Wall clock time and date at job start Mon Mar 30 2020 07:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.76195 * 102.99788 * 2 1 4 4 C 1.38876 * 120.07437 * 359.97438 * 3 2 1 5 5 C 1.38326 * 119.92023 * 179.72847 * 4 3 2 6 6 F 1.35102 * 119.97127 * 180.29295 * 5 4 3 7 7 C 1.38506 * 120.06303 * 0.56781 * 5 4 3 8 8 C 1.50700 * 119.92421 * 179.72968 * 7 5 4 9 9 H 1.08994 * 109.47551 * 39.72201 * 8 7 5 10 10 N 1.46900 * 109.47395 * 159.72663 * 8 7 5 11 11 C 1.50702 * 109.46869 * 279.72256 * 8 7 5 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 8 7 13 13 C 1.37884 * 119.99942 * 179.72213 * 11 8 7 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 8 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 8 16 16 H 1.48501 * 109.47188 * 90.00793 * 15 13 11 17 17 H 1.48501 * 109.47085 * 210.00372 * 15 13 11 18 18 H 1.48498 * 109.47634 * 330.00608 * 15 13 11 19 19 C 1.38284 * 120.14689 * 359.45313 * 7 5 4 20 20 C 1.38252 * 120.07982 * 0.24647 * 19 7 5 21 21 F 1.35099 * 120.03117 * 180.02562 * 20 19 7 22 22 H 1.08998 * 109.47088 * 60.00113 * 1 2 3 23 23 H 1.09008 * 109.46907 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.46998 * 299.99998 * 1 2 3 25 25 H 1.08002 * 120.03586 * 359.97438 * 4 3 2 26 26 H 1.00907 * 110.99792 * 296.04461 * 10 8 7 27 27 H 1.00903 * 111.00086 * 59.99217 * 10 8 7 28 28 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 29 29 H 1.08003 * 119.95777 * 180.27834 * 19 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.1959 2.6652 -0.0005 5 6 1.5106 4.0122 0.0051 6 9 0.5245 4.9357 0.0106 7 6 2.8357 4.4151 -0.0005 8 6 3.1750 5.8834 -0.0005 9 1 2.4898 6.4147 0.6600 10 7 4.5533 6.0676 0.4733 11 6 3.0479 6.4284 -1.3997 12 1 2.7507 5.7768 -2.2081 13 6 3.3049 7.7603 -1.6469 14 7 3.6665 8.5539 -0.6624 15 14 3.1399 8.4374 -3.3799 16 1 1.7523 8.9223 -3.5919 17 1 4.0910 9.5629 -3.5643 18 1 3.4450 7.3656 -4.3614 19 6 3.8481 3.4731 -0.0004 20 6 3.5404 2.1253 0.0001 21 9 4.5302 1.2058 0.0007 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0278 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 0.1624 2.3514 -0.0014 26 1 4.6489 5.7689 1.4324 27 1 5.2082 5.5841 -0.1229 28 1 3.8477 9.4908 -0.8363 29 1 4.8803 3.7907 -0.0003 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260931653.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:47 Heat of formation + Delta-G solvation = -60.774187 kcal Electronic energy + Delta-G solvation = -17008.306505 eV Core-core repulsion = 13886.736714 eV Total energy + Delta-G solvation = -3121.569791 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.054 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.69814 -48.33333 -38.65943 -34.82965 -31.93907 -30.33402 -29.51260 -28.80303 -26.26829 -23.71561 -22.28162 -20.56205 -18.09229 -16.93431 -16.89101 -16.55229 -15.76222 -15.53620 -14.84799 -14.65119 -14.43740 -14.04078 -13.83879 -13.83612 -13.72549 -13.15945 -12.78154 -12.44196 -12.12021 -11.84849 -11.30991 -11.13089 -10.84179 -10.73393 -10.37894 -9.99769 -9.68486 -8.98282 -8.50393 -8.44799 -7.35020 -7.23737 -5.95968 -4.12386 1.22398 1.26971 1.40978 2.27520 3.30722 3.37500 3.40093 3.64661 4.33196 4.43671 4.68116 4.83623 4.89096 4.89916 5.26081 5.31630 5.34665 5.50072 5.67522 5.94846 6.10896 6.26405 6.43185 6.50152 7.09759 7.26412 7.80617 8.02706 8.46404 8.84205 9.00448 9.56709 11.08196 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.028910 B = 0.006094 C = 0.005660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.277238 B = 4593.291714 C = 4945.514665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 S -0.103 6.103 3 C -0.124 4.124 4 C -0.146 4.146 5 C 0.113 3.887 6 F -0.124 7.124 7 C -0.078 4.078 8 C 0.256 3.744 9 H 0.060 0.940 10 N -0.808 5.808 11 C -0.533 4.533 12 H 0.054 0.946 13 C 0.086 3.914 14 N -0.844 5.844 15 Si 0.888 3.112 16 H -0.280 1.280 17 H -0.285 1.285 18 H -0.274 1.274 19 C -0.124 4.124 20 C 0.107 3.893 21 F -0.133 7.133 22 H 0.085 0.915 23 H 0.108 0.892 24 H 0.085 0.915 25 H 0.137 0.863 26 H 0.302 0.698 27 H 0.320 0.680 28 H 0.258 0.742 29 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.462 -13.870 2.540 14.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.316 4.316 2 S 0.138 5.862 3 C -0.237 4.237 4 C -0.170 4.170 5 C 0.091 3.909 6 F -0.103 7.103 7 C -0.083 4.083 8 C 0.146 3.854 9 H 0.077 0.923 10 N -0.335 5.335 11 C -0.571 4.571 12 H 0.072 0.928 13 C -0.121 4.121 14 N -0.478 5.478 15 Si 0.716 3.284 16 H -0.206 1.206 17 H -0.211 1.211 18 H -0.199 1.199 19 C -0.144 4.144 20 C 0.082 3.918 21 F -0.112 7.112 22 H 0.104 0.896 23 H 0.126 0.874 24 H 0.104 0.896 25 H 0.155 0.845 26 H 0.113 0.887 27 H 0.134 0.866 28 H 0.068 0.932 29 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -3.872 -13.923 2.473 14.661 hybrid contribution -0.961 0.442 -0.896 1.386 sum -4.833 -13.481 1.577 14.408 Atomic orbital electron populations 1.23699 0.95038 1.06984 1.05903 1.85462 1.05987 1.01634 1.93132 1.21262 0.94350 0.97554 1.10540 1.20869 0.98919 0.91322 1.05912 1.17351 0.85616 0.85118 1.02815 1.91520 1.60055 1.65212 1.93492 1.21969 0.90472 1.02330 0.93577 1.18261 0.87984 0.81302 0.97831 0.92289 1.59117 1.06165 1.64939 1.03272 1.20696 1.50211 0.94447 0.91778 0.92751 1.24917 0.93925 0.96761 0.96535 1.70094 1.42323 1.04711 1.30675 0.86682 0.77891 0.78762 0.85098 1.20624 1.21123 1.19921 1.20822 1.01240 0.89407 1.02936 1.17035 0.82994 0.86493 1.05298 1.91481 1.60130 1.65591 1.93968 0.89588 0.87365 0.89646 0.84507 0.88733 0.86615 0.93228 0.83746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.15 101.05 0.92 -0.40 15 2 S -0.10 -1.34 22.17 -107.50 -2.38 -3.72 15 3 C -0.12 -1.97 6.11 -39.01 -0.24 -2.21 15 4 C -0.15 -2.33 9.34 -39.31 -0.37 -2.70 15 5 C 0.11 2.16 7.23 -39.45 -0.29 1.87 15 6 F -0.12 -2.54 16.65 2.25 0.04 -2.51 15 7 C -0.08 -1.58 5.02 -104.51 -0.52 -2.10 15 8 C 0.26 6.11 2.56 -70.02 -0.18 5.93 15 9 H 0.06 1.57 7.93 -51.93 -0.41 1.16 15 10 N -0.81 -17.94 8.02 -6.65 -0.05 -17.99 15 11 C -0.53 -14.25 8.70 -34.44 -0.30 -14.55 15 12 H 0.05 1.47 7.74 -52.49 -0.41 1.07 15 13 C 0.09 2.35 5.39 -17.82 -0.10 2.26 15 14 N -0.84 -23.99 12.78 55.43 0.71 -23.28 15 15 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 15 16 H -0.28 -6.61 7.11 56.52 0.40 -6.21 15 17 H -0.29 -6.73 7.11 56.52 0.40 -6.33 15 18 H -0.27 -6.47 7.11 56.52 0.40 -6.06 15 19 C -0.12 -2.23 9.22 -39.56 -0.36 -2.59 15 20 C 0.11 1.83 7.27 -39.24 -0.29 1.54 15 21 F -0.13 -2.23 16.76 2.25 0.04 -2.19 15 22 H 0.09 0.75 7.75 -51.93 -0.40 0.35 15 23 H 0.11 0.73 8.14 -51.92 -0.42 0.31 15 24 H 0.08 0.72 7.75 -51.93 -0.40 0.31 15 25 H 0.14 1.79 5.88 -52.49 -0.31 1.49 15 26 H 0.30 5.89 9.06 -39.29 -0.36 5.54 15 27 H 0.32 6.69 7.28 -39.29 -0.29 6.41 15 28 H 0.26 7.02 8.31 -40.82 -0.34 6.68 15 29 H 0.14 2.42 6.24 -52.48 -0.33 2.10 15 LS Contribution 273.29 15.07 4.12 4.12 Total: -1.00 -28.97 273.29 -6.73 -35.69 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -2.46 Total: 6.80 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: -1.72 Total: -12.95 kcal Atomic # 7 Polarization: -41.93 SS G_CDS: 0.65 Total: -41.28 kcal Atomic # 9 Polarization: -4.78 SS G_CDS: 0.08 Total: -4.70 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: -1.34 SS G_CDS: -2.38 Total: -3.72 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -28.97 -6.73 -35.69 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260931653.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.079 kcal (2) G-P(sol) polarization free energy of solvation -28.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds