Wall clock time and date at job start Mon Mar 30 2020 07:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.76195 * 102.99788 * 2 1 4 4 C 1.38876 * 120.07437 * 359.97438 * 3 2 1 5 5 C 1.38326 * 119.92023 * 179.72847 * 4 3 2 6 6 F 1.35102 * 119.97127 * 180.29295 * 5 4 3 7 7 C 1.38506 * 120.06303 * 0.56781 * 5 4 3 8 8 C 1.50700 * 119.92421 * 179.72968 * 7 5 4 9 9 H 1.08994 * 109.47551 * 39.72201 * 8 7 5 10 10 N 1.46900 * 109.47395 * 159.72663 * 8 7 5 11 11 C 1.50702 * 109.46869 * 279.72256 * 8 7 5 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 8 7 13 13 C 1.37884 * 119.99942 * 179.72213 * 11 8 7 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 8 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 8 16 16 H 1.48501 * 109.47188 * 90.00793 * 15 13 11 17 17 H 1.48501 * 109.47085 * 210.00372 * 15 13 11 18 18 H 1.48498 * 109.47634 * 330.00608 * 15 13 11 19 19 C 1.38284 * 120.14689 * 359.45313 * 7 5 4 20 20 C 1.38252 * 120.07982 * 0.24647 * 19 7 5 21 21 F 1.35099 * 120.03117 * 180.02562 * 20 19 7 22 22 H 1.08998 * 109.47088 * 60.00113 * 1 2 3 23 23 H 1.09008 * 109.46907 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.46998 * 299.99998 * 1 2 3 25 25 H 1.08002 * 120.03586 * 359.97438 * 4 3 2 26 26 H 1.00907 * 110.99792 * 296.04461 * 10 8 7 27 27 H 1.00903 * 111.00086 * 59.99217 * 10 8 7 28 28 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 29 29 H 1.08003 * 119.95777 * 180.27834 * 19 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.1959 2.6652 -0.0005 5 6 1.5106 4.0122 0.0051 6 9 0.5245 4.9357 0.0106 7 6 2.8357 4.4151 -0.0005 8 6 3.1750 5.8834 -0.0005 9 1 2.4898 6.4147 0.6600 10 7 4.5533 6.0676 0.4733 11 6 3.0479 6.4284 -1.3997 12 1 2.7507 5.7768 -2.2081 13 6 3.3049 7.7603 -1.6469 14 7 3.6665 8.5539 -0.6624 15 14 3.1399 8.4374 -3.3799 16 1 1.7523 8.9223 -3.5919 17 1 4.0910 9.5629 -3.5643 18 1 3.4450 7.3656 -4.3614 19 6 3.8481 3.4731 -0.0004 20 6 3.5404 2.1253 0.0001 21 9 4.5302 1.2058 0.0007 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0278 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 0.1624 2.3514 -0.0014 26 1 4.6489 5.7689 1.4324 27 1 5.2082 5.5841 -0.1229 28 1 3.8477 9.4908 -0.8363 29 1 4.8803 3.7907 -0.0003 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260931653.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:47 Heat of formation + Delta-G solvation = -78.691008 kcal Electronic energy + Delta-G solvation = -17009.083437 eV Core-core repulsion = 13886.736714 eV Total energy + Delta-G solvation = -3122.346723 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.054 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -50.03096 -49.86554 -40.10064 -36.55669 -33.86107 -31.69723 -30.99153 -29.66746 -28.17770 -25.37939 -23.67455 -22.23756 -19.39839 -18.67053 -18.33886 -18.20531 -17.02834 -16.94264 -16.54840 -16.34952 -16.05657 -15.35977 -15.23568 -15.00680 -14.79955 -14.57741 -14.25494 -13.82919 -13.45970 -13.29522 -13.05940 -12.78977 -12.70597 -12.31776 -11.84709 -11.52988 -11.37606 -10.64961 -10.50544 -9.81077 -9.06195 -8.45563 -8.01117 -6.24499 -0.17601 -0.10542 0.35454 1.32702 1.42550 1.43773 1.52929 2.20818 2.47237 2.99688 3.21520 3.28038 3.52146 3.84764 4.01299 4.25077 4.25336 4.30136 4.37780 4.62305 4.80272 4.86635 4.87958 5.04021 5.40462 5.65355 5.70450 6.07505 6.56933 7.01235 7.18181 7.47760 9.01192 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.028910 B = 0.006094 C = 0.005660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.277238 B = 4593.291714 C = 4945.514665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 S -0.108 6.108 3 C -0.117 4.117 4 C -0.132 4.132 5 C 0.094 3.906 6 F -0.139 7.139 7 C -0.103 4.103 8 C 0.264 3.736 9 H 0.021 0.979 10 N -0.818 5.818 11 C -0.544 4.544 12 H 0.045 0.955 13 C 0.039 3.961 14 N -0.876 5.876 15 Si 0.949 3.051 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.271 1.271 19 C -0.119 4.119 20 C 0.100 3.900 21 F -0.130 7.130 22 H 0.094 0.906 23 H 0.136 0.864 24 H 0.096 0.904 25 H 0.170 0.830 26 H 0.317 0.683 27 H 0.328 0.672 28 H 0.257 0.743 29 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.358 -15.963 2.000 16.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.312 4.312 2 S 0.133 5.867 3 C -0.230 4.230 4 C -0.156 4.156 5 C 0.073 3.927 6 F -0.117 7.117 7 C -0.109 4.109 8 C 0.153 3.847 9 H 0.039 0.961 10 N -0.346 5.346 11 C -0.582 4.582 12 H 0.063 0.937 13 C -0.166 4.166 14 N -0.511 5.511 15 Si 0.774 3.226 16 H -0.203 1.203 17 H -0.207 1.207 18 H -0.196 1.196 19 C -0.139 4.139 20 C 0.074 3.926 21 F -0.109 7.109 22 H 0.112 0.888 23 H 0.154 0.846 24 H 0.115 0.885 25 H 0.187 0.813 26 H 0.129 0.871 27 H 0.142 0.858 28 H 0.067 0.933 29 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -4.769 -16.046 1.932 16.851 hybrid contribution -0.744 0.897 -0.683 1.351 sum -5.513 -15.150 1.249 16.170 Atomic orbital electron populations 1.23906 0.91179 1.09182 1.06884 1.85589 1.10205 0.98578 1.92331 1.21590 0.93802 0.99684 1.07971 1.21093 1.00601 0.89640 1.04314 1.17615 0.84984 0.86254 1.03863 1.91478 1.60432 1.66034 1.93772 1.21539 0.91790 1.00612 0.96964 1.17790 0.87896 0.83397 0.95609 0.96137 1.58894 1.05678 1.65677 1.04371 1.20983 1.49563 0.94632 0.93053 0.93689 1.25634 0.93816 0.97156 0.99969 1.70209 1.43661 1.04833 1.32443 0.85735 0.77851 0.78067 0.80936 1.20293 1.20741 1.19561 1.20790 1.01017 0.89709 1.02390 1.17063 0.83768 0.86128 1.05607 1.91487 1.60129 1.65305 1.93950 0.88751 0.84551 0.88493 0.81265 0.87126 0.85836 0.93345 0.83127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.15 113.37 1.04 -0.90 15 2 S -0.11 -2.48 22.17 -56.49 -1.25 -3.74 15 3 C -0.12 -3.47 6.11 22.64 0.14 -3.33 15 4 C -0.13 -3.94 9.34 22.44 0.21 -3.73 15 5 C 0.09 3.60 7.23 22.35 0.16 3.76 15 6 F -0.14 -5.75 16.65 44.97 0.75 -5.00 15 7 C -0.10 -4.23 5.02 -19.79 -0.10 -4.33 15 8 C 0.26 12.97 2.56 43.42 0.11 13.08 15 9 H 0.02 1.16 7.93 -2.39 -0.02 1.14 15 10 N -0.82 -37.10 8.02 -174.96 -1.40 -38.51 15 11 C -0.54 -29.72 8.70 25.60 0.22 -29.50 15 12 H 0.04 2.48 7.74 -2.91 -0.02 2.46 15 13 C 0.04 2.13 5.39 84.66 0.46 2.59 15 14 N -0.88 -50.82 12.78 21.45 0.27 -50.55 15 15 Si 0.95 43.68 29.54 68.60 2.03 45.71 15 16 H -0.28 -12.53 7.11 99.48 0.71 -11.82 15 17 H -0.28 -12.72 7.11 99.48 0.71 -12.01 15 18 H -0.27 -12.20 7.11 99.48 0.71 -11.50 15 19 C -0.12 -4.24 9.22 22.28 0.21 -4.03 15 20 C 0.10 3.27 7.27 22.49 0.16 3.43 15 21 F -0.13 -4.15 16.76 44.97 0.75 -3.40 15 22 H 0.09 1.20 7.75 -2.39 -0.02 1.19 15 23 H 0.14 1.16 8.14 -2.39 -0.02 1.14 15 24 H 0.10 1.17 7.75 -2.39 -0.02 1.15 15 25 H 0.17 3.84 5.88 -2.91 -0.02 3.82 15 26 H 0.32 12.61 9.06 -89.69 -0.81 11.80 15 27 H 0.33 13.88 7.28 -89.69 -0.65 13.22 15 28 H 0.26 14.26 8.31 -92.70 -0.77 13.49 15 29 H 0.15 5.04 6.24 -2.91 -0.02 5.02 15 Total: -1.00 -62.86 273.29 3.51 -59.35 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: -0.25 Total: 19.10 kcal Atomic # 6 Polarization: -25.58 SS G_CDS: 2.61 Total: -22.97 kcal Atomic # 7 Polarization: -87.93 SS G_CDS: -1.13 Total: -89.05 kcal Atomic # 9 Polarization: -9.90 SS G_CDS: 1.50 Total: -8.40 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 16 Polarization: -2.48 SS G_CDS: -1.25 Total: -3.74 kcal Total: -62.86 3.51 -59.35 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260931653.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.341 kcal (2) G-P(sol) polarization free energy of solvation -62.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds