Wall clock time and date at job start Mon Mar 30 2020 07:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.28731 * 121.08268 * 2 1 4 4 S 1.69398 * 108.98670 * 180.02562 * 3 2 1 5 5 C 1.76518 * 96.11561 * 0.02562 * 4 3 2 6 6 C 1.38777 * 133.54445 * 179.97438 * 5 4 3 7 7 C 1.36721 * 119.75519 * 180.02562 * 6 5 4 8 8 C 1.50703 * 119.92961 * 179.97438 * 7 6 5 9 9 C 1.50699 * 115.54576 * 54.74729 * 8 7 6 10 10 H 1.08001 * 120.00210 * 268.74274 * 9 8 7 11 11 C 1.37878 * 119.99879 * 88.74441 * 9 8 7 12 12 N 1.31510 * 120.00126 * 169.94912 * 11 9 8 13 13 Si 1.86799 * 120.00095 * 349.94732 * 11 9 8 14 14 H 1.48505 * 109.47093 * 85.14064 * 13 11 9 15 15 H 1.48498 * 109.47387 * 205.14148 * 13 11 9 16 16 H 1.48503 * 109.47155 * 325.13947 * 13 11 9 17 17 C 1.52990 * 117.50090 * 269.07981 * 8 7 6 18 18 C 1.52992 * 117.50075 * 200.41798 * 8 7 6 19 19 C 1.38974 * 120.14569 * 0.02562 * 7 6 5 20 20 C 1.36038 * 121.16154 * 0.26986 * 19 7 6 21 21 C 1.40808 * 105.52028 * 359.97438 * 5 4 3 22 22 H 1.08999 * 109.47165 * 269.97370 * 1 2 3 23 23 H 1.09004 * 109.47070 * 29.97905 * 1 2 3 24 24 H 1.09001 * 109.46432 * 149.97486 * 1 2 3 25 25 H 1.08000 * 120.12975 * 0.02815 * 6 5 4 26 26 H 0.97003 * 120.00354 * 179.97438 * 12 11 9 27 27 H 1.09002 * 117.49955 * 359.97438 * 17 8 7 28 28 H 1.08998 * 117.50342 * 145.01621 * 17 8 7 29 29 H 1.08999 * 117.49770 * 214.98464 * 18 8 7 30 30 H 1.09008 * 117.49720 * 359.97438 * 18 8 7 31 31 H 1.08002 * 119.41645 * 180.02562 * 19 7 6 32 32 H 1.08010 * 119.89324 * 179.70153 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1716 1.1025 0.0000 4 16 3.8280 0.7475 -0.0007 5 6 3.6441 -1.0081 -0.0018 6 6 4.5449 -2.0637 -0.0033 7 6 4.0824 -3.3504 -0.0044 8 6 5.0572 -4.4997 -0.0065 9 6 6.0769 -4.4890 1.1030 10 1 7.0324 -4.0081 0.9538 11 6 5.7902 -5.0933 2.3087 12 7 6.7398 -5.2595 3.2032 13 14 4.0529 -5.6758 2.6717 14 1 3.8594 -7.0365 2.1093 15 1 3.8399 -5.7125 4.1409 16 1 3.0782 -4.7414 2.0535 17 6 5.4964 -5.0510 -1.3643 18 6 4.5438 -5.8605 -0.4811 19 6 2.7154 -3.6007 -0.0046 20 6 1.8133 -2.5824 -0.0093 21 6 2.2554 -1.2414 -0.0010 22 1 -0.3633 -0.0005 1.0276 23 1 -0.3633 0.8902 -0.5135 24 1 -0.3632 -0.8898 -0.5142 25 1 5.6073 -1.8698 -0.0034 26 1 6.5380 -5.6842 4.0516 27 1 5.0800 -4.5827 -2.2562 28 1 6.5228 -5.4064 -1.4552 29 1 4.9439 -6.7482 0.0090 30 1 3.5008 -5.9247 -0.7914 31 1 2.3631 -4.6216 -0.0051 32 1 0.7555 -2.8004 -0.0142 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260905143.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:20 Heat of formation + Delta-G solvation = 70.417479 kcal Electronic energy + Delta-G solvation = -16601.709139 eV Core-core repulsion = 14040.057775 eV Total energy + Delta-G solvation = -2561.651364 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.79591 -37.67789 -35.44829 -32.22976 -31.02455 -29.79017 -29.27377 -25.96931 -23.35480 -22.82243 -21.34069 -20.23256 -19.33780 -17.89438 -16.74966 -15.46390 -15.08841 -15.07312 -14.68153 -14.54468 -13.69821 -13.46995 -13.06040 -12.82146 -12.72680 -12.47589 -11.88935 -11.71808 -11.61928 -11.23917 -10.84617 -10.55284 -10.48770 -10.25348 -10.15522 -9.87658 -9.57451 -9.41712 -8.79365 -8.66505 -8.06485 -7.50827 -6.23848 -4.27440 0.84503 1.60115 1.72794 2.09285 2.42236 3.23041 3.33364 3.37167 4.00859 4.34542 4.49864 4.73858 4.87803 5.02292 5.20412 5.32504 5.37051 5.43711 5.56540 5.71943 5.84585 5.90979 5.97036 6.06850 6.22515 6.34634 6.40007 6.44362 6.62791 6.82686 6.87092 6.99595 7.11296 7.29840 7.58091 8.34126 8.78359 9.38571 10.86731 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.024822 B = 0.006978 C = 0.006765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.781175 B = 4011.901080 C = 4138.229507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.159 3.841 3 N -0.459 5.459 4 S 0.156 5.844 5 C -0.121 4.121 6 C -0.068 4.068 7 C 0.026 3.974 8 C 0.023 3.977 9 C -0.489 4.489 10 H 0.081 0.919 11 C 0.084 3.916 12 N -0.888 5.888 13 Si 0.865 3.135 14 H -0.273 1.273 15 H -0.294 1.294 16 H -0.246 1.246 17 C -0.166 4.166 18 C -0.196 4.196 19 C -0.121 4.121 20 C -0.060 4.060 21 C -0.160 4.160 22 H 0.084 0.916 23 H 0.078 0.922 24 H 0.081 0.919 25 H 0.136 0.864 26 H 0.267 0.733 27 H 0.075 0.925 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.076 0.924 31 H 0.126 0.874 32 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.075 4.948 -7.146 14.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.031 4.031 3 N -0.272 5.272 4 S 0.311 5.689 5 C -0.240 4.240 6 C -0.091 4.091 7 C 0.021 3.979 8 C 0.022 3.978 9 C -0.526 4.526 10 H 0.099 0.901 11 C -0.120 4.120 12 N -0.524 5.524 13 Si 0.692 3.308 14 H -0.199 1.199 15 H -0.220 1.220 16 H -0.169 1.169 17 C -0.203 4.203 18 C -0.233 4.233 19 C -0.141 4.141 20 C -0.082 4.082 21 C -0.170 4.170 22 H 0.102 0.898 23 H 0.097 0.903 24 H 0.100 0.900 25 H 0.154 0.846 26 H 0.077 0.923 27 H 0.093 0.907 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.095 0.905 31 H 0.144 0.856 32 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -10.147 7.126 -6.946 14.212 hybrid contribution -1.539 -2.002 0.538 2.582 sum -11.686 5.124 -6.408 14.278 Atomic orbital electron populations 1.20608 0.86827 1.03770 1.03606 1.22489 0.98042 0.87419 0.95138 1.75669 1.01744 1.26423 1.23324 1.84679 1.07673 0.97681 1.78875 1.23382 0.96612 0.98748 1.05306 1.19772 0.99031 0.89634 1.00693 1.19825 0.93253 0.94637 0.90214 1.18255 0.95924 0.88025 0.95594 1.20154 0.99644 1.37364 0.95390 0.90072 1.24958 0.96911 0.94354 0.95774 1.69895 1.32444 1.42106 1.07925 0.87054 0.86353 0.80215 0.77202 1.19908 1.22049 1.16945 1.22878 0.99516 1.04510 0.93444 1.23074 0.97585 0.97112 1.05524 1.20796 0.93133 0.99203 1.00926 1.20473 0.99409 0.89557 0.98805 1.20009 0.91556 0.94427 1.11046 0.89781 0.90266 0.90013 0.84617 0.92304 0.90697 0.88943 0.88912 0.90540 0.85582 0.85771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.89 10.16 36.01 0.37 -0.53 16 2 C 0.16 2.40 6.88 -81.23 -0.56 1.84 16 3 N -0.46 -7.66 11.84 34.00 0.40 -7.25 16 4 S 0.16 2.66 23.86 -107.50 -2.57 0.09 16 5 C -0.12 -2.22 6.71 -38.41 -0.26 -2.48 16 6 C -0.07 -1.34 9.41 -39.93 -0.38 -1.72 16 7 C 0.03 0.52 4.62 -104.90 -0.48 0.03 16 8 C 0.02 0.50 1.10 -156.82 -0.17 0.33 16 9 C -0.49 -12.78 9.10 -34.44 -0.31 -13.10 16 10 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 11 C 0.08 2.30 5.45 -17.82 -0.10 2.20 16 12 N -0.89 -25.96 13.96 55.43 0.77 -25.19 16 13 Si 0.86 20.25 25.44 -169.99 -4.33 15.92 16 14 H -0.27 -6.20 7.09 56.52 0.40 -5.79 16 15 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 16 H -0.25 -5.34 4.60 56.52 0.26 -5.08 16 17 C -0.17 -3.12 9.94 -26.70 -0.27 -3.39 16 18 C -0.20 -3.80 7.36 -26.70 -0.20 -3.99 16 19 C -0.12 -2.13 7.25 -40.10 -0.29 -2.42 16 20 C -0.06 -0.94 9.72 -39.25 -0.38 -1.32 16 21 C -0.16 -2.68 6.04 -105.14 -0.64 -3.32 16 22 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.08 0.69 7.53 -51.93 -0.39 0.30 16 25 H 0.14 2.67 8.05 -52.49 -0.42 2.25 16 26 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 27 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.09 1.75 8.14 -51.93 -0.42 1.32 16 29 H 0.09 1.91 7.57 -51.93 -0.39 1.52 16 30 H 0.08 1.29 6.57 -51.92 -0.34 0.95 16 31 H 0.13 2.06 6.19 -52.49 -0.32 1.74 16 32 H 0.12 1.47 7.63 -52.48 -0.40 1.07 16 LS Contribution 280.13 15.07 4.22 4.22 Total: -1.00 -29.26 280.13 -8.82 -38.08 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -3.66 Total: 1.99 kcal Atomic # 6 Polarization: -24.20 SS G_CDS: -3.66 Total: -27.86 kcal Atomic # 7 Polarization: -33.62 SS G_CDS: 1.18 Total: -32.44 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -4.33 Total: 15.92 kcal Atomic # 16 Polarization: 2.66 SS G_CDS: -2.57 Total: 0.09 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -29.26 -8.82 -38.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260905143.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.495 kcal (2) G-P(sol) polarization free energy of solvation -29.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds