Wall clock time and date at job start Mon Mar 30 2020 07:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00276 * 2 1 4 4 H 1.48497 * 109.46840 * 240.00125 * 3 2 1 5 5 H 1.48500 * 109.46983 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47278 * 119.99808 * 3 2 1 7 7 C 1.37880 * 119.99807 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99654 * 174.94131 * 7 2 1 9 9 C 1.50699 * 120.00067 * 355.21965 * 7 2 1 10 10 H 1.08995 * 109.47082 * 334.80079 * 9 7 2 11 11 C 1.50703 * 109.47265 * 94.80796 * 9 7 2 12 12 C 1.36749 * 120.12426 * 59.99367 * 11 9 7 13 13 C 1.38929 * 120.15424 * 180.02562 * 12 11 9 14 14 C 1.36078 * 121.15706 * 0.02562 * 13 12 11 15 15 C 1.41159 * 120.21064 * 359.95471 * 14 13 12 16 16 C 1.44966 * 130.66738 * 180.02562 * 15 14 13 17 17 N 1.28729 * 117.83540 * 179.97438 * 16 15 14 18 18 S 1.69388 * 108.98729 * 359.97438 * 17 16 15 19 19 C 1.38744 * 120.12003 * 239.72730 * 11 9 7 20 20 C 1.53000 * 109.46982 * 214.80520 * 9 7 2 21 21 C 1.53004 * 117.49808 * 133.97800 * 20 9 7 22 22 C 1.52999 * 60.00062 * 252.50885 * 21 20 9 23 23 H 0.96994 * 119.99666 * 0.02562 * 1 2 3 24 24 H 1.08000 * 119.92164 * 0.02562 * 12 11 9 25 25 H 1.07989 * 119.41927 * 179.97438 * 13 12 11 26 26 H 1.08002 * 119.89443 * 179.97438 * 14 13 12 27 27 H 1.08002 * 121.08344 * 0.02562 * 16 15 14 28 28 H 1.08998 * 115.55164 * 279.68702 * 20 9 7 29 29 H 1.09002 * 117.49732 * 359.97438 * 21 20 9 30 30 H 1.08997 * 117.49693 * 145.02018 * 21 20 9 31 31 H 1.09002 * 117.50162 * 252.51360 * 22 21 20 32 32 H 1.09002 * 117.51997 * 107.48018 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0814 -1.1959 -0.0819 9 6 1.2549 -2.4969 0.1099 10 1 0.3020 -2.3267 0.6108 11 6 1.0058 -3.0504 -1.2695 12 6 2.0584 -3.3446 -2.0914 13 6 1.8295 -3.8545 -3.3633 14 6 0.5653 -4.0709 -3.8180 15 6 -0.5448 -3.7789 -2.9963 16 6 -1.9662 -3.9188 -3.2441 17 7 -2.7768 -3.5725 -2.3060 18 16 -1.8804 -3.0226 -0.9781 19 6 -0.2922 -3.2686 -1.7081 20 6 2.0847 -3.4963 0.9183 21 6 1.3658 -4.2913 2.0102 22 6 2.3392 -3.1743 2.3922 23 1 -0.4849 0.8400 -0.0004 24 1 3.0701 -3.1802 -1.7509 25 1 2.6695 -4.0822 -4.0026 26 1 0.4108 -4.4676 -4.8105 27 1 -2.3332 -4.3018 -4.1849 28 1 2.8795 -4.0006 0.3688 29 1 0.3019 -4.1019 2.1530 30 1 1.6877 -5.3189 2.1792 31 1 3.3014 -3.4671 2.8124 32 1 1.9160 -2.2502 2.7859 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260935672.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:31 Heat of formation + Delta-G solvation = 64.700460 kcal Electronic energy + Delta-G solvation = -16792.035804 eV Core-core repulsion = 14230.136532 eV Total energy + Delta-G solvation = -2561.899272 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.24461 -37.05611 -35.58941 -33.01868 -31.09298 -29.75892 -27.26893 -23.82429 -23.72373 -21.63497 -21.48317 -20.87759 -19.08287 -17.22914 -16.43577 -15.45292 -15.17801 -14.84034 -14.54972 -14.16117 -13.73314 -13.43829 -13.00406 -12.57161 -12.06340 -11.50921 -11.43642 -11.26226 -11.04048 -10.81160 -10.78367 -10.61474 -10.20687 -10.06055 -9.79201 -9.53934 -9.25536 -8.97067 -8.72587 -8.54716 -8.14879 -7.00388 -6.11522 -4.16313 1.20653 1.95754 2.22657 2.63465 2.83249 3.26955 3.32742 3.34278 4.30229 4.40869 4.72601 4.96887 5.13959 5.28626 5.59180 5.62778 5.67801 5.83477 5.89373 6.03814 6.17853 6.27793 6.31770 6.41673 6.55459 6.72330 6.79856 6.87804 6.94628 7.09444 7.17938 7.25961 7.58271 7.66912 7.82947 8.21451 8.88403 9.46827 10.95377 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.016631 B = 0.008985 C = 0.008189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.166393 B = 3115.700599 C = 3418.368524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.068 3.932 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.506 4.506 8 H 0.060 0.940 9 C 0.091 3.909 10 H 0.069 0.931 11 C 0.023 3.977 12 C -0.096 4.096 13 C -0.122 4.122 14 C -0.090 4.090 15 C -0.150 4.150 16 C 0.113 3.887 17 N -0.469 5.469 18 S 0.222 5.778 19 C -0.120 4.120 20 C -0.121 4.121 21 C -0.201 4.201 22 C -0.168 4.168 23 H 0.265 0.735 24 H 0.126 0.874 25 H 0.117 0.883 26 H 0.118 0.882 27 H 0.174 0.826 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.635 -7.664 -3.692 8.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.136 4.136 3 Si 0.719 3.281 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.544 4.544 8 H 0.078 0.922 9 C 0.072 3.928 10 H 0.087 0.913 11 C 0.019 3.981 12 C -0.119 4.119 13 C -0.142 4.142 14 C -0.113 4.113 15 C -0.162 4.162 16 C -0.097 4.097 17 N -0.281 5.281 18 S 0.377 5.623 19 C -0.240 4.240 20 C -0.140 4.140 21 C -0.238 4.238 22 C -0.205 4.205 23 H 0.075 0.925 24 H 0.144 0.856 25 H 0.135 0.865 26 H 0.135 0.865 27 H 0.190 0.810 28 H 0.104 0.896 29 H 0.105 0.895 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.393 -7.001 -2.224 7.357 hybrid contribution 1.760 0.641 -1.439 2.362 sum 1.367 -6.360 -3.663 7.466 Atomic orbital electron populations 1.69917 1.05747 1.27171 1.48367 1.25002 0.94906 0.99238 0.94439 0.86657 0.79660 0.83049 0.78697 1.20238 1.21298 1.20102 1.20804 0.93052 0.89003 1.51502 0.92227 1.17748 0.97332 0.91377 0.86333 0.91307 1.19709 0.88255 0.90276 0.99887 1.20782 0.99287 0.98633 0.93209 1.20634 0.96265 1.00785 0.96553 1.20276 0.90906 1.01740 0.98375 1.20392 0.93574 1.06826 0.95391 1.23634 0.88818 0.98266 0.99022 1.75609 1.30077 1.17677 1.04730 1.85066 0.92008 1.65790 1.19435 1.23361 0.99444 1.03925 0.97311 1.22471 1.00906 1.00000 0.90587 1.23001 0.98246 0.95608 1.06956 1.22705 0.99093 0.99343 0.99355 0.92527 0.85614 0.86476 0.86451 0.80969 0.89614 0.89503 0.90396 0.90423 0.88656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.89 12.84 55.43 0.71 -23.18 16 2 C 0.07 1.79 5.45 -17.82 -0.10 1.69 16 3 Si 0.89 20.55 29.54 -169.99 -5.02 15.53 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.51 -12.75 7.70 -34.44 -0.27 -13.02 16 8 H 0.06 1.48 7.82 -52.48 -0.41 1.07 16 9 C 0.09 2.10 2.15 -92.92 -0.20 1.90 16 10 H 0.07 1.76 6.34 -51.93 -0.33 1.43 16 11 C 0.02 0.51 4.75 -104.97 -0.50 0.01 16 12 C -0.10 -1.83 8.62 -39.86 -0.34 -2.17 16 13 C -0.12 -1.99 9.92 -40.10 -0.40 -2.39 16 14 C -0.09 -1.45 10.07 -39.25 -0.40 -1.84 16 15 C -0.15 -2.81 6.12 -105.14 -0.64 -3.45 16 16 C 0.11 1.94 11.46 -16.19 -0.19 1.75 16 17 N -0.47 -9.18 11.90 30.97 0.37 -8.81 16 18 S 0.22 4.77 23.13 -107.50 -2.49 2.28 16 19 C -0.12 -2.58 6.45 -38.41 -0.25 -2.83 16 20 C -0.12 -2.40 4.93 -90.62 -0.45 -2.85 16 21 C -0.20 -3.59 10.18 -26.73 -0.27 -3.86 16 22 C -0.17 -3.10 10.01 -26.73 -0.27 -3.37 16 23 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 24 H 0.13 2.26 7.77 -52.49 -0.41 1.86 16 25 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 26 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 27 H 0.17 2.18 8.06 -52.49 -0.42 1.76 16 28 H 0.09 1.59 7.41 -51.93 -0.38 1.21 16 29 H 0.09 1.61 8.08 -51.93 -0.42 1.19 16 30 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 31 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 32 H 0.09 1.92 8.14 -51.93 -0.42 1.49 16 LS Contribution 290.87 15.07 4.38 4.38 Total: -1.00 -27.96 290.87 -9.93 -37.89 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -3.62 Total: 2.34 kcal Atomic # 6 Polarization: -26.17 SS G_CDS: -4.26 Total: -30.43 kcal Atomic # 7 Polarization: -33.08 SS G_CDS: 1.08 Total: -32.00 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 16 Polarization: 4.77 SS G_CDS: -2.49 Total: 2.28 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -27.96 -9.93 -37.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260935672.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.586 kcal (2) G-P(sol) polarization free energy of solvation -27.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds