921 21 O -0.492 6.492 22 H 0.259 0.741 23 H -0.010 1.010 24 H -0.011 1.011 25 H 0.341 0.659 26 H 0.346 0.654 27 H 0.151 0.849 28 H 0.172 0.828 29 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.680 -17.220 1.157 17.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.203 4.203 3 Si 0.787 3.213 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.187 1.187 7 C -0.542 4.542 8 H 0.083 0.917 9 C 0.011 3.989 10 C 0.044 3.956 11 H 0.102 0.898 12 N -0.357 5.357 13 C -0.105 4.105 14 C -0.127 4.127 15 C -0.041 4.041 16 Cl -0.014 7.014 17 C -0.153 4.153 18 C 0.057 3.943 19 F -0.110 7.110 20 C 0.032 3.968 21 O -0.305 6.305 22 H 0.068 0.932 23 H 0.009 0.991 24 H 0.007 0.993 25 H 0.156 0.844 26 H 0.160 0.840 27 H 0.169 0.831 28 H 0.189 0.811 29 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 3.208 -16.189 1.129 16.542 hybrid contribution -0.114 -0.278 -0.246 0.389 sum 3.093 -16.467 0.883 16.778 Atomic orbital electron populations 1.70117 1.07751 1.27275 1.53109 1.25920 0.95620 1.03116 0.95652 0.85497 0.78727 0.78950 0.78122 1.20239 1.21361 1.18743 1.21481 0.93543 0.91171 1.47960 0.91713 1.18895 0.93158 0.92346 0.94521 1.20221 0.93737 0.88209 0.93409 0.89755 1.58674 1.18187 1.55697 1.03181 1.21411 0.98987 0.98220 0.91862 1.20970 0.98860 0.93360 0.99505 1.20513 1.00888 0.94270 0.88391 1.98383 1.92029 1.73906 1.37044 1.21014 1.02964 1.02461 0.88862 1.17923 1.02056 0.93353 0.80984 1.91497 1.90181 1.88008 1.41307 1.18480 1.00444 0.90206 0.87622 1.84939 1.42938 1.62577 1.40043 0.93249 0.99136 0.99260 0.84449 0.84022 0.83112 0.81074 0.73185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.17 13.29 21.45 0.28 -57.89 15 2 C -0.01 -0.40 5.46 84.65 0.46 0.06 15 3 Si 0.96 45.16 29.54 68.60 2.03 47.18 15 4 H -0.28 -12.63 7.11 99.48 0.71 -11.92 15 5 H -0.29 -13.35 7.11 99.48 0.71 -12.64 15 6 H -0.26 -11.81 7.11 99.48 0.71 -11.11 15 7 C -0.50 -28.21 8.84 25.60 0.23 -27.99 15 8 H 0.06 3.53 7.74 -2.91 -0.02 3.51 15 9 C 0.05 2.48 4.60 29.85 0.14 2.62 15 10 C 0.16 5.90 2.64 44.17 0.12 6.02 15 11 H 0.08 3.19 7.70 -2.39 -0.02 3.17 15 12 N -0.83 -27.03 8.54 -171.80 -1.47 -28.50 15 13 C -0.10 -3.25 5.06 -19.78 -0.10 -3.35 15 14 C -0.11 -2.94 9.05 22.28 0.20 -2.74 15 15 C -0.01 -0.33 6.32 22.33 0.14 -0.19 15 16 Cl -0.04 -0.88 28.95 -2.72 -0.08 -0.96 15 17 C -0.13 -3.16 9.80 22.32 0.22 -2.94 15 18 C 0.08 2.16 7.31 22.45 0.16 2.32 15 19 F -0.13 -3.72 17.11 44.97 0.77 -2.95 15 20 C 0.08 2.50 6.68 22.53 0.15 2.65 15 21 O -0.49 -15.76 12.51 -93.34 -1.17 -16.93 15 22 H 0.26 15.18 8.31 -92.71 -0.77 14.41 15 23 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 15 24 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 15 25 H 0.34 10.63 7.21 -89.69 -0.65 9.99 15 26 H 0.35 8.76 9.06 -89.70 -0.81 7.95 15 27 H 0.15 3.72 6.29 -2.91 -0.02 3.70 15 28 H 0.17 3.09 8.06 -2.91 -0.02 3.07 15 29 H 0.41 8.51 9.06 -74.06 -0.67 7.84 15 Total: -1.00 -68.02 276.74 1.18 -66.83 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: -0.90 Total: 16.74 kcal Atomic # 6 Polarization: -25.25 SS G_CDS: 1.72 Total: -23.53 kcal Atomic # 7 Polarization: -85.21 SS G_CDS: -1.18 Total: -86.39 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: -1.17 Total: -16.93 kcal Atomic # 9 Polarization: -3.72 SS G_CDS: 0.77 Total: -2.95 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.18 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -0.08 Total: -0.96 kcal Total: -68.02 1.18 -66.83 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260903577.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.113 kcal (2) G-P(sol) polarization free energy of solvation -68.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds