Wall clock time and date at job start Mon Mar 30 2020 07:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00276 * 2 1 4 4 H 1.48497 * 109.46840 * 240.00125 * 3 2 1 5 5 H 1.48500 * 109.46983 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47278 * 119.99808 * 3 2 1 7 7 C 1.37880 * 119.99807 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99654 * 174.94131 * 7 2 1 9 9 C 1.50699 * 120.00067 * 355.21965 * 7 2 1 10 10 H 1.08995 * 109.47082 * 334.80079 * 9 7 2 11 11 C 1.50703 * 109.47265 * 94.80796 * 9 7 2 12 12 C 1.36749 * 120.12426 * 59.99367 * 11 9 7 13 13 C 1.38929 * 120.15424 * 180.02562 * 12 11 9 14 14 C 1.36078 * 121.15706 * 0.02562 * 13 12 11 15 15 C 1.41159 * 120.21064 * 359.95471 * 14 13 12 16 16 C 1.44966 * 130.66738 * 180.02562 * 15 14 13 17 17 N 1.28729 * 117.83540 * 179.97438 * 16 15 14 18 18 S 1.69388 * 108.98729 * 359.97438 * 17 16 15 19 19 C 1.38744 * 120.12003 * 239.72730 * 11 9 7 20 20 C 1.53000 * 109.46982 * 214.80520 * 9 7 2 21 21 C 1.53004 * 117.49808 * 133.97800 * 20 9 7 22 22 C 1.52999 * 60.00062 * 252.50885 * 21 20 9 23 23 H 0.96994 * 119.99666 * 0.02562 * 1 2 3 24 24 H 1.08000 * 119.92164 * 0.02562 * 12 11 9 25 25 H 1.07989 * 119.41927 * 179.97438 * 13 12 11 26 26 H 1.08002 * 119.89443 * 179.97438 * 14 13 12 27 27 H 1.08002 * 121.08344 * 0.02562 * 16 15 14 28 28 H 1.08998 * 115.55164 * 279.68702 * 20 9 7 29 29 H 1.09002 * 117.49732 * 359.97438 * 21 20 9 30 30 H 1.08997 * 117.49693 * 145.02018 * 21 20 9 31 31 H 1.09002 * 117.50162 * 252.51360 * 22 21 20 32 32 H 1.09002 * 117.51997 * 107.48018 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0814 -1.1959 -0.0819 9 6 1.2549 -2.4969 0.1099 10 1 0.3020 -2.3267 0.6108 11 6 1.0058 -3.0504 -1.2695 12 6 2.0584 -3.3446 -2.0914 13 6 1.8295 -3.8545 -3.3633 14 6 0.5653 -4.0709 -3.8180 15 6 -0.5448 -3.7789 -2.9963 16 6 -1.9662 -3.9188 -3.2441 17 7 -2.7768 -3.5725 -2.3060 18 16 -1.8804 -3.0226 -0.9781 19 6 -0.2922 -3.2686 -1.7081 20 6 2.0847 -3.4963 0.9183 21 6 1.3658 -4.2913 2.0102 22 6 2.3392 -3.1743 2.3922 23 1 -0.4849 0.8400 -0.0004 24 1 3.0701 -3.1802 -1.7509 25 1 2.6695 -4.0822 -4.0026 26 1 0.4108 -4.4676 -4.8105 27 1 -2.3332 -4.3018 -4.1849 28 1 2.8795 -4.0006 0.3688 29 1 0.3019 -4.1019 2.1530 30 1 1.6877 -5.3189 2.1792 31 1 3.3014 -3.4671 2.8124 32 1 1.9160 -2.2502 2.7859 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260935672.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:31 Heat of formation + Delta-G solvation = 50.985982 kcal Electronic energy + Delta-G solvation = -16792.630509 eV Core-core repulsion = 14230.136532 eV Total energy + Delta-G solvation = -2562.493976 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.68573 -38.58921 -37.02191 -34.83309 -32.69130 -31.19265 -28.96756 -25.62342 -25.14422 -23.11966 -22.93437 -22.28644 -20.69303 -18.73853 -18.28478 -16.88131 -16.64830 -16.61736 -16.08360 -15.53500 -15.25155 -14.91074 -14.57854 -14.14528 -13.68348 -13.25005 -12.90339 -12.83750 -12.70583 -12.43040 -12.34093 -12.26395 -11.79761 -11.66708 -11.34930 -11.10708 -10.93723 -10.49898 -10.48113 -10.32853 -9.60983 -8.55867 -8.06684 -6.16393 -0.21836 0.56127 0.71725 1.16963 1.40602 1.42086 1.45422 1.49753 2.43225 2.95007 3.16440 3.29799 3.62460 3.86745 4.14338 4.27007 4.33813 4.41294 4.48457 4.70593 4.77697 4.83559 4.89635 4.92676 5.18993 5.19196 5.28415 5.43567 5.44570 5.64887 5.68674 5.75049 5.78472 6.02123 6.17402 6.35020 6.93995 7.48277 8.97929 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.016631 B = 0.008985 C = 0.008189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.166393 B = 3115.700599 C = 3418.368524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.019 3.981 3 Si 0.944 3.056 4 H -0.272 1.272 5 H -0.294 1.294 6 H -0.270 1.270 7 C -0.506 4.506 8 H 0.059 0.941 9 C 0.093 3.907 10 H 0.031 0.969 11 C -0.012 4.012 12 C -0.098 4.098 13 C -0.120 4.120 14 C -0.070 4.070 15 C -0.164 4.164 16 C 0.132 3.868 17 N -0.482 5.482 18 S 0.144 5.856 19 C -0.142 4.142 20 C -0.136 4.136 21 C -0.187 4.187 22 C -0.166 4.166 23 H 0.257 0.743 24 H 0.132 0.868 25 H 0.162 0.838 26 H 0.169 0.831 27 H 0.228 0.772 28 H 0.102 0.898 29 H 0.069 0.931 30 H 0.109 0.891 31 H 0.107 0.893 32 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.428 -9.397 -6.261 11.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.181 4.181 3 Si 0.771 3.229 4 H -0.197 1.197 5 H -0.220 1.220 6 H -0.195 1.195 7 C -0.544 4.544 8 H 0.077 0.923 9 C 0.074 3.926 10 H 0.049 0.951 11 C -0.016 4.016 12 C -0.121 4.121 13 C -0.139 4.139 14 C -0.093 4.093 15 C -0.176 4.176 16 C -0.078 4.078 17 N -0.293 5.293 18 S 0.297 5.703 19 C -0.262 4.262 20 C -0.154 4.154 21 C -0.224 4.224 22 C -0.203 4.203 23 H 0.066 0.934 24 H 0.150 0.850 25 H 0.180 0.820 26 H 0.186 0.814 27 H 0.244 0.756 28 H 0.120 0.880 29 H 0.088 0.912 30 H 0.127 0.873 31 H 0.125 0.875 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.413 -8.742 -4.788 10.067 hybrid contribution 1.258 1.059 -0.763 1.813 sum 2.672 -7.684 -5.551 9.848 Atomic orbital electron populations 1.70087 1.06921 1.26960 1.50428 1.25668 0.95495 1.02026 0.94939 0.85824 0.78444 0.79813 0.78848 1.19684 1.21968 1.19548 1.21098 0.93063 0.90235 1.50022 0.92287 1.17552 0.95658 0.91600 0.87807 0.95079 1.19629 0.89385 0.93027 0.99588 1.21036 0.98749 0.98051 0.94287 1.21101 0.98033 0.99178 0.95600 1.20877 0.89623 0.99061 0.99691 1.20867 0.95144 1.06896 0.94695 1.24430 0.88136 0.95362 0.99853 1.75783 1.29705 1.19300 1.04509 1.85206 0.94326 1.68334 1.22410 1.23495 0.98665 1.05333 0.98731 1.22424 1.01567 1.00449 0.90975 1.23002 0.97258 0.96931 1.05206 1.22716 1.00460 0.98644 0.98500 0.93377 0.85026 0.82030 0.81366 0.75605 0.87983 0.91241 0.87312 0.87494 0.91282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.95 12.84 21.45 0.28 -51.68 16 2 C 0.02 1.02 5.45 84.66 0.46 1.48 16 3 Si 0.94 43.06 29.54 68.60 2.03 45.08 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 5 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 6 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 7 C -0.51 -26.08 7.70 25.60 0.20 -25.88 16 8 H 0.06 2.96 7.82 -2.91 -0.02 2.93 16 9 C 0.09 4.42 2.15 -12.29 -0.03 4.39 16 10 H 0.03 1.70 6.34 -2.39 -0.02 1.68 16 11 C -0.01 -0.50 4.75 -20.09 -0.10 -0.60 16 12 C -0.10 -3.55 8.62 22.09 0.19 -3.36 16 13 C -0.12 -3.34 9.92 21.93 0.22 -3.12 16 14 C -0.07 -1.90 10.07 22.48 0.23 -1.68 16 15 C -0.16 -5.74 6.12 -20.20 -0.12 -5.87 16 16 C 0.13 4.19 11.46 86.87 1.00 5.19 16 17 N -0.48 -18.77 11.90 -55.95 -0.67 -19.43 16 18 S 0.14 6.48 23.13 -56.49 -1.31 5.18 16 19 C -0.14 -6.18 6.45 23.03 0.15 -6.03 16 20 C -0.14 -5.39 4.93 -10.79 -0.05 -5.44 16 21 C -0.19 -6.65 10.18 30.60 0.31 -6.34 16 22 C -0.17 -6.13 10.01 30.59 0.31 -5.82 16 23 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 24 H 0.13 4.48 7.77 -2.91 -0.02 4.46 16 25 H 0.16 3.10 8.06 -2.92 -0.02 3.08 16 26 H 0.17 2.88 8.06 -2.91 -0.02 2.85 16 27 H 0.23 4.53 8.06 -2.91 -0.02 4.51 16 28 H 0.10 3.66 7.41 -2.39 -0.02 3.64 16 29 H 0.07 2.70 8.08 -2.39 -0.02 2.68 16 30 H 0.11 3.18 8.14 -2.39 -0.02 3.16 16 31 H 0.11 3.27 8.14 -2.39 -0.02 3.25 16 32 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 Total: -1.00 -64.74 290.87 4.21 -60.53 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: 1.12 Total: 13.39 kcal Atomic # 6 Polarization: -55.83 SS G_CDS: 2.76 Total: -53.07 kcal Atomic # 7 Polarization: -70.72 SS G_CDS: -0.39 Total: -71.11 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.08 kcal Atomic # 16 Polarization: 6.48 SS G_CDS: -1.31 Total: 5.18 kcal Total: -64.74 4.21 -60.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260935672.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.520 kcal (2) G-P(sol) polarization free energy of solvation -64.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds