Wall clock time and date at job start Mon Mar 30 2020 06:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.08002 * 120.00482 * 359.72746 * 7 2 1 9 9 C 1.50702 * 120.00072 * 179.72119 * 7 2 1 10 10 C 1.52999 * 109.47522 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.47090 * 55.00008 * 10 9 7 12 12 N 1.46904 * 109.46953 * 295.00224 * 10 9 7 13 13 C 1.50701 * 109.47363 * 175.00088 * 10 9 7 14 14 C 1.38220 * 120.00779 * 99.71850 * 13 10 9 15 15 C 1.38319 * 120.08216 * 179.74874 * 14 13 10 16 16 Cl 1.73602 * 119.95186 * 180.28383 * 15 14 13 17 17 C 1.38403 * 120.09880 * 0.55284 * 15 14 13 18 18 C 1.38291 * 120.01329 * 359.70836 * 17 15 14 19 19 F 1.35098 * 120.03675 * 180.02562 * 18 17 15 20 20 C 1.38609 * 120.00767 * 280.00596 * 13 10 9 21 21 O 1.35969 * 120.05182 * 359.94741 * 20 13 10 22 22 H 0.96999 * 120.00128 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47047 * 300.00890 * 9 7 2 24 24 H 1.09001 * 109.46702 * 60.00291 * 9 7 2 25 25 H 1.00896 * 110.99531 * 299.99945 * 12 10 9 26 26 H 1.00903 * 110.99778 * 63.95473 * 12 10 9 27 27 H 1.08007 * 119.96222 * 0.03402 * 14 13 10 28 28 H 1.08001 * 119.99223 * 179.72098 * 17 15 14 29 29 H 0.96702 * 114.00039 * 90.00594 * 21 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 1.4645 -2.1294 -0.0058 9 6 3.5115 -1.1940 -0.0121 10 6 4.0215 -2.6365 -0.0183 11 1 3.5834 -3.1732 -0.8598 12 7 3.6381 -3.2968 1.2367 13 6 5.5229 -2.6380 -0.1485 14 6 6.3137 -2.8097 0.9721 15 6 7.6918 -2.8164 0.8536 16 17 8.6817 -3.0397 2.2622 17 6 8.2829 -2.6399 -0.3853 18 6 7.4956 -2.4624 -1.5083 19 9 8.0720 -2.2906 -2.7180 20 6 6.1112 -2.4612 -1.3910 21 8 5.3346 -2.2874 -2.4935 22 1 -0.4850 0.8400 0.0004 23 1 3.8711 -0.6780 -0.9023 24 1 3.8785 -0.6824 0.8776 25 1 4.0323 -2.8177 2.0323 26 1 2.6347 -3.3662 1.3169 27 1 5.8550 -2.9433 1.9407 28 1 9.3591 -2.6410 -0.4751 29 1 5.1214 -1.3633 -2.6828 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260903581.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:47 Heat of formation + Delta-G solvation = -77.527821 kcal Electronic energy + Delta-G solvation = -17052.429143 eV Core-core repulsion = 13915.716364 eV Total energy + Delta-G solvation = -3136.712779 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.052 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.92120 -39.90294 -37.18911 -36.24932 -35.47025 -32.58336 -30.15103 -29.55038 -28.70006 -25.00704 -22.63057 -22.25230 -20.09905 -18.45614 -17.55912 -17.08865 -16.66541 -16.02509 -15.50863 -14.96657 -14.64986 -14.24453 -14.05353 -13.42907 -13.34795 -13.08055 -12.72899 -12.50694 -12.28454 -11.99202 -11.33183 -11.18349 -10.99065 -10.69325 -10.48713 -10.46928 -9.93449 -9.40855 -8.81591 -8.72358 -8.53060 -8.00296 -6.22139 -4.23088 0.89351 1.06118 1.95477 3.16638 3.25781 3.26225 3.31673 3.98235 4.27895 4.31165 4.63703 4.90484 5.06828 5.10995 5.38998 5.47179 5.68208 5.80757 6.02463 6.06552 6.26853 6.44773 6.57431 6.82271 7.04160 7.53593 7.67446 7.74292 8.03906 8.30884 8.80048 9.38745 10.90334 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.021618 B = 0.006474 C = 0.005813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.895542 B = 4323.680402 C = 4815.962757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.072 3.928 3 Si 0.879 3.121 4 H -0.277 1.277 5 H -0.268 1.268 6 H -0.286 1.286 7 C -0.527 4.527 8 H 0.076 0.924 9 C -0.033 4.033 10 C 0.139 3.861 11 H 0.098 0.902 12 N -0.839 5.839 13 C -0.043 4.043 14 C -0.094 4.094 15 C -0.017 4.017 16 Cl -0.064 7.064 17 C -0.149 4.149 18 C 0.083 3.917 19 F -0.130 7.130 20 C 0.083 3.917 21 O -0.479 6.479 22 H 0.265 0.735 23 H 0.016 0.984 24 H 0.013 0.987 25 H 0.329 0.671 26 H 0.357 0.643 27 H 0.148 0.852 28 H 0.145 0.855 29 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.502 -3.456 1.137 15.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.130 4.130 3 Si 0.706 3.294 4 H -0.203 1.203 5 H -0.193 1.193 6 H -0.212 1.212 7 C -0.564 4.564 8 H 0.094 0.906 9 C -0.072 4.072 10 C 0.027 3.973 11 H 0.116 0.884 12 N -0.369 5.369 13 C -0.044 4.044 14 C -0.113 4.113 15 C -0.044 4.044 16 Cl -0.035 7.035 17 C -0.168 4.168 18 C 0.063 3.937 19 F -0.109 7.109 20 C 0.037 3.963 21 O -0.290 6.290 22 H 0.075 0.925 23 H 0.035 0.965 24 H 0.032 0.968 25 H 0.141 0.859 26 H 0.172 0.828 27 H 0.166 0.834 28 H 0.162 0.838 29 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 15.841 -4.598 0.880 16.519 hybrid contribution 0.105 2.474 0.087 2.477 sum 15.946 -2.125 0.967 16.116 Atomic orbital electron populations 1.69896 1.06262 1.27150 1.49951 1.24991 0.94692 0.99110 0.94230 0.86805 0.80205 0.83775 0.78588 1.20263 1.19266 1.21198 1.20969 0.88651 0.94690 1.52139 0.90571 1.20259 0.98032 0.92198 0.96715 1.20261 0.86410 0.96297 0.94307 0.88370 1.59251 1.18146 1.56224 1.03300 1.20440 0.98088 0.95410 0.90495 1.20905 0.90335 0.99772 1.00305 1.20548 0.91580 1.04518 0.87779 1.98367 1.69892 1.95456 1.39779 1.20738 1.00838 1.05293 0.89980 1.17780 0.90290 1.04756 0.80847 1.91497 1.84629 1.92922 1.41815 1.18286 0.87177 1.03419 0.87457 1.84817 1.69403 1.32429 1.42374 0.92485 0.96542 0.96832 0.85941 0.82790 0.83440 0.83767 0.74618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.05 13.96 55.43 0.77 -25.28 15 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 15 3 Si 0.88 20.44 27.47 -169.99 -4.67 15.77 15 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 15 5 H -0.27 -5.93 6.54 56.52 0.37 -5.56 15 6 H -0.29 -6.69 7.11 56.52 0.40 -6.28 15 7 C -0.53 -13.57 9.10 -34.44 -0.31 -13.88 15 8 H 0.08 2.11 7.39 -52.49 -0.39 1.72 15 9 C -0.03 -0.71 3.67 -27.88 -0.10 -0.81 15 10 C 0.14 2.55 2.64 -68.86 -0.18 2.37 15 11 H 0.10 1.96 7.85 -51.93 -0.41 1.55 15 12 N -0.84 -14.19 8.68 -5.65 -0.05 -14.24 15 13 C -0.04 -0.70 5.10 -104.49 -0.53 -1.23 15 14 C -0.09 -1.36 9.03 -39.56 -0.36 -1.72 15 15 C -0.02 -0.23 6.32 -39.49 -0.25 -0.48 15 16 Cl -0.06 -0.73 28.95 -51.86 -1.50 -2.24 15 17 C -0.15 -1.91 9.80 -39.50 -0.39 -2.30 15 18 C 0.08 1.21 7.31 -39.30 -0.29 0.93 15 19 F -0.13 -1.90 17.11 2.25 0.04 -1.87 15 20 C 0.08 1.32 6.68 -39.18 -0.26 1.06 15 21 O -0.48 -7.60 12.52 -19.64 -0.25 -7.84 15 22 H 0.27 7.28 8.31 -40.82 -0.34 6.94 15 23 H 0.02 0.35 6.68 -51.93 -0.35 0.00 15 24 H 0.01 0.29 7.57 -51.93 -0.39 -0.10 15 25 H 0.33 5.08 7.28 -39.29 -0.29 4.79 15 26 H 0.36 6.43 7.90 -39.29 -0.31 6.12 15 27 H 0.15 1.98 6.25 -52.48 -0.33 1.66 15 28 H 0.14 1.52 8.06 -52.49 -0.42 1.10 15 29 H 0.40 5.06 8.62 45.56 0.39 5.45 15 LS Contribution 270.47 15.07 4.08 4.08 Total: -1.00 -28.41 270.47 -6.01 -34.42 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -1.66 Total: 11.40 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: -2.77 Total: -14.20 kcal Atomic # 7 Polarization: -40.24 SS G_CDS: 0.72 Total: -39.52 kcal Atomic # 8 Polarization: -7.60 SS G_CDS: -0.25 Total: -7.84 kcal Atomic # 9 Polarization: -1.90 SS G_CDS: 0.04 Total: -1.87 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -4.67 Total: 15.77 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -1.50 Total: -2.24 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -28.41 -6.01 -34.42 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260903581.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.111 kcal (2) G-P(sol) polarization free energy of solvation -28.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds