Wall clock time and date at job start Mon Mar 30 2020 07:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.76200 * 103.00317 * 2 1 4 4 C 1.38881 * 120.06840 * 0.02562 * 3 2 1 5 5 C 1.38329 * 119.91850 * 179.97438 * 4 3 2 6 6 F 1.35094 * 119.96776 * 180.02562 * 5 4 3 7 7 C 1.38501 * 120.06655 * 359.97438 * 5 4 3 8 8 C 1.50700 * 119.92727 * 179.97438 * 7 5 4 9 9 H 1.08994 * 109.47236 * 325.00242 * 8 7 5 10 10 N 1.46899 * 109.47124 * 205.00447 * 8 7 5 11 11 C 1.50690 * 109.47070 * 85.00763 * 8 7 5 12 12 H 1.08001 * 120.00347 * 24.74946 * 11 8 7 13 13 C 1.37882 * 120.00257 * 204.75307 * 11 8 7 14 14 N 1.31520 * 119.99602 * 357.99452 * 13 11 8 15 15 Si 1.86793 * 120.00298 * 177.99129 * 13 11 8 16 16 H 1.48504 * 109.47291 * 179.97438 * 15 13 11 17 17 H 1.48500 * 109.47322 * 300.00101 * 15 13 11 18 18 H 1.48499 * 109.47083 * 60.00248 * 15 13 11 19 19 C 1.38295 * 120.14533 * 0.26848 * 7 5 4 20 20 C 1.38249 * 120.07872 * 359.47902 * 19 7 5 21 21 F 1.35106 * 120.03606 * 180.23693 * 20 19 7 22 22 H 1.09007 * 109.47148 * 299.99826 * 1 2 3 23 23 H 1.08996 * 109.47574 * 59.99861 * 1 2 3 24 24 H 1.09001 * 109.47122 * 180.02562 * 1 2 3 25 25 H 1.07999 * 120.03702 * 359.95563 * 4 3 2 26 26 H 1.00902 * 111.00548 * 173.80512 * 10 8 7 27 27 H 1.00898 * 111.00445 * 297.76432 * 10 8 7 28 28 H 0.97001 * 119.99701 * 354.71539 * 14 13 11 29 29 H 1.08000 * 119.96089 * 179.74033 * 19 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1959 2.6652 0.0005 5 6 1.5107 4.0122 0.0011 6 9 0.5246 4.9357 0.0021 7 6 2.8358 4.4152 0.0016 8 6 3.1751 5.8835 0.0016 9 1 2.4370 6.4270 -0.5881 10 7 4.5086 6.0779 -0.5832 11 6 3.1671 6.4009 1.4169 12 1 3.3399 5.7238 2.2404 13 6 2.9393 7.7387 1.6606 14 7 2.7681 8.5702 0.6561 15 14 2.8736 8.3701 3.4174 16 1 2.6180 9.8329 3.4085 17 1 1.7816 7.6808 4.1507 18 1 4.1696 8.0987 4.0897 19 6 3.8481 3.4731 -0.0040 20 6 3.5404 2.1253 0.0007 21 9 4.5302 1.2056 0.0001 22 1 -0.3634 0.5138 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 0.1625 2.3514 0.0002 26 1 4.7182 7.0593 -0.6876 27 1 5.2158 5.6135 -0.0335 28 1 2.8779 8.2583 -0.2558 29 1 4.8804 3.7906 -0.0078 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260931648.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:44 Heat of formation + Delta-G solvation = -90.141027 kcal Electronic energy + Delta-G solvation = -17048.807493 eV Core-core repulsion = 13925.964260 eV Total energy + Delta-G solvation = -3122.843233 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.054 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -50.03154 -49.94976 -40.11054 -37.00291 -33.84210 -31.82122 -31.09532 -29.70280 -27.74969 -25.43890 -23.78390 -22.49485 -19.52847 -19.17254 -18.53163 -18.19642 -17.18799 -16.96861 -16.47340 -16.33676 -15.74293 -15.42293 -15.16343 -15.00969 -14.79170 -14.58663 -14.55299 -14.05291 -13.81835 -13.32131 -13.10269 -12.78696 -12.46288 -12.04997 -11.85328 -11.62476 -11.37590 -10.89351 -10.59532 -9.84835 -9.42270 -8.74462 -8.38786 -6.50262 -0.19746 -0.10706 0.34357 1.31744 1.50135 1.55248 1.75776 2.20465 2.50855 2.97180 3.07922 3.23538 3.52265 3.63661 3.98129 4.20683 4.24218 4.28154 4.34412 4.60035 4.67283 4.84570 4.88921 4.95477 5.31247 5.62742 5.72449 5.99182 6.41157 6.44479 6.72843 7.29741 8.64759 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.028032 B = 0.006210 C = 0.005767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.626149 B = 4507.427194 C = 4854.049812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 S -0.105 6.105 3 C -0.117 4.117 4 C -0.131 4.131 5 C 0.087 3.913 6 F -0.143 7.143 7 C -0.060 4.060 8 C 0.228 3.772 9 H 0.028 0.972 10 N -0.840 5.840 11 C -0.631 4.631 12 H 0.043 0.957 13 C -0.013 4.013 14 N -0.924 5.924 15 Si 1.110 2.890 16 H -0.283 1.283 17 H -0.277 1.277 18 H -0.269 1.269 19 C -0.104 4.104 20 C 0.098 3.902 21 F -0.129 7.129 22 H 0.094 0.906 23 H 0.095 0.905 24 H 0.137 0.863 25 H 0.171 0.829 26 H 0.332 0.668 27 H 0.332 0.668 28 H 0.262 0.738 29 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.426 -15.297 -0.550 15.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.312 4.312 2 S 0.136 5.864 3 C -0.230 4.230 4 C -0.155 4.155 5 C 0.066 3.934 6 F -0.121 7.121 7 C -0.064 4.064 8 C 0.118 3.882 9 H 0.046 0.954 10 N -0.368 5.368 11 C -0.671 4.671 12 H 0.061 0.939 13 C -0.214 4.214 14 N -0.560 5.560 15 Si 0.932 3.068 16 H -0.208 1.208 17 H -0.202 1.202 18 H -0.194 1.194 19 C -0.125 4.125 20 C 0.073 3.927 21 F -0.108 7.108 22 H 0.112 0.888 23 H 0.114 0.886 24 H 0.155 0.845 25 H 0.188 0.812 26 H 0.143 0.857 27 H 0.144 0.856 28 H 0.073 0.927 29 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -3.367 -15.420 -0.314 15.786 hybrid contribution -0.255 0.685 -0.175 0.752 sum -3.622 -14.734 -0.490 15.181 Atomic orbital electron populations 1.23910 0.91239 1.09218 1.06861 1.85554 1.10133 0.98342 1.92332 1.21590 0.93737 0.99777 1.07917 1.21032 1.00674 0.89342 1.04501 1.17620 0.84738 0.86470 1.04581 1.91464 1.60607 1.66155 1.93910 1.20150 0.91501 0.97695 0.97031 1.17874 0.89564 0.87379 0.93414 0.95444 1.59504 1.04232 1.17600 1.55431 1.22654 1.55126 0.96237 0.93046 0.93860 1.27164 0.91744 0.93893 1.08633 1.70928 1.46357 1.38480 1.00256 0.83008 0.77782 0.75768 0.70226 1.20789 1.20236 1.19401 1.20732 1.01047 0.89431 1.01243 1.17076 0.83793 0.86125 1.05710 1.91487 1.60099 1.65214 1.93961 0.88755 0.88563 0.84455 0.81171 0.85698 0.85585 0.92747 0.83001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.15 113.37 1.04 -1.01 15 2 S -0.10 -2.47 22.17 -56.49 -1.25 -3.73 15 3 C -0.12 -3.60 6.11 22.64 0.14 -3.46 15 4 C -0.13 -4.11 9.34 22.45 0.21 -3.90 15 5 C 0.09 3.50 7.24 22.35 0.16 3.67 15 6 F -0.14 -6.28 16.56 44.97 0.74 -5.53 15 7 C -0.06 -2.57 5.04 -19.79 -0.10 -2.67 15 8 C 0.23 11.18 2.34 43.42 0.10 11.28 15 9 H 0.03 1.54 6.61 -2.39 -0.02 1.52 15 10 N -0.84 -36.73 8.75 -174.97 -1.53 -38.26 15 11 C -0.63 -33.81 8.57 25.60 0.22 -33.59 15 12 H 0.04 2.35 7.81 -2.91 -0.02 2.32 15 13 C -0.01 -0.72 5.46 84.65 0.46 -0.25 15 14 N -0.92 -53.59 13.59 21.45 0.29 -53.30 15 15 Si 1.11 48.65 29.90 68.60 2.05 50.70 15 16 H -0.28 -12.41 7.11 99.48 0.71 -11.71 15 17 H -0.28 -11.62 7.11 99.48 0.71 -10.92 15 18 H -0.27 -10.94 7.11 99.48 0.71 -10.23 15 19 C -0.10 -3.92 9.24 22.29 0.21 -3.72 15 20 C 0.10 3.36 7.28 22.49 0.16 3.52 15 21 F -0.13 -4.24 16.76 44.97 0.75 -3.48 15 22 H 0.09 1.27 7.75 -2.39 -0.02 1.25 15 23 H 0.10 1.24 7.75 -2.39 -0.02 1.23 15 24 H 0.14 1.24 8.14 -2.39 -0.02 1.22 15 25 H 0.17 4.09 5.88 -2.91 -0.02 4.07 15 26 H 0.33 15.07 8.55 -89.69 -0.77 14.31 15 27 H 0.33 13.38 7.31 -89.70 -0.66 12.73 15 28 H 0.26 15.27 6.32 -92.71 -0.59 14.68 15 29 H 0.15 5.40 6.33 -2.91 -0.02 5.39 15 Total: -1.00 -61.52 271.25 3.64 -57.88 By element: Atomic # 1 Polarization: 25.87 SS G_CDS: -0.02 Total: 25.86 kcal Atomic # 6 Polarization: -32.74 SS G_CDS: 2.60 Total: -30.14 kcal Atomic # 7 Polarization: -90.32 SS G_CDS: -1.24 Total: -91.56 kcal Atomic # 9 Polarization: -10.51 SS G_CDS: 1.50 Total: -9.01 kcal Atomic # 14 Polarization: 48.65 SS G_CDS: 2.05 Total: 50.70 kcal Atomic # 16 Polarization: -2.47 SS G_CDS: -1.25 Total: -3.73 kcal Total: -61.52 3.64 -57.88 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260931648.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.258 kcal (2) G-P(sol) polarization free energy of solvation -61.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds