Wall clock time and date at job start Mon Mar 30 2020 06:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.08002 * 120.00482 * 359.72746 * 7 2 1 9 9 C 1.50702 * 120.00072 * 179.72119 * 7 2 1 10 10 C 1.52999 * 109.47522 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.47090 * 55.00008 * 10 9 7 12 12 N 1.46904 * 109.46953 * 295.00224 * 10 9 7 13 13 C 1.50701 * 109.47363 * 175.00088 * 10 9 7 14 14 C 1.38220 * 120.00779 * 99.71850 * 13 10 9 15 15 C 1.38319 * 120.08216 * 179.74874 * 14 13 10 16 16 Cl 1.73602 * 119.95186 * 180.28383 * 15 14 13 17 17 C 1.38403 * 120.09880 * 0.55284 * 15 14 13 18 18 C 1.38291 * 120.01329 * 359.70836 * 17 15 14 19 19 F 1.35098 * 120.03675 * 180.02562 * 18 17 15 20 20 C 1.38609 * 120.00767 * 280.00596 * 13 10 9 21 21 O 1.35969 * 120.05182 * 359.94741 * 20 13 10 22 22 H 0.96999 * 120.00128 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47047 * 300.00890 * 9 7 2 24 24 H 1.09001 * 109.46702 * 60.00291 * 9 7 2 25 25 H 1.00896 * 110.99531 * 299.99945 * 12 10 9 26 26 H 1.00903 * 110.99778 * 63.95473 * 12 10 9 27 27 H 1.08007 * 119.96222 * 0.03402 * 14 13 10 28 28 H 1.08001 * 119.99223 * 179.72098 * 17 15 14 29 29 H 0.96702 * 114.00039 * 90.00594 * 21 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 1.4645 -2.1294 -0.0058 9 6 3.5115 -1.1940 -0.0121 10 6 4.0215 -2.6365 -0.0183 11 1 3.5834 -3.1732 -0.8598 12 7 3.6381 -3.2968 1.2367 13 6 5.5229 -2.6380 -0.1485 14 6 6.3137 -2.8097 0.9721 15 6 7.6918 -2.8164 0.8536 16 17 8.6817 -3.0397 2.2622 17 6 8.2829 -2.6399 -0.3853 18 6 7.4956 -2.4624 -1.5083 19 9 8.0720 -2.2906 -2.7180 20 6 6.1112 -2.4612 -1.3910 21 8 5.3346 -2.2874 -2.4935 22 1 -0.4850 0.8400 0.0004 23 1 3.8711 -0.6780 -0.9023 24 1 3.8785 -0.6824 0.8776 25 1 4.0323 -2.8177 2.0323 26 1 2.6347 -3.3662 1.3169 27 1 5.8550 -2.9433 1.9407 28 1 9.3591 -2.6410 -0.4751 29 1 5.1214 -1.3633 -2.6828 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260903581.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:47 Heat of formation + Delta-G solvation = -97.827945 kcal Electronic energy + Delta-G solvation = -17053.309422 eV Core-core repulsion = 13915.716364 eV Total energy + Delta-G solvation = -3137.593058 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.052 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -50.03730 -41.08971 -38.26607 -37.50491 -36.76652 -34.53930 -31.39819 -30.79123 -30.32346 -26.53622 -23.80813 -23.76000 -21.56063 -19.67307 -19.20902 -18.25203 -18.12032 -17.19576 -16.69329 -16.42616 -16.12576 -15.59344 -15.36433 -15.05911 -14.69917 -14.29883 -14.17288 -13.88438 -13.65527 -13.41720 -12.87550 -12.61272 -12.22708 -12.05267 -11.94649 -11.90235 -11.67832 -11.28020 -10.79630 -9.99010 -9.66292 -9.41756 -8.30198 -6.34813 -0.22175 -0.06154 0.94202 1.34020 1.36446 1.45726 2.19271 2.33098 2.85644 3.05167 3.17182 3.46970 3.79116 3.94995 4.10034 4.30099 4.39607 4.57813 4.70391 4.77732 4.94512 5.07479 5.12623 5.42897 5.46040 5.59535 6.20577 6.30871 6.58162 6.64905 6.72971 7.30157 8.85495 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.021618 B = 0.006474 C = 0.005813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.895542 B = 4323.680402 C = 4815.962757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.012 3.988 3 Si 0.943 3.057 4 H -0.270 1.270 5 H -0.246 1.246 6 H -0.289 1.289 7 C -0.523 4.523 8 H 0.042 0.958 9 C -0.028 4.028 10 C 0.151 3.849 11 H 0.075 0.925 12 N -0.832 5.832 13 C -0.061 4.061 14 C -0.091 4.091 15 C -0.017 4.017 16 Cl -0.044 7.044 17 C -0.132 4.132 18 C 0.077 3.923 19 F -0.131 7.131 20 C 0.074 3.926 21 O -0.494 6.494 22 H 0.265 0.735 23 H 0.022 0.978 24 H 0.020 0.980 25 H 0.339 0.661 26 H 0.349 0.651 27 H 0.156 0.844 28 H 0.172 0.828 29 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.336 -2.939 1.715 18.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.186 4.186 3 Si 0.767 3.233 4 H -0.195 1.195 5 H -0.170 1.170 6 H -0.215 1.215 7 C -0.561 4.561 8 H 0.060 0.940 9 C -0.067 4.067 10 C 0.039 3.961 11 H 0.093 0.907 12 N -0.362 5.362 13 C -0.063 4.063 14 C -0.110 4.110 15 C -0.044 4.044 16 Cl -0.015 7.015 17 C -0.151 4.151 18 C 0.057 3.943 19 F -0.110 7.110 20 C 0.027 3.973 21 O -0.306 6.306 22 H 0.074 0.926 23 H 0.040 0.960 24 H 0.039 0.961 25 H 0.153 0.847 26 H 0.163 0.837 27 H 0.173 0.827 28 H 0.189 0.811 29 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 18.709 -4.091 1.463 19.207 hybrid contribution -0.741 2.208 -0.065 2.330 sum 17.968 -1.882 1.398 18.121 Atomic orbital electron populations 1.70050 1.08207 1.28049 1.52285 1.25876 0.95400 1.03072 0.94231 0.85773 0.79561 0.78957 0.78993 1.19535 1.16995 1.21523 1.21263 0.91105 0.93282 1.50456 0.93951 1.20183 0.94860 0.94613 0.97017 1.19920 0.88165 0.94021 0.94025 0.90736 1.59221 1.17524 1.56053 1.03358 1.20169 0.96596 0.97997 0.91524 1.20985 0.90977 0.99070 0.99975 1.20556 0.91328 1.03825 0.88660 1.98382 1.69141 1.95277 1.38661 1.21014 1.02064 1.02947 0.89089 1.17806 0.89871 1.05268 0.81332 1.91495 1.84495 1.92992 1.42020 1.18430 0.87876 1.03742 0.87231 1.84784 1.69705 1.33575 1.42585 0.92573 0.95973 0.96142 0.84742 0.83725 0.82655 0.81064 0.73417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.51 13.96 21.45 0.30 -56.21 15 2 C 0.01 0.65 5.47 84.65 0.46 1.11 15 3 Si 0.94 41.64 27.47 68.60 1.88 43.52 15 4 H -0.27 -11.58 7.11 99.48 0.71 -10.87 15 5 H -0.25 -9.93 6.54 99.48 0.65 -9.28 15 6 H -0.29 -12.84 7.11 99.48 0.71 -12.13 15 7 C -0.52 -27.37 9.10 25.60 0.23 -27.14 15 8 H 0.04 2.45 7.39 -2.91 -0.02 2.42 15 9 C -0.03 -1.16 3.67 29.85 0.11 -1.05 15 10 C 0.15 5.48 2.64 44.17 0.12 5.60 15 11 H 0.07 3.04 7.85 -2.39 -0.02 3.03 15 12 N -0.83 -27.80 8.68 -171.79 -1.49 -29.29 15 13 C -0.06 -1.90 5.10 -19.78 -0.10 -2.01 15 14 C -0.09 -2.41 9.03 22.28 0.20 -2.21 15 15 C -0.02 -0.39 6.32 22.33 0.14 -0.25 15 16 Cl -0.04 -0.86 28.95 -2.72 -0.08 -0.94 15 17 C -0.13 -2.94 9.80 22.32 0.22 -2.72 15 18 C 0.08 2.06 7.31 22.45 0.16 2.23 15 19 F -0.13 -3.56 17.11 44.97 0.77 -2.79 15 20 C 0.07 2.23 6.68 22.53 0.15 2.38 15 21 O -0.49 -15.31 12.52 -93.20 -1.17 -16.48 15 22 H 0.27 14.94 8.31 -92.71 -0.77 14.17 15 23 H 0.02 0.90 6.68 -2.39 -0.02 0.89 15 24 H 0.02 0.83 7.57 -2.39 -0.02 0.82 15 25 H 0.34 10.06 7.28 -89.70 -0.65 9.40 15 26 H 0.35 12.79 7.90 -89.69 -0.71 12.08 15 27 H 0.16 3.78 6.25 -2.91 -0.02 3.76 15 28 H 0.17 2.87 8.06 -2.91 -0.02 2.84 15 29 H 0.41 10.06 8.62 -74.06 -0.64 9.42 15 Total: -1.00 -60.76 270.47 1.09 -59.67 By element: Atomic # 1 Polarization: 27.38 SS G_CDS: -0.82 Total: 26.56 kcal Atomic # 6 Polarization: -25.75 SS G_CDS: 1.70 Total: -24.05 kcal Atomic # 7 Polarization: -84.31 SS G_CDS: -1.19 Total: -85.50 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: -1.17 Total: -16.48 kcal Atomic # 9 Polarization: -3.56 SS G_CDS: 0.77 Total: -2.79 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 1.88 Total: 43.52 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -0.08 Total: -0.94 kcal Total: -60.76 1.09 -59.67 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260903581.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.155 kcal (2) G-P(sol) polarization free energy of solvation -60.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds