Wall clock time and date at job start Mon Mar 30 2020 07:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00184 * 2 1 4 4 H 1.48501 * 109.46808 * 269.99984 * 3 2 1 5 5 H 1.48501 * 109.46865 * 29.99517 * 3 2 1 6 6 H 1.48494 * 109.47216 * 149.99822 * 3 2 1 7 7 C 1.37881 * 119.99868 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99928 * 185.94537 * 7 2 1 9 9 C 1.50694 * 120.00012 * 5.94039 * 7 2 1 10 10 H 1.08997 * 109.47765 * 335.51041 * 9 7 2 11 11 C 1.50701 * 109.46858 * 95.50942 * 9 7 2 12 12 C 1.38974 * 119.92763 * 60.02263 * 11 9 7 13 13 C 1.36033 * 121.16359 * 179.97438 * 12 11 9 14 14 C 1.41195 * 120.21221 * 359.97438 * 13 12 11 15 15 C 1.44959 * 130.66692 * 179.97438 * 14 13 12 16 16 N 1.28728 * 117.83975 * 180.02562 * 15 14 13 17 17 S 1.69392 * 108.97993 * 0.02562 * 16 15 14 18 18 C 1.40812 * 117.79444 * 359.73256 * 14 13 12 19 19 C 1.36718 * 119.92296 * 239.99750 * 11 9 7 20 20 C 1.53000 * 109.47405 * 215.50509 * 9 7 2 21 21 C 1.53001 * 117.50143 * 134.11378 * 20 9 7 22 22 C 1.52997 * 59.99961 * 252.51616 * 21 20 9 23 23 H 0.96995 * 120.00047 * 359.97438 * 1 2 3 24 24 H 1.08002 * 119.41522 * 0.02562 * 12 11 9 25 25 H 1.08008 * 119.89603 * 179.97438 * 13 12 11 26 26 H 1.08003 * 121.07851 * 0.05146 * 15 14 13 27 27 H 1.08001 * 120.12274 * 359.97438 * 19 11 9 28 28 H 1.08999 * 115.55141 * 279.82732 * 20 9 7 29 29 H 1.09004 * 117.49556 * 0.02562 * 21 20 9 30 30 H 1.09001 * 117.50114 * 145.01873 * 21 20 9 31 31 H 1.09005 * 117.49253 * 252.50792 * 22 21 20 32 32 H 1.09000 * 117.52261 * 107.48666 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0802 -1.1966 0.0974 9 6 1.2571 -2.4957 -0.1339 10 1 0.2310 -2.3626 0.2087 11 6 1.2526 -2.9254 -1.5784 12 6 2.4544 -3.1581 -2.2363 13 6 2.4796 -3.5472 -3.5396 14 6 1.2733 -3.7232 -4.2520 15 6 1.0369 -4.1246 -5.6247 16 7 -0.1838 -4.2068 -6.0252 17 16 -1.2128 -3.7937 -4.7447 18 6 0.0658 -3.4887 -3.5666 19 6 0.0661 -3.0858 -2.2385 20 6 1.9432 -3.5679 0.7148 21 6 1.0534 -4.4514 1.5916 22 6 1.9359 -3.3787 2.2331 23 1 -0.4850 0.8400 0.0004 24 1 3.3847 -3.0286 -1.7032 25 1 3.4254 -3.7222 -4.0310 26 1 1.8581 -4.3479 -6.2896 27 1 -0.8677 -2.9055 -1.7266 28 1 2.8257 -4.0269 0.2691 29 1 -0.0209 -4.2690 1.5633 30 1 1.3503 -5.4920 1.7226 31 1 2.8134 -3.7137 2.7862 32 1 1.4426 -2.4902 2.6272 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260938560.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:37 Heat of formation + Delta-G solvation = 62.250646 kcal Electronic energy + Delta-G solvation = -16453.396088 eV Core-core repulsion = 13891.390584 eV Total energy + Delta-G solvation = -2562.005504 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.38321 -37.22363 -35.65878 -32.97729 -30.82405 -30.44165 -27.36238 -24.26739 -23.15702 -21.99818 -21.57185 -20.78016 -19.23472 -17.61342 -16.52155 -15.51690 -15.28750 -14.81738 -14.78264 -13.91303 -13.85315 -13.34717 -13.25264 -13.00149 -12.19344 -11.64859 -11.50166 -11.37881 -11.15099 -10.82055 -10.75786 -10.64203 -10.29464 -10.12609 -10.05585 -9.53655 -9.37391 -9.31444 -8.87178 -8.61481 -7.97166 -7.41807 -6.20713 -4.23238 1.04242 1.82743 1.87536 2.24069 2.65800 3.22212 3.29977 3.31365 4.24160 4.34675 4.70911 4.81193 5.06208 5.13211 5.51937 5.55535 5.73909 5.82578 5.93288 5.95532 6.07986 6.23826 6.27225 6.40664 6.50222 6.58662 6.71728 6.82364 6.92183 6.96863 7.07181 7.29512 7.52387 7.65739 7.76891 8.15792 8.83511 9.39767 10.87155 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.018784 B = 0.007103 C = 0.006110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.301686 B = 3940.903125 C = 4581.815520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.068 3.932 3 Si 0.891 3.109 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.502 4.502 8 H 0.061 0.939 9 C 0.087 3.913 10 H 0.075 0.925 11 C 0.026 3.974 12 C -0.110 4.110 13 C -0.063 4.063 14 C -0.176 4.176 15 C 0.136 3.864 16 N -0.461 5.461 17 S 0.143 5.857 18 C -0.113 4.113 19 C -0.095 4.095 20 C -0.121 4.121 21 C -0.201 4.201 22 C -0.168 4.168 23 H 0.265 0.735 24 H 0.127 0.873 25 H 0.121 0.879 26 H 0.180 0.820 27 H 0.127 0.873 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.077 -7.006 -3.543 8.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.136 4.136 3 Si 0.719 3.281 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.539 4.539 8 H 0.079 0.921 9 C 0.068 3.932 10 H 0.093 0.907 11 C 0.021 3.979 12 C -0.130 4.130 13 C -0.085 4.085 14 C -0.187 4.187 15 C -0.074 4.074 16 N -0.271 5.271 17 S 0.294 5.706 18 C -0.233 4.233 19 C -0.119 4.119 20 C -0.139 4.139 21 C -0.238 4.238 22 C -0.205 4.205 23 H 0.075 0.925 24 H 0.145 0.855 25 H 0.139 0.861 26 H 0.196 0.804 27 H 0.145 0.855 28 H 0.103 0.897 29 H 0.105 0.895 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.836 -7.150 -4.689 8.591 hybrid contribution 2.108 1.232 0.564 2.506 sum 2.945 -5.918 -4.125 7.791 Atomic orbital electron populations 1.69885 1.06008 1.27188 1.48871 1.25002 0.94879 0.99431 0.94245 0.86591 0.80001 0.83210 0.78308 1.20521 1.21147 1.19638 1.20880 0.93533 0.89209 1.50295 0.92104 1.17811 0.99351 0.91344 0.84693 0.90715 1.20742 0.90882 0.86661 0.99633 1.20687 0.99123 0.99358 0.93821 1.20511 0.95118 0.98721 0.94176 1.20201 0.94707 1.10417 0.93383 1.23795 0.94616 0.95294 0.93670 1.75790 1.05709 1.22413 1.23211 1.84646 1.14447 1.72034 0.99440 1.23392 0.96254 1.04469 0.99175 1.19946 0.99550 1.01788 0.90574 1.22437 0.99664 0.99333 0.92474 1.22995 0.97872 0.95174 1.07722 1.22706 1.01025 1.00196 0.96560 0.92542 0.85493 0.86072 0.80369 0.85464 0.89687 0.89455 0.90481 0.90504 0.88563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.71 12.76 55.43 0.71 -23.00 16 2 C 0.07 1.75 5.45 -17.82 -0.10 1.65 16 3 Si 0.89 20.17 29.54 -169.99 -5.02 15.15 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 7 C -0.50 -12.27 7.71 -34.44 -0.27 -12.54 16 8 H 0.06 1.48 7.82 -52.48 -0.41 1.07 16 9 C 0.09 1.91 2.22 -92.93 -0.21 1.71 16 10 H 0.07 1.85 6.74 -51.93 -0.35 1.50 16 11 C 0.03 0.54 4.74 -104.90 -0.50 0.04 16 12 C -0.11 -2.00 8.55 -40.10 -0.34 -2.35 16 13 C -0.06 -1.01 10.06 -39.25 -0.40 -1.40 16 14 C -0.18 -3.03 6.12 -105.14 -0.64 -3.67 16 15 C 0.14 2.07 11.46 -16.19 -0.19 1.88 16 16 N -0.46 -7.84 11.90 30.96 0.37 -7.47 16 17 S 0.14 2.52 23.86 -107.50 -2.56 -0.05 16 18 C -0.11 -2.15 6.71 -38.40 -0.26 -2.41 16 19 C -0.10 -1.95 9.64 -39.93 -0.38 -2.33 16 20 C -0.12 -2.29 4.93 -90.62 -0.45 -2.74 16 21 C -0.20 -3.42 10.18 -26.73 -0.27 -3.69 16 22 C -0.17 -3.01 10.01 -26.73 -0.27 -3.27 16 23 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 24 H 0.13 2.15 7.77 -52.49 -0.41 1.75 16 25 H 0.12 1.50 8.06 -52.48 -0.42 1.07 16 26 H 0.18 1.95 8.06 -52.48 -0.42 1.52 16 27 H 0.13 2.63 7.92 -52.49 -0.42 2.22 16 28 H 0.08 1.51 7.41 -51.93 -0.38 1.13 16 29 H 0.09 1.52 8.08 -51.93 -0.42 1.10 16 30 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.10 1.89 8.14 -51.93 -0.42 1.47 16 LS Contribution 291.77 15.07 4.40 4.40 Total: -1.00 -26.91 291.77 -10.01 -36.92 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -3.64 Total: 3.17 kcal Atomic # 6 Polarization: -24.86 SS G_CDS: -4.26 Total: -29.12 kcal Atomic # 7 Polarization: -31.55 SS G_CDS: 1.08 Total: -30.47 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Atomic # 16 Polarization: 2.52 SS G_CDS: -2.56 Total: -0.05 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -26.91 -10.01 -36.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260938560.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.173 kcal (2) G-P(sol) polarization free energy of solvation -26.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds